Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0003497

Physical Location & Seq

Genomic Coordinates Forward (+)

67897809 .. 67899888

Gene Structure 2080 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG391600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGAGATATCGAAGGGCAATCATGGGTCCTTCAGGAGCTGGGAAAACAACATTTCTTTCTGCATTATCAGGAAAAGTAACTGGATGCACTGTGACAGGTTCAATTCTAATAAATGGAAAAGCTGAACCAATGACTGCCTACAAGAGAATCATTGGCTTTGTGCCTCAAGATGATATTGTGCATGGAAACTTGACTGTGGAGGAGAATCTCCGATTTAGTGCAAGGTGCAGACTGTCTGCCAACATGCCAAAACCTGATAAAGTTCTGGTTGTTGAAAGAGTTATTGAGGCTCTGGGACTAGGGGCACTGAGAGATTCCATGGTAGGTACTGTGGAGAGGTGTGGAATCTCTAGGGGTAAAGGACTGGGCAAGCAGTACATAAATCAAACTAAGTACAGTAGCTTGGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

136

Amino Acids

14.66

Weight (kDa)

9.96

Isoelectric Point (pI)

25.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	5 - 118	1.2e-12	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0003497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37010 AT2G37010
fragaria_vesca	FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150
malus_domestica	MD12G1115400.v1.1
prunus_persica	Prupe.6G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469991
rosa_laevigata	RLG00000024306
rosa_multiflora	Rmu_sc0000831.1_g000026 Rmu_sc0003342.1_g000004 Rmu_sc0007963.1_g000003 Rmu_sc0008347.1_g000006 Rmu_sc0020091.1_g000002 Rmu_ssc0000397.1_g000046
rosa_roxburghii	Rroxscaffold_6G00411310
rosa_rugosa	Rorug03G0105900 Rorug03G0105900
rosa_samantha	Rh1AG175800 Rh1CG163700 Rh2BG425000 Rh3AG155000 Rh3BG179100 Rh3CG169700 Rh3DG196100 Rh4CG158900 Rh5AG391600 Rh5CG032200 Rh7CG425900
rosa_wichuraiana	Rw3G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	15
AfaI	GTAC	3 cut(s)	328, 377, 395
AgsI	TTSAA	2 cut(s)	102, 275
AluBI	AGCT	3 cut(s)	38, 122, 402
AluI	AGCT	3 cut(s)	38, 122, 402
AlwNI	CAGNNNCTG	1 cut(s)	38
AspS9I	GGNCC	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	26
BaeGI	GKGCMC	1 cut(s)	307
BfaI	CTAG	2 cut(s)	299, 351
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	27
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	1 cut(s)	74
BmuI	ACTGGG	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	150
BsaJI	CCNNGG	1 cut(s)	318
Bse1I	ACTGG	2 cut(s)	85, 369
BseDI	CCNNGG	1 cut(s)	318
BseGI	GGATG	1 cut(s)	89
BseMII	CTCAG	1 cut(s)	299
BseNI	ACTGG	2 cut(s)	85, 369
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	307
BseYI	CCCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	247
BslFI	GGGAC	1 cut(s)	309
BsmFI	GGGAC	1 cut(s)	309
Bsp1286I	GDGCHC	1 cut(s)	307
Bsp19I	CCATGG	1 cut(s)	318
BspCNI	CTCAG	1 cut(s)	300
BspLI	GGNNCC	1 cut(s)	27
BsrI	ACTGG	2 cut(s)	85, 369
BssECI	CCNNGG	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	318
Bst4CI	ACNGT	5 cut(s)	91, 196, 234, 331, 398
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	2 cut(s)	308, 390
BstDSI	CCRYGG	1 cut(s)	318
BstF5I	GGATG	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	247
BstSLI	GKGCMC	1 cut(s)	307
BtgI	CCRYGG	1 cut(s)	318
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	87, 305
Cac8I	GCNNGC	1 cut(s)	371
CaiI	CAGNNNCTG	1 cut(s)	38
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	3 cut(s)	327, 376, 394
CviAII	CATG	4 cut(s)	22, 182, 244, 319
CviJI	RGCY	5 cut(s)	38, 122, 156, 290, 402
CviKI_1	RGCY	5 cut(s)	38, 122, 156, 290, 402
CviQI	GTAC	3 cut(s)	327, 376, 394
DdeI	CTNAG	2 cut(s)	308, 390
Eco130I	CCWWGG	1 cut(s)	318
Eco32I	GATATC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	15
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRV	GATATC	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	318
ErhI	CCWWGG	1 cut(s)	318
FaeI	CATG	4 cut(s)	25, 185, 247, 322
FaiI	YATR	6 cut(s)	23, 183, 245, 320, 380, 409
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	4 cut(s)	21, 181, 243, 318
FokI	GGATG	1 cut(s)	96
FspBI	CTAG	2 cut(s)	299, 351
GsaI	CCCAGC	1 cut(s)	42
Hin1II	CATG	4 cut(s)	25, 185, 247, 322
HinfI	GANTC	4 cut(s)	147, 205, 314, 345
Hpy188I	TCNGA	1 cut(s)	212
Hpy188III	TCNNGA	3 cut(s)	33, 69, 167
HpyAV	CCTTC	2 cut(s)	6, 39
HpyCH4III	ACNGT	5 cut(s)	91, 196, 234, 331, 398
HpyCH4V	TGCA	5 cut(s)	62, 87, 181, 221, 228
HpyF3I	CTNAG	2 cut(s)	308, 390
Hsp92II	CATG	4 cut(s)	25, 185, 247, 322
LmnI	GCTCC	1 cut(s)	35
LpnPI	CCDG	9 cut(s)	18, 24, 54, 66, 81, 251, 267, 278, 350
LweI	GCATC	1 cut(s)	74
MaeI	CTAG	2 cut(s)	299, 351
MaeIII	GTNAC	2 cut(s)	76, 91
MhlI	GDGCHC	1 cut(s)	307
MluCI	AATT	1 cut(s)	102
MnlI	CCTC	4 cut(s)	174, 193, 280, 330
NcoI	CCATGG	1 cut(s)	318
NlaIII	CATG	4 cut(s)	25, 185, 247, 322
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	1 cut(s)	247
PfeI	GAWTC	4 cut(s)	147, 205, 314, 345
PpuMI	RGGWCCY	1 cut(s)	26
Psp5II	RGGWCCY	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	38
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	26
PspPPI	RGGWCCY	1 cut(s)	26
PstNI	CAGNNNCTG	1 cut(s)	38
RsaI	GTAC	3 cut(s)	328, 377, 395
RsaNI	GTAC	3 cut(s)	327, 376, 394
Sau96I	GGNCC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	307
SetI	ASST	8 cut(s)	40, 100, 124, 227, 256, 328, 341, 404
SfaNI	GCATC	1 cut(s)	74
SinI	GGWCC	1 cut(s)	26
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	1 cut(s)	102
SspMI	CTAG	2 cut(s)	299, 351
StyI	CCWWGG	1 cut(s)	318
TaaI	ACNGT	5 cut(s)	91, 196, 234, 331, 398
TaqI	TCGA	1 cut(s)	10
TasI	AATT	1 cut(s)	102
TatI	WGTACW	2 cut(s)	375, 393
TfiI	GAWTC	4 cut(s)	147, 205, 314, 345
TscAI	CASTG	2 cut(s)	94, 312
TseFI	GTSAC	1 cut(s)	91
Tsp45I	GTSAC	1 cut(s)	91
TspRI	CASTG	2 cut(s)	94, 312
VpaK11BI	GGWCC	1 cut(s)	26
XceI	RCATGY	1 cut(s)	247
XspI	CTAG	2 cut(s)	299, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.