Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003497

Physical Location & Seq

Genomic Coordinates Forward (+)

2095830 .. 2101350

Gene Structure 5521 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG032200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGGTCTTTCAGGAGCTGGGAAAACAACATTTCTTTCTGCGTTATCAGGAAAAGTAACTGGATGCACTGTGACAGGTTCAATTCTAATAAATGGAAAAGCTGAACCAATGACTGCCTACAAGAGAATCATTGGCTTTGTGCCTCAAGATGATATTGTGCATGGAAACTTGACTGTGGAGGAGAATCTCCGATTTAGTGCAAGGTGCAGGGATTTGTTGAATGCAAAAGAAAATGATCATGATGCTATTGCACTGGCATTTCTACTTATCTTCATACATGATTCTATTTGGTTGGGTACTTTCCTAGCTACACCCCACCCATTAGATATGATAGAAGAGCTTGCTCAGATTGCTGATCTGGAAGCAAGGTTTAAGAGTTCAACACAGGAGGTTGAAAGGGCTATTGTAGCCTGTGAGGGTGATATTCAGAAGGCTGCTCAAAGCTTAAGAGCATCAAAGCAAGACCCACCTTCCGATTTCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

161

Amino Acids

17.46

Weight (kDa)

5.14

Isoelectric Point (pI)

34.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	1 - 80	3.8e-09	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37010 AT2G37010
fragaria_vesca	FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150
malus_domestica	MD12G1115400.v1.1
prunus_persica	Prupe.6G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469991
rosa_laevigata	RLG00000024306
rosa_multiflora	Rmu_sc0000831.1_g000026 Rmu_sc0003342.1_g000004 Rmu_sc0007963.1_g000003 Rmu_sc0008347.1_g000006 Rmu_sc0020091.1_g000002 Rmu_ssc0000397.1_g000046
rosa_roxburghii	Rroxscaffold_6G00411310
rosa_rugosa	Rorug03G0105900 Rorug03G0105900
rosa_samantha	Rh1AG175800 Rh1CG163700 Rh2BG425000 Rh3AG155000 Rh3BG179100 Rh3CG169700 Rh3DG196100 Rh4CG158900 Rh5AG391600 Rh5CG032200 Rh7CG425900
rosa_wichuraiana	Rw3G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	298
AflII	CTTAAG	1 cut(s)	445
AgsI	TTSAA	4 cut(s)	81, 220, 381, 395
AluBI	AGCT	5 cut(s)	17, 101, 308, 340, 444
AluI	AGCT	5 cut(s)	17, 101, 308, 340, 444
AlwNI	CAGNNNCTG	1 cut(s)	17
ApeKI	GCWGC	1 cut(s)	434
AsuHPI	GGTGA	2 cut(s)	431, 472
BbvI	GCAGC	1 cut(s)	421
BclI	TGATCA	1 cut(s)	235
BfaI	CTAG	1 cut(s)	305
BfrI	CTTAAG	1 cut(s)	445
BisI	GCNGC	1 cut(s)	435
BlsI	GCNGC	1 cut(s)	436
BmsI	GCATC	3 cut(s)	53, 232, 461
BpuEI	CTTGAG	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	64, 258
BseGI	GGATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	2 cut(s)	64, 258
BseRI	GAGGAG	1 cut(s)	194
BseXI	GCAGC	1 cut(s)	421
BseYI	CCCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	226
BsmI	GAATGC	1 cut(s)	226
Bsp143I	GATC	2 cut(s)	235, 355
BspCNI	CTCAG	1 cut(s)	358
BspHI	TCATGA	1 cut(s)	238
BspQI	GCTCTTC	1 cut(s)	330
BspTI	CTTAAG	1 cut(s)	445
BsrI	ACTGG	2 cut(s)	64, 258
BssMI	GATC	2 cut(s)	235, 355
Bst4CI	ACNGT	2 cut(s)	70, 175
Bst6I	CTCTTC	1 cut(s)	330
BstAFI	CTTAAG	1 cut(s)	445
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	238, 358
BstMBI	GATC	2 cut(s)	235, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	350, 407
BstV1I	GCAGC	1 cut(s)	421
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	66, 251
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	17
CciI	TCATGA	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	297
CviAII	CATG	3 cut(s)	161, 239, 278
CviJI	RGCY	9 cut(s)	17, 101, 135, 308, 340, 401, 410, 434, 444
CviKI_1	RGCY	9 cut(s)	17, 101, 135, 308, 340, 401, 410, 434, 444
CviQI	GTAC	1 cut(s)	297
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	2 cut(s)	237, 357
DpnII	GATC	2 cut(s)	235, 355
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
FaeI	CATG	3 cut(s)	164, 242, 281
FaiI	YATR	5 cut(s)	162, 240, 275, 279, 329
FatI	CATG	3 cut(s)	160, 238, 277
FbaI	TGATCA	1 cut(s)	235
Fnu4HI	GCNGC	1 cut(s)	435
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	435
FspBI	CTAG	1 cut(s)	305
GluI	GCNGC	1 cut(s)	435
GsaI	CCCAGC	1 cut(s)	21
Hin1II	CATG	3 cut(s)	164, 242, 281
HindIII	AAGCTT	1 cut(s)	442
HinfI	GANTC	3 cut(s)	126, 184, 281
HphI	GGTGA	2 cut(s)	431, 472
Hpy188I	TCNGA	4 cut(s)	191, 348, 429, 475
Hpy188III	TCNNGA	5 cut(s)	12, 48, 146, 239, 359
HpyAV	CCTTC	2 cut(s)	424, 480
HpyCH4III	ACNGT	2 cut(s)	70, 175
HpyCH4V	TGCA	6 cut(s)	66, 160, 200, 207, 224, 251
HpyF10VI	GCNNNNNNNGC	2 cut(s)	350, 407
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	3 cut(s)	164, 242, 281
Ksp22I	TGATCA	1 cut(s)	235
Kzo9I	GATC	2 cut(s)	235, 355
LguI	GCTCTTC	1 cut(s)	330
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	9 cut(s)	3, 33, 45, 60, 193, 239, 344, 371, 424
Lsp1109I	GCAGC	1 cut(s)	421
LweI	GCATC	3 cut(s)	53, 232, 461
MaeI	CTAG	1 cut(s)	305
MaeIII	GTNAC	2 cut(s)	55, 70
MalI	GATC	2 cut(s)	237, 357
MboI	GATC	2 cut(s)	235, 355
MboII	GAAGA	2 cut(s)	262, 347
MluCI	AATT	1 cut(s)	81
MnlI	CCTC	4 cut(s)	153, 172, 382, 409
MseI	TTAA	2 cut(s)	372, 446
MspCI	CTTAAG	1 cut(s)	445
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	350, 407
NdeII	GATC	2 cut(s)	235, 355
NlaIII	CATG	3 cut(s)	164, 242, 281
NmuCI	GTSAC	1 cut(s)	70
PagI	TCATGA	1 cut(s)	238
PciSI	GCTCTTC	1 cut(s)	330
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	3 cut(s)	126, 184, 281
PkrI	GCNGC	1 cut(s)	436
PspFI	CCCAGC	1 cut(s)	17
PstNI	CAGNNNCTG	1 cut(s)	17
RsaI	GTAC	1 cut(s)	298
RsaNI	GTAC	1 cut(s)	297
SapI	GCTCTTC	1 cut(s)	330
SaqAI	TTAA	2 cut(s)	372, 446
SatI	GCNGC	1 cut(s)	435
Sau3AI	GATC	2 cut(s)	235, 355
SfaNI	GCATC	3 cut(s)	53, 232, 461
SmlI	CTYRAG	2 cut(s)	144, 445
SmoI	CTYRAG	2 cut(s)	144, 445
Sse9I	AATT	1 cut(s)	81
SspMI	CTAG	1 cut(s)	305
TaaI	ACNGT	2 cut(s)	70, 175
TasI	AATT	1 cut(s)	81
TfiI	GAWTC	3 cut(s)	126, 184, 281
Tru1I	TTAA	2 cut(s)	372, 446
Tru9I	TTAA	2 cut(s)	372, 446
TscAI	CASTG	2 cut(s)	73, 258
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	262
TspRI	CASTG	2 cut(s)	73, 258
Vha464I	CTTAAG	1 cut(s)	445
XspI	CTAG	1 cut(s)	305

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.