Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003497

Physical Location & Seq

Genomic Coordinates Forward (+)

17582834 .. 17589839

Gene Structure 7006 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG196100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3042 bp

ATGGGGAGCTCCAGAGTGAGGATCAGAGCCCGTTGGTTTCCCCATGTTGTGTTCATCGTCGTTTTGAGATTGTTGCCGTGCTTTTTGTGCCAGGACGAAGATGATTTCAGTAAGAACAAAAACCCGGCCACGCTTCCTCTTGTTACTCAGCTCTTGGAGAGCAAGCTTTCAAATCTCACCAAGTATTTAAGCAAAGACCTTAGAGGTCATATGGAGTACTGCATTAAGAATGTGGAAGATGATTGGAATGGAGCATTCAATTATACGGGGAAGCTTGAATTCCTGTCTAATTGTATAAAAAACTCGAAAGGAGAAGTCAGTAGTCGAATATGTACAGCAGCGGAAATGAGGTACTATTTCTCGAGTTTCACTAACATTGGGATCACTGACGATGGGGTACCGCATCAGTTAACCTACTTGAAACCAAACCTGAACTGCAACTTGACCAATTGGGAAGCCGGATGCGAACCTGGTTGGGGTTGTAGTCTTGATGGTGAGGACAAGGTTGACCTCAAAGCTTCACACATTCCTGCTAGAACTACTGATTGCCAGCCTTGTTGTGAAGGTTTTTTCTGCCCTGAGGGAATCACTTGCATGATCCCTTGTCCTTTAGGTGCTTACTGTCCCCGTGCAAAACTAAACCAAACGAGTGGATTATGTGACCCATATACGTACCAAGTACCTGCAGGAGAACCAAATCATACTTGTGGTGGTGCAGATGTTTGGACTGATGCGAGTAAAACTGATGTATTTTGTTCATCTGGTTCATACTGCCCCACTACGATAAAGAAATACACTTGCAGTAGTGGATTTTACTGCAGGATGGGTTCCACATATCAAAAACCATGCTTGAAGTTGACTGACTGTGGTCGAGGTACTGCAAATCAAAAGATTCATGCATACGGGATCTTCCTTGTTGTTGCACTGAGTTTTATTTTGATCATAATTTATAACTGCTCTGATCAAGTTCTTCTGATTCGGGAAAGAAAAGCAGCTAAGTCTAGGGAAGCTGCAGCAAGACATGCACGAGAAACTGCACAAGCACGCGAAAGATGGAAAGCTGCAAAAGATGGCCTTAAGAAGCGTAAAGTGGGATTGCAAGAGCAGATGTCCCGCACATTTTCTCGCAAAAAATCTGCAAGGAATTCAGAGCCTCTGAAGATTTCAGGTCATCTTAAACCTGGTACAGATAATACTTCAACAGCACCTAAGATACCTGGTACATTAAGCTCATCTGAGCAATTATCACCAGCTTCAAAATCAAAGAATAAGGAACCAAGCAACCTTACCAAAATGTTGCAATCCCTAGACGATGATCCGCATGGTACTGAAGGCTTTAATCTTCAGATTGGTGATAAAAATATTAAAAAGCAAGCCCCAAAAGTTAAAAATCTGCATACTCACAGTCAAATTTTTAAGTATGCATACGGGCAACTCGAGAAGGAGAAAGCTATGCAACAAGAAAGCAAGAACTTGACCTTTACGGGTATAATCCAAATGGCCAAGGACACTGAGGTCAAGACTCGCCCTGCGATCGAAGTAGATTTTAAAGATTTAACTCTCACTCTGAAAGGAAAAGATAAAAATCTTTTGAGGAGTGTTACTGGAAAACTTTTTCCTGGTCGAGTTTCAGCAGTCATGGGCCCTTCAGGAGCTGGGAAAACAACATTTCTGTCTGCATTATCAGGAAAAGTAGCTGCATGCACTGTGACAGGTTCAATTCTAATAAATGGAAAAGCTGAACCAATGACTGCCTACAAGAGAATCATTGGCTTTGTGCCTCAAGACGATATTGTGCATGGAAACTTGACTGTGGAGGAGAATCTCCGATTTAGTGCAAGGTGCAGCTATTCCTTATTCAGGATGTTTGATGATTTCATTCTTTTAGCCAAAGGTGGTCTTACTGTATATCATGGATCTGTAAAGAAAGTTGAAGAGTATTTTGCTGGCATCGGGATTGTTGTACCAGAACGTGTTAATCCTCCGGACTACTTCATTGACATTTTGGAAGGTATAGTGAAACCAAGCTCAGGTGTGAATCATGAAGAACTTCCAGTTAGATGGATGCTACATAATGGGTACCCAGTACCTCAAGATATGATGCACTATCTAGATGGAATTGCTGCAAGCTCAGCAGGCCCAAAACCTGTAATGAGGAGAGATCAATCTTTTGCTGGAGATTTGTGGCGGGATGTGAAGACTAATGTTGAGGTGAAAAAAGATCACTTAAGACATAACTTCCTAGTGTCCCAGGATTTTTCAGACCGAATTACTCCTGGTATCTTCCGGCAGTACAGATATTACCTAGGGAGGGTAGGTAAGCAGCGGCTACGAGACGCTCAAATGCTGGCAGCGGATTATCTGATTATGTTACTTGCCGGAGCCATCTTAGGGATTTTTTCAAAAATGAATGATGAAACATTTGGTTTCAACGGCTACACTTACACTGTCATTGCTGTTTCACTACTTTGCAAAATATCAGCATTGAGAACCTTCTCTCTTGACAAATTACACTACTGGAGAGAGAGTGCATCTGGGATCAGCAGTCTGGCTCATTTTCTATCCAAAGATACAATGGACCATTTCAATACAGTCATCAAACCTTTGGTGTATCTATCCACATTCTATTTCTTTAGCAACCCAAGGTCATCGTTTCAAGACAATTACATTGTTTTGCTCTGCCTTGTGTACTGTACGACTGGCATAGGTTACGCACTTGCCATCTACCTTGATCCGAGTCCTGCCCAACTGAGCTCGGTGCTTCTTCCGGTTGTATTGACCCTCATTGCAACCCAAGCTAAAGATAGTAAAATTGCAGGGCATGTAGCCAAGTTTTGCTACACAAAGTGGGCACTAGAAGCTTTTGTTATTGCAAATGCTGAAAGGTACTCTGGGGTGTGGCTGATCAGTCGCTGCACGGCATTATATAGAAGAGGCTATGACCTTAATGATTGGACCCTCTGTATAGTCACCCTCATAGTGATCGGTTTACTTACTCGTATCTTGGCTTTCATTCTGTTATTGATAACTCAAAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

1013

Amino Acids

113.04

Weight (kDa)

9.08

Isoelectric Point (pI)

33.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	531 - 621	4.6e-11	ABC transporter
ABC2_membrane_7	PF19055	615 - 1013	9.1e-210	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37010 AT2G37010
fragaria_vesca	FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150
malus_domestica	MD12G1115400.v1.1
prunus_persica	Prupe.6G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469991
rosa_laevigata	RLG00000024306
rosa_multiflora	Rmu_sc0000831.1_g000026 Rmu_sc0003342.1_g000004 Rmu_sc0007963.1_g000003 Rmu_sc0008347.1_g000006 Rmu_sc0020091.1_g000002 Rmu_ssc0000397.1_g000046
rosa_roxburghii	Rroxscaffold_6G00411310
rosa_rugosa	Rorug03G0105900 Rorug03G0105900
rosa_samantha	Rh1AG175800 Rh1CG163700 Rh2BG425000 Rh3AG155000 Rh3BG179100 Rh3CG169700 Rh3DG196100 Rh4CG158900 Rh5AG391600 Rh5CG032200 Rh7CG425900
rosa_wichuraiana	Rw3G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
AasI	GACNNNNNNGTC	1 cut(s)	1514
Acc36I	ACCTGC	1 cut(s)	691
Acc65I	GGTACC	2 cut(s)	397, 2079
AccB1I	GGYRCC	2 cut(s)	397, 2079
AccII	CGCG	1 cut(s)	1047
AccIII	TCCGGA	1 cut(s)	1984
AciI	CCGC	7 cut(s)	341, 401, 1114, 1319, 2188, 2326, 2354
AclWI	GGATC	8 cut(s)	29, 389, 592, 914, 1310, 1924, 2546, 2726
AcoI	YGGCCR	2 cut(s)	126, 1500
AcsI	RAATTY	3 cut(s)	278, 1144, 1410
AcuI	CTGAAG	4 cut(s)	1178, 1328, 1350, 1632
AdeI	CACNNNGTG	1 cut(s)	2847
AfiI	CCNNNNNNNGG	6 cut(s)	18, 476, 1860, 2030, 2311, 2391
AflII	CTTAAG	2 cut(s)	1076, 2227
AflIII	ACRYGT	1 cut(s)	1972
AjnI	CCWGG	7 cut(s)	90, 469, 1180, 1216, 1618, 2250, 2275
Alw21I	GWGCWC	2 cut(s)	11, 2756
Alw26I	GTCTC	1 cut(s)	2328
AlwI	GGATC	8 cut(s)	29, 389, 592, 914, 1310, 1924, 2546, 2726
AlwNI	CAGNNNCTG	2 cut(s)	1655, 2913
Ama87I	CYCGRG	2 cut(s)	361, 1436
Aor13HI	TCCGGA	1 cut(s)	1984
AoxI	GGCC	5 cut(s)	126, 1072, 1500, 1642, 2137
ApaI	GGGCCC	1 cut(s)	1646
ApoI	RAATTY	3 cut(s)	278, 1144, 1410
Asp700I	GAANNNNTTC	1 cut(s)	2049
Asp718I	GGTACC	2 cut(s)	397, 2079
AspA2I	CCTAGG	1 cut(s)	2305
AspS9I	GGNCC	5 cut(s)	1642, 1643, 2138, 2578, 2955
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	6 cut(s)	169, 506, 1239, 1364, 2224, 2962
AvaI	CYCGRG	2 cut(s)	361, 1436
AvaII	GGWCC	2 cut(s)	2578, 2955
AvrII	CCTAGG	1 cut(s)	2305
AxyI	CCTNAGG	1 cut(s)	579
BaeGI	GKGCMC	2 cut(s)	1646, 2854
BalI	TGGCCA	1 cut(s)	1502
BanI	GGYRCC	2 cut(s)	397, 2079
BanII	GRGCYC	4 cut(s)	11, 31, 1646, 2756
BauI	CACGAG	1 cut(s)	1026
BbsI	GAAGAC	1 cut(s)	2204
Bbv12I	GWGCWC	2 cut(s)	11, 2756
BccI	CCATC	9 cut(s)	386, 485, 817, 1047, 1064, 2055, 2108, 2393, 2729
BceAI	ACGGC	3 cut(s)	61, 2449, 2934
BciT130I	CCWGG	7 cut(s)	92, 471, 1182, 1218, 1620, 2252, 2277
BclI	TGATCA	3 cut(s)	939, 961, 2904
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	2328
BfaI	CTAG	7 cut(s)	534, 1002, 1307, 2111, 2243, 2306, 2855
BfmI	CTRYAG	3 cut(s)	684, 817, 1011
BfrI	CTTAAG	2 cut(s)	1076, 2227
BfuAI	ACCTGC	1 cut(s)	691
BlnI	CCTAGG	1 cut(s)	2305
BlpI	GCTNAGC	1 cut(s)	2131
BmcAI	AGTACT	1 cut(s)	218
Bme1390I	CCNGG	8 cut(s)	92, 125, 471, 1182, 1218, 1620, 2252, 2277
Bme18I	GGWCC	2 cut(s)	2578, 2955
BmeT110I	CYCGRG	2 cut(s)	361, 1436
BmgT120I	GGNCC	5 cut(s)	1642, 1643, 2138, 2578, 2955
BmiI	GGNNCC	7 cut(s)	399, 829, 1275, 1644, 2081, 2383, 2957
BmrFI	CCNGG	8 cut(s)	92, 125, 471, 1182, 1218, 1620, 2252, 2277
BmrI	ACTGGG	1 cut(s)	2078
BmsI	GCATC	7 cut(s)	412, 452, 721, 1959, 2055, 2091, 2540
BmuI	ACTGGG	1 cut(s)	2078
BoxI	GACNNNNGTC	1 cut(s)	867
BpiI	GAAGAC	1 cut(s)	2204
BpmI	CTGGAG	2 cut(s)	2196, 2539
Bpu10I	CCTNAGC	1 cut(s)	2029
Bpu1102I	GCTNAGC	1 cut(s)	2131
BpuEI	CTTGAG	2 cut(s)	1767, 2076
BpuMI	CCSGG	1 cut(s)	125
BsaAI	YACGTR	1 cut(s)	672
BsaBI	GATNNNNATC	1 cut(s)	1584
BsaJI	CCNNGG	4 cut(s)	1503, 2250, 2305, 2642
BsaWI	WCCGGW	2 cut(s)	1984, 2767
BsaXI	ACNNNNNCTCC	4 cut(s)	2302, 2332, 2512, 2542
Bsc4I	CCNNNNNNNGG	6 cut(s)	18, 476, 1860, 2030, 2311, 2391
Bse1I	ACTGG	5 cut(s)	1609, 2054, 2084, 2522, 2704
Bse21I	CCTNAGG	1 cut(s)	579
Bse3DI	GCAATG	2 cut(s)	2451, 2784
Bse8I	GATNNNNATC	1 cut(s)	1584
BseAI	TCCGGA	1 cut(s)	1984
BseBI	CCWGG	7 cut(s)	92, 471, 1182, 1218, 1620, 2252, 2277
BseDI	CCNNGG	4 cut(s)	1503, 2250, 2305, 2642
BseGI	GGATG	5 cut(s)	467, 828, 1869, 2070, 2197
BseJI	GATNNNNATC	1 cut(s)	1584
BseLI	CCNNNNNNNGG	6 cut(s)	18, 476, 1860, 2030, 2311, 2391
BseMI	GCAATG	2 cut(s)	2451, 2784
BseMII	CTCAG	8 cut(s)	161, 570, 917, 1227, 1503, 2043, 2145, 2741
BseNI	ACTGG	5 cut(s)	1609, 2054, 2084, 2522, 2704
BseRI	GAGGAG	3 cut(s)	1609, 1832, 2170
BseSI	GKGCMC	2 cut(s)	1646, 2854
BseYI	CCCAGC	1 cut(s)	1655
BsgI	GTGCAG	4 cut(s)	735, 1020, 1864, 2899
Bsh1236I	CGCG	1 cut(s)	1047
Bsh1285I	CGRYCG	1 cut(s)	1536
BshFI	GGCC	5 cut(s)	128, 1074, 1502, 1644, 2139
BshNI	GGYRCC	2 cut(s)	397, 2079
BsiEI	CGRYCG	1 cut(s)	1536
BsiHKAI	GWGCWC	2 cut(s)	11, 2756
BsiHKCI	CYCGRG	2 cut(s)	361, 1436
BsiSI	CCGG	6 cut(s)	125, 459, 1985, 2287, 2379, 2768
BslFI	GGGAC	3 cut(s)	609, 1096, 2233
BslI	CCNNNNNNNGG	6 cut(s)	18, 476, 1860, 2030, 2311, 2391
BsmAI	GTCTC	1 cut(s)	2328
BsmBI	CGTCTC	1 cut(s)	2328
BsmFI	GGGAC	3 cut(s)	609, 1096, 2233
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	5 cut(s)	128, 1074, 1502, 1644, 2139
BsoBI	CYCGRG	2 cut(s)	361, 1436
Bsp120I	GGGCCC	1 cut(s)	1642
Bsp1286I	GDGCHC	5 cut(s)	11, 31, 1646, 2756, 2854
Bsp13I	TCCGGA	1 cut(s)	1984
Bsp1407I	TGTACA	1 cut(s)	332
Bsp1720I	GCTNAGC	1 cut(s)	2131
BspACI	CCGC	7 cut(s)	341, 401, 1114, 1319, 2188, 2326, 2354
BspANI	GGCC	5 cut(s)	128, 1074, 1502, 1644, 2139
BspCNI	CTCAG	8 cut(s)	160, 571, 918, 1228, 1504, 2042, 2144, 2742
BspEI	TCCGGA	1 cut(s)	1984
BspFNI	CGCG	1 cut(s)	1047
BspHI	TCATGA	1 cut(s)	2041
BspLI	GGNNCC	7 cut(s)	399, 829, 1275, 1644, 2081, 2383, 2957
BspMAI	CTGCAG	3 cut(s)	688, 821, 1015
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	8 cut(s)	29, 389, 592, 914, 1310, 1924, 2546, 2726
BspT107I	GGYRCC	2 cut(s)	397, 2079
BspTI	CTTAAG	2 cut(s)	1076, 2227
BsrDI	GCAATG	2 cut(s)	2451, 2784
BsrGI	TGTACA	1 cut(s)	332
BsrI	ACTGG	5 cut(s)	1609, 2054, 2084, 2522, 2704
BssECI	CCNNGG	4 cut(s)	1503, 2250, 2305, 2642
BssSI	CACGAG	1 cut(s)	1026
BssT1I	CCWWGG	3 cut(s)	1503, 2305, 2642
Bst2BI	CACGAG	1 cut(s)	1026
Bst2UI	CCWGG	7 cut(s)	92, 471, 1182, 1218, 1620, 2252, 2277
Bst4CI	ACNGT	9 cut(s)	623, 866, 1406, 1708, 1813, 1906, 2449, 2593, 2693
Bst6I	CTCTTC	2 cut(s)	1929, 2926
BstAFI	CTTAAG	2 cut(s)	1076, 2227
BstAPI	GCANNNNNTGC	1 cut(s)	1022
BstAUI	TGTACA	1 cut(s)	332
BstBAI	YACGTR	1 cut(s)	672
BstC8I	GCNNGC	9 cut(s)	164, 551, 1045, 1374, 1702, 1948, 2128, 2137, 2349
BstENI	CCTNNNNNAGG	1 cut(s)	1858
BstF5I	GGATG	5 cut(s)	467, 828, 1869, 2070, 2197
BstFNI	CGCG	1 cut(s)	1047
BstMAI	GTCTC	1 cut(s)	2328
BstMCI	CGRYCG	1 cut(s)	1536
BstMWI	GCNNNNNNNGC	6 cut(s)	87, 1022, 2132, 2136, 2795, 2858
BstNI	CCWGG	7 cut(s)	92, 471, 1182, 1218, 1620, 2252, 2277
BstNSI	RCATGY	3 cut(s)	1025, 1704, 2825
BstPAI	GACNNNNGTC	1 cut(s)	867
BstSCI	CCNGG	8 cut(s)	90, 123, 469, 1180, 1216, 1618, 2250, 2275
BstSFI	CTRYAG	3 cut(s)	684, 817, 1011
BstSLI	GKGCMC	2 cut(s)	1646, 2854
BstSNI	TACGTA	1 cut(s)	672
BstUI	CGCG	1 cut(s)	1047
BstV2I	GAAGAC	1 cut(s)	2204
BstX2I	RGATCY	2 cut(s)	906, 1916
BstXI	CCANNNNNNTGG	2 cut(s)	650, 2061
BstYI	RGATCY	2 cut(s)	906, 1916
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	5 cut(s)	128, 1074, 1502, 1644, 2139
BtsCI	GGATG	5 cut(s)	467, 828, 1869, 2070, 2197
BtsIMutI	CAGTG	5 cut(s)	384, 923, 1509, 1704, 2445
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	9 cut(s)	164, 551, 1045, 1374, 1702, 1948, 2128, 2137, 2349
CaiI	CAGNNNCTG	2 cut(s)	1655, 2913
CciI	TCATGA	1 cut(s)	2041
Cfr13I	GGNCC	5 cut(s)	1642, 1643, 2138, 2578, 2955
CseI	GACGC	1 cut(s)	2345
CsiI	ACCWGGT	3 cut(s)	469, 1180, 1216
DraI	TTTAAA	1 cut(s)	1549
DraIII	CACNNNGTG	1 cut(s)	2847
DrdI	GACNNNNNNGTC	1 cut(s)	1514
DseDI	GACNNNNNNGTC	1 cut(s)	1514
EaeI	YGGCCR	2 cut(s)	126, 1500
Eam1104I	CTCTTC	2 cut(s)	1929, 2926
EarI	CTCTTC	2 cut(s)	1929, 2926
Ecl136II	GAGCTC	2 cut(s)	9, 2754
Eco105I	TACGTA	1 cut(s)	672
Eco130I	CCWWGG	3 cut(s)	1503, 2305, 2642
Eco24I	GRGCYC	4 cut(s)	11, 31, 1646, 2756
Eco47I	GGWCC	2 cut(s)	2578, 2955
Eco53kI	GAGCTC	2 cut(s)	9, 2754
Eco57I	CTGAAG	4 cut(s)	1178, 1328, 1350, 1632
Eco81I	CCTNAGG	1 cut(s)	579
Eco88I	CYCGRG	2 cut(s)	361, 1436
EcoICRI	GAGCTC	2 cut(s)	9, 2754
EcoNI	CCTNNNNNAGG	1 cut(s)	1858
EcoO109I	RGGNCCY	1 cut(s)	1643
EcoRI	GAATTC	2 cut(s)	278, 1144
EcoRII	CCWGG	7 cut(s)	90, 469, 1180, 1216, 1618, 2250, 2275
EcoT14I	CCWWGG	3 cut(s)	1503, 2305, 2642
EcoT22I	ATGCAT	2 cut(s)	901, 1426
EcoT38I	GRGCYC	4 cut(s)	11, 31, 1646, 2756
ErhI	CCWWGG	3 cut(s)	1503, 2305, 2642
Esp3I	CGTCTC	1 cut(s)	2328
FalI	AAGNNNNNCTT	4 cut(s)	1059, 1091, 1884, 1916
FaqI	GGGAC	3 cut(s)	609, 1096, 2233
FauI	CCCGC	2 cut(s)	1121, 2181
FauNDI	CATATG	1 cut(s)	210
FbaI	TGATCA	3 cut(s)	939, 961, 2904
FokI	GGATG	5 cut(s)	474, 835, 1876, 2077, 2204
FriOI	GRGCYC	4 cut(s)	11, 31, 1646, 2756
FspBI	CTAG	7 cut(s)	534, 1002, 1307, 2111, 2243, 2306, 2855
GsaI	CCCAGC	1 cut(s)	1659
GsuI	CTGGAG	2 cut(s)	2196, 2539
HaeIII	GGCC	5 cut(s)	128, 1074, 1502, 1644, 2139
HapII	CCGG	6 cut(s)	125, 459, 1985, 2287, 2379, 2768
HgaI	GACGC	1 cut(s)	2345
HincII	GTYRAC	3 cut(s)	411, 508, 858
HindII	GTYRAC	3 cut(s)	411, 508, 858
HindIII	AAGCTT	4 cut(s)	164, 272, 516, 2859
HinfI	GANTC	8 cut(s)	585, 892, 976, 1522, 1764, 1822, 2038, 2737
HpaI	GTTAAC	1 cut(s)	411
HpaII	CCGG	6 cut(s)	125, 459, 1985, 2287, 2379, 2768
HphI	GGTGA	6 cut(s)	169, 506, 1239, 1364, 2224, 2962
Hpy166II	GTNNAC	5 cut(s)	411, 508, 858, 2689, 2990
Hpy8I	GTNNAC	5 cut(s)	411, 508, 858, 2689, 2990
Hpy99I	CGWCG	1 cut(s)	62
HpyAV	CCTTC	6 cut(s)	557, 1325, 1435, 1656, 2003, 2503
HpyCH4III	ACNGT	9 cut(s)	623, 866, 1406, 1708, 1813, 1906, 2449, 2593, 2693
HpyCH4IV	ACGT	2 cut(s)	671, 1972
HpyF10VI	GCNNNNNNNGC	6 cut(s)	87, 1022, 2132, 2136, 2795, 2858
HpySE526I	ACGT	2 cut(s)	671, 1972
Kpn2I	TCCGGA	1 cut(s)	1984
KpnI	GGTACC	2 cut(s)	401, 2083
Ksp22I	TGATCA	3 cut(s)	939, 961, 2904
KspAI	GTTAAC	1 cut(s)	411
LmnI	GCTCC	5 cut(s)	6, 14, 251, 1652, 2381
LweI	GCATC	7 cut(s)	412, 452, 721, 1959, 2055, 2091, 2540
MabI	ACCWGGT	3 cut(s)	469, 1180, 1216
MaeI	CTAG	7 cut(s)	534, 1002, 1307, 2111, 2243, 2306, 2855
MaeII	ACGT	2 cut(s)	671, 1972
MaeIII	GTNAC	7 cut(s)	142, 659, 1600, 1708, 2370, 2708, 2968
MfeI	CAATTG	1 cut(s)	448
MflI	RGATCY	2 cut(s)	906, 1916
MhlI	GDGCHC	5 cut(s)	11, 31, 1646, 2756, 2854
MlsI	TGGCCA	1 cut(s)	1502
MluNI	TGGCCA	1 cut(s)	1502
MlyI	GAGTC	2 cut(s)	1516, 2746
Mox20I	TGGCCA	1 cut(s)	1502
Mph1103I	ATGCAT	2 cut(s)	901, 1426
MroI	TCCGGA	1 cut(s)	1984
MroXI	GAANNNNTTC	1 cut(s)	2049
MscI	TGGCCA	1 cut(s)	1502
MslI	CAYNNNNRTG	2 cut(s)	593, 705
Msp20I	TGGCCA	1 cut(s)	1502
MspA1I	CMGCKG	3 cut(s)	341, 2326, 2354
MspCI	CTTAAG	2 cut(s)	1076, 2227
MspI	CCGG	6 cut(s)	125, 459, 1985, 2287, 2379, 2768
MspR9I	CCNGG	8 cut(s)	92, 125, 471, 1182, 1218, 1620, 2252, 2277
MunI	CAATTG	1 cut(s)	448
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	7 cut(s)	92, 471, 1182, 1218, 1620, 2252, 2277
MvnI	CGCG	1 cut(s)	1047
MwoI	GCNNNNNNNGC	6 cut(s)	87, 1022, 2132, 2136, 2795, 2858
NciI	CCSGG	1 cut(s)	125
NdeI	CATATG	1 cut(s)	210
NlaIV	GGNNCC	7 cut(s)	399, 829, 1275, 1644, 2081, 2383, 2957
NmuCI	GTSAC	3 cut(s)	659, 1708, 2968
NsiI	ATGCAT	2 cut(s)	901, 1426
NspI	RCATGY	3 cut(s)	1025, 1704, 2825
PaeI	GCATGC	1 cut(s)	1704
PaeR7I	CTCGAG	2 cut(s)	361, 1436
PagI	TCATGA	1 cut(s)	2041
PcsI	WCGNNNNNNNCGW	1 cut(s)	1434
PctI	GAATGC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	2049
PfeI	GAWTC	6 cut(s)	585, 892, 976, 1764, 1822, 2038
Ple19I	CGATCG	1 cut(s)	1536
PleI	GAGTC	2 cut(s)	1516, 2745
PpsI	GAGTC	2 cut(s)	1516, 2745
Ppu21I	YACGTR	1 cut(s)	672
PshAI	GACNNNNGTC	1 cut(s)	867
PsiI	TTATAA	1 cut(s)	951
Psp124BI	GAGCTC	2 cut(s)	11, 2756
Psp6I	CCWGG	7 cut(s)	90, 469, 1180, 1216, 1618, 2250, 2275
PspFI	CCCAGC	1 cut(s)	1655
PspGI	CCWGG	7 cut(s)	90, 469, 1180, 1216, 1618, 2250, 2275
PspN4I	GGNNCC	7 cut(s)	399, 829, 1275, 1644, 2081, 2383, 2957
PspOMI	GGGCCC	1 cut(s)	1642
PspPI	GGNCC	5 cut(s)	1642, 1643, 2138, 2578, 2955
PstI	CTGCAG	3 cut(s)	688, 821, 1015
PstNI	CAGNNNCTG	2 cut(s)	1655, 2913
PsuI	RGATCY	2 cut(s)	906, 1916
PvuI	CGATCG	1 cut(s)	1536
RseI	CAYNNNNRTG	2 cut(s)	593, 705
SacI	GAGCTC	2 cut(s)	11, 2756
Sau96I	GGNCC	5 cut(s)	1642, 1643, 2138, 2578, 2955
SbfI	CCTGCAGG	1 cut(s)	688
ScaI	AGTACT	1 cut(s)	218
SchI	GAGTC	2 cut(s)	1516, 2746
ScrFI	CCNGG	8 cut(s)	92, 125, 471, 1182, 1218, 1620, 2252, 2277
SdaI	CCTGCAGG	1 cut(s)	688
SduI	GDGCHC	5 cut(s)	11, 31, 1646, 2756, 2854
SexAI	ACCWGGT	3 cut(s)	469, 1180, 1216
SfaNI	GCATC	7 cut(s)	412, 452, 721, 1959, 2055, 2091, 2540
SfcI	CTRYAG	3 cut(s)	684, 817, 1011
Sfr274I	CTCGAG	2 cut(s)	361, 1436
SinI	GGWCC	2 cut(s)	2578, 2955
SlaI	CTCGAG	2 cut(s)	361, 1436
SmiMI	CAYNNNNRTG	2 cut(s)	593, 705
SmlI	CTYRAG	6 cut(s)	361, 1076, 1436, 1782, 2091, 2227
SmoI	CTYRAG	6 cut(s)	361, 1076, 1436, 1782, 2091, 2227
SnaBI	TACGTA	1 cut(s)	672
SphI	GCATGC	1 cut(s)	1704
Sse8387I	CCTGCAGG	1 cut(s)	688
SsiI	CCGC	7 cut(s)	341, 401, 1114, 1319, 2188, 2326, 2354
SspI	AATATT	1 cut(s)	1363
SspMI	CTAG	7 cut(s)	534, 1002, 1307, 2111, 2243, 2306, 2855
SstI	GAGCTC	2 cut(s)	11, 2756
StyD4I	CCNGG	8 cut(s)	90, 123, 469, 1180, 1216, 1618, 2250, 2275
StyI	CCWWGG	3 cut(s)	1503, 2305, 2642
TaaI	ACNGT	9 cut(s)	623, 866, 1406, 1708, 1813, 1906, 2449, 2593, 2693
TaiI	ACGT	2 cut(s)	674, 1975
TaqI	TCGA	7 cut(s)	305, 325, 362, 871, 1437, 1536, 1624
TaqII	GACCGA	1 cut(s)	2280
TatI	WGTACW	4 cut(s)	216, 332, 2292, 2688
TauI	GCSGC	1 cut(s)	2329
TfiI	GAWTC	6 cut(s)	585, 892, 976, 1764, 1822, 2038
TscAI	CASTG	5 cut(s)	391, 930, 1516, 1711, 2452
TseFI	GTSAC	3 cut(s)	659, 1708, 2968
Tsp45I	GTSAC	3 cut(s)	659, 1708, 2968
TspRI	CASTG	5 cut(s)	391, 930, 1516, 1711, 2452
Vha464I	CTTAAG	2 cut(s)	1076, 2227
VpaK11BI	GGWCC	2 cut(s)	2578, 2955
XagI	CCTNNNNNAGG	1 cut(s)	1858
XapI	RAATTY	3 cut(s)	278, 1144, 1410
XbaI	TCTAGA	1 cut(s)	2110
XceI	RCATGY	3 cut(s)	1025, 1704, 2825
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2572
XhoI	CTCGAG	2 cut(s)	361, 1436
XmaJI	CCTAGG	1 cut(s)	2305
XmnI	GAANNNNTTC	1 cut(s)	2049
XspI	CTAG	7 cut(s)	534, 1002, 1307, 2111, 2243, 2306, 2855
ZrmI	AGTACT	1 cut(s)	218
Zsp2I	ATGCAT	2 cut(s)	901, 1426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.