Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020091.1

Orthogroup ID

OG0003497

Physical Location & Seq

Genomic Coordinates Forward (+)

4983 .. 15070

Gene Structure 10088 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020091.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3786 bp

atggcaacactttccgtcggatgtagctaccttgctgtaccccagatccagcgatggcgacccccgtctagtctagcgatgccagacgtctggccctcttcttctcttccaaaggttgaggtgcagtttcgatttgggcttggatcaagaggcttcggttgtatcctggttgcagatgattataggaggcaatcgaggttagttccgatctggtatgggattgggtctagcattagttggctaccgctgatgcagatgggaaggccgctgaagatcatgttggaggtggagatgcaggggaaccctgatagtcaagatttggtttgggcctgggcctatgggcttgggttcagaatccacacgctcccctctcccagctattgtcgttgctctccagccctcgccgcgtttcggccttcatcctccattgtttggctatcacgcaaccgcctgttgctccttgcaagcggagcatttgaattttcaccattctcaattgcattgtcgtcggagaaggggctcattactcgagttttgttttggtggtgtcgcatgcaagtgaggatcagagcccgttggtttccccatgttgtgttcatcgtcgttttgagattgttgccgtgctttttgtgtcaggacgaagatgatttcagtaagaacaaaaacccggccacgcttcctcttgttactcagctcttggagagcaagctttcaaatctcaccaagtatttaagcaaagaccttagaggtcatatggagtactgcattaagaatgtggaagatgattggaatggagcattcaattatacggggaggcttgaattcctgtctaattgtataaaaaactcgaaaggagaagtcagtagtcgaatatgtacagcagcggaaatgaggtactatttctcgagtttcactaacattgggatcactgacgatggggtaccgcatcagttaacctacttgaaaccaaacctgaactgcaacttgaccaattgggaagccggatgcgaacctggttggggttgtagtcttgatggtgaggacaaggttgacctcaaagtttcacacattcctgctagaaccactgattgtcagccttgttgtgaaggttttttctgccctgagggaatcacttgcatgatccgtaaggctgtagatattgtatgtgatgatatcgaatcaaacctaatacctccttttcttttaaatgaagcttgtcctttaggtgcttactgtccccgtgcaaaactaaaccaaacgagtggattatgtgacccatatacttaccaagtacctgcaggagaaccaaatcatacttgtggtggtgcagatgtttggactgatgcgagtaaaactgatgtattttgttcatctggttcatactgccccactaccataaagaaatacacttgcagtagtggaaaagcagctaagtctagggaagctgcagcaagacatgcacgagaaactgcacaagcacgcgaaagatggaaagctgcaaaagaaggccttaagaagcgtaaagtgggattgcaagagcagatgtcccgcacattttctcgcaaaaaatctacaaggaattcagagcctctgaagatttcaggtcatcttaaacctggtacagatcatacttcaacagcacctaagatacctggtacattaagctcatctgagcaattatcaccagcttcaaaatcaaagaataaggaaccaagcaaccttacccaaatgttgcaatccctagacgatgatccgcatagtactgaaggctttaatcttcagattggtgataaaaatattaaaaggcaagccccaaaagttaaaaatctgcatactcacagtcaaatttttaagtatgcatatggccaactcgagaaggagaaagctatgcaacaagaaagcaagaacttgacctttacgggtataatccaaatggccaaggacactgaggtcaagactcgccctgcgatcgaagtagattttaaagatttaactctcactctgaaaggaaaagataaaaatcttttgaggtgtgttactggaaaactttttcctggtcgagtttcagcagtcatgggcccttcaggagctgggaaaacaacatttctgtctgcattatcaggaaaagtaactggatgcactgtgacaggttcaattctaataaatggaaaagctgaaccaatgactgcctacaagagaatcattggctttgtgcctcaagacgatgttgtgcacggaaacttgactgtggaggagaatctccgatttagtgcaaggtgcagactgtctgccaacatgccaaaacctgataaagtcctggttgttgaaagagttattgaggctctgggactaggggcagtgagagattccgtggttggtactgtggagaaacgtggaatctctggagggcaacggaaacgtgttaatgttgggttagagatggtcatggaaccttcattgctgatcttggatgagcctacgacgggtttggacagtgcatcttcccagttacttcttaaagcccttcgacgtgaagctcgtgaaggggtaaacatctgtatggtacttcaccagccaagctattccttattcaggatgtttgatgatttcattcttttagccaaaggtggtcttactgtatatcatggatctgtaaagaaagttgaagagtattttgctggcatcgggattgttgtaccagaacgtgttaatcctccggactacttcattgacattttggaaggtatagtgaaaccaagctcaggtgtgaatcatgaagaacttccagttagatggatgctacataatgggtacccagtgcctcaagatatgatgcactatctagatggaattgctgcaagctcagcaggcccaaaacctgtaatgaggagagatcaatcttttgctggagatttgtggcgggatgtgaagactaatgttgaggtgaaaaaagatcacttaagacataacttcctagtgtcccaggatttatcagaccgaattactcctggtatcttccggcagtacagatattacctagggagggtaggtaagcagcggcttcgagacgctcaaatgctggcagcggattatctgattatgttacttgccggagccatcttggggattttttcaaaaatgaatgatgaaacatttggtttcaacggctacacttatactgtcattgctgtttcactactttgcaaaatatcagcattgagaaccttctctcttgacaaattacactactggagagagagtgcatctgggatcagcagtctggctcattttctatccaaagatacaatggaccatttcaatacagtcatcaaacctttggtgtatctatccacattctatttctttagcaacccaaggtcatcgtttcaagacaattacattgttttgctctgccttgtgtactgtacgactggcataggttacgcacttgccatctaccttgacccgagtcctgcccaactgagctcagtgcttcttccggttgtattgaccctcattgcaacccaagctaaagacagtaaaattgcagggcatgtagccaagttttgctacacaaagtgggcactagaagcttttgttattgcaaatgccgaaaggtactctggggtgtggctgatcagtcgctgcacggcattatatagaagaggctatgaccttaatgattggaccctctgtctggtcaccctcgtgagtgagcaacattcttcagcaacaggaattgatggccaacattctaagcagaaatgtccatgcgtagacgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

1261

Amino Acids

140.42

Weight (kDa)

8.91

Isoelectric Point (pI)

39.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37010 AT2G37010
fragaria_vesca	FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150
malus_domestica	MD12G1115400.v1.1
prunus_persica	Prupe.6G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469991
rosa_laevigata	RLG00000024306
rosa_multiflora	Rmu_sc0000831.1_g000026 Rmu_sc0003342.1_g000004 Rmu_sc0007963.1_g000003 Rmu_sc0008347.1_g000006 Rmu_sc0020091.1_g000002 Rmu_ssc0000397.1_g000046
rosa_roxburghii	Rroxscaffold_6G00411310
rosa_rugosa	Rorug03G0105900 Rorug03G0105900
rosa_samantha	Rh1AG175800 Rh1CG163700 Rh2BG425000 Rh3AG155000 Rh3BG179100 Rh3CG169700 Rh3DG196100 Rh4CG158900 Rh5AG391600 Rh5CG032200 Rh7CG425900
rosa_wichuraiana	Rw3G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1949
AatII	GACGTC	1 cut(s)	90
Acc36I	ACCTGC	1 cut(s)	1303
Acc65I	GGTACC	2 cut(s)	940, 2811
AccB1I	GGYRCC	2 cut(s)	940, 2811
AccB7I	CCANNNNNTGG	1 cut(s)	432
AccI	GTMKAC	1 cut(s)	3777
AccII	CGCG	2 cut(s)	407, 1482
AccIII	TCCGGA	1 cut(s)	2716
AclWI	GGATC	8 cut(s)	40, 151, 572, 932, 1135, 1745, 2656, 3278
AcoI	YGGCCR	4 cut(s)	669, 1864, 1935, 3745
AcsI	RAATTY	4 cut(s)	479, 821, 1579, 1845
AcuI	CTGAAG	6 cut(s)	290, 1613, 1763, 1785, 2067, 3711
AcyI	GRCGYC	1 cut(s)	87
AdeI	CACNNNGTG	1 cut(s)	3579
AfiI	CCNNNNNNNGG	9 cut(s)	411, 432, 1019, 2483, 2592, 2762, 3043, 3123, 3697
AflII	CTTAAG	2 cut(s)	1511, 2959
AflIII	ACRYGT	2 cut(s)	2419, 2704
AhdI	GACNNNNNGTC	1 cut(s)	3693
AjiI	CACGTC	1 cut(s)	2531
AjnI	CCWGG	9 cut(s)	165, 329, 1012, 1615, 1651, 2053, 2316, 2982, 3007
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AleI	CACNNNNGTG	1 cut(s)	3707
Alw21I	GWGCWC	2 cut(s)	2235, 3488
Alw26I	GTCTC	1 cut(s)	3060
Alw44I	GTGCAC	1 cut(s)	2231
AlwI	GGATC	8 cut(s)	40, 151, 572, 932, 1135, 1745, 2656, 3278
AlwNI	CAGNNNCTG	2 cut(s)	2090, 3645
Ama87I	CYCGRG	4 cut(s)	528, 904, 1871, 3466
Aor13HI	TCCGGA	1 cut(s)	2716
ApaI	GGGCCC	1 cut(s)	2081
ApaLI	GTGCAC	1 cut(s)	2231
ApeKI	GCWGC	9 cut(s)	881, 1427, 1445, 1448, 1496, 2855, 3055, 3083, 3645
ApoI	RAATTY	4 cut(s)	479, 821, 1579, 1845
Asp700I	GAANNNNTTC	1 cut(s)	2781
Asp718I	GGTACC	2 cut(s)	940, 2811
AspA2I	CCTAGG	1 cut(s)	3037
AspS9I	GGNCC	8 cut(s)	93, 327, 333, 2077, 2078, 2870, 3310, 3687
AsuC2I	CCSGG	1 cut(s)	668
AsuHPI	GGTGA	8 cut(s)	477, 712, 1049, 1674, 1799, 2561, 2956, 3694
AvaI	CYCGRG	4 cut(s)	528, 904, 1871, 3466
AvaII	GGWCC	2 cut(s)	3310, 3687
AvrII	CCTAGG	1 cut(s)	3037
AxyI	CCTNAGG	1 cut(s)	1122
BaeGI	GKGCMC	3 cut(s)	2081, 2235, 3586
BalI	TGGCCA	3 cut(s)	1866, 1937, 3747
BanI	GGYRCC	2 cut(s)	940, 2811
BanII	GRGCYC	4 cut(s)	522, 574, 2081, 3488
BauI	CACGAG	3 cut(s)	1461, 2538, 3707
BbsI	GAAGAC	1 cut(s)	2936
Bbv12I	GWGCWC	2 cut(s)	2235, 3488
BbvI	GCAGC	9 cut(s)	893, 1432, 1439, 1460, 1483, 2842, 3067, 3095, 3632
BceAI	ACGGC	3 cut(s)	604, 3181, 3666
BcgI	CGANNNNNNTGC	4 cut(s)	489, 523, 3044, 3078
BciT130I	CCWGG	9 cut(s)	167, 331, 1014, 1617, 1653, 2055, 2318, 2984, 3009
BciVI	GTATCC	1 cut(s)	173
BclI	TGATCA	1 cut(s)	3636
BcnI	CCSGG	1 cut(s)	668
BcoDI	GTCTC	1 cut(s)	3060
BfmI	CTRYAG	3 cut(s)	1152, 1296, 1446
BfrI	CTTAAG	2 cut(s)	1511, 2959
BfuAI	ACCTGC	1 cut(s)	1303
BfuI	GTATCC	1 cut(s)	173
BlnI	CCTAGG	1 cut(s)	3037
BlpI	GCTNAGC	1 cut(s)	2863
BmcAI	AGTACT	2 cut(s)	761, 1762
Bme18I	GGWCC	2 cut(s)	3310, 3687
BmeRI	GACNNNNNGTC	1 cut(s)	3693
BmeT110I	CYCGRG	4 cut(s)	528, 904, 1871, 3466
BmgBI	CACGTC	1 cut(s)	2531
BmgT120I	GGNCC	8 cut(s)	93, 327, 333, 2077, 2078, 2870, 3310, 3687
BmiI	GGNNCC	8 cut(s)	302, 942, 1710, 2079, 2451, 2813, 3115, 3689
BmrI	ACTGGG	2 cut(s)	2500, 2810
BmuI	ACTGGG	2 cut(s)	2500, 2810
BoxI	GACNNNNGTC	2 cut(s)	64, 3468
BpiI	GAAGAC	1 cut(s)	2936
BpmI	CTGGAG	4 cut(s)	378, 2424, 2928, 3271
Bpu10I	CCTNAGC	1 cut(s)	2761
Bpu1102I	GCTNAGC	1 cut(s)	2863
BpuEI	CTTGAG	2 cut(s)	2202, 2808
BpuMI	CCSGG	1 cut(s)	668
BsaBI	GATNNNNATC	1 cut(s)	2019
BsaHI	GRCGYC	1 cut(s)	87
BsaJI	CCNNGG	6 cut(s)	330, 1938, 2370, 2982, 3037, 3374
BsaWI	WCCGGW	2 cut(s)	2716, 3499
BsaXI	ACNNNNNCTCC	4 cut(s)	3034, 3064, 3244, 3274
Bsc4I	CCNNNNNNNGG	9 cut(s)	411, 432, 1019, 2483, 2592, 2762, 3043, 3123, 3697
Bse1I	ACTGG	7 cut(s)	2044, 2137, 2506, 2786, 2816, 3254, 3436
Bse21I	CCTNAGG	1 cut(s)	1122
Bse3DI	GCAATG	3 cut(s)	2456, 3183, 3516
Bse8I	GATNNNNATC	1 cut(s)	2019
BseAI	TCCGGA	1 cut(s)	2716
BseBI	CCWGG	9 cut(s)	167, 331, 1014, 1617, 1653, 2055, 2318, 2984, 3009
BseDI	CCNNGG	6 cut(s)	330, 1938, 2370, 2982, 3037, 3374
BseGI	GGATG	8 cut(s)	26, 419, 1010, 2141, 2476, 2601, 2802, 2929
BseJI	GATNNNNATC	1 cut(s)	2019
BseLI	CCNNNNNNNGG	9 cut(s)	411, 432, 1019, 2483, 2592, 2762, 3043, 3123, 3697
BseMI	GCAATG	3 cut(s)	2456, 3183, 3516
BseMII	CTCAG	8 cut(s)	704, 1113, 1662, 1938, 2775, 2877, 3473, 3501
BseNI	ACTGG	7 cut(s)	2044, 2137, 2506, 2786, 2816, 3254, 3436
BseRI	GAGGAG	2 cut(s)	2267, 2902
BseSI	GKGCMC	3 cut(s)	2081, 2235, 3586
BseXI	GCAGC	9 cut(s)	893, 1432, 1439, 1460, 1483, 2842, 3067, 3095, 3632
BseYI	CCCAGC	2 cut(s)	374, 2090
BsgI	GTGCAG	5 cut(s)	143, 1347, 1455, 2299, 3631
Bsh1236I	CGCG	2 cut(s)	407, 1482
Bsh1285I	CGRYCG	1 cut(s)	1971
BshNI	GGYRCC	2 cut(s)	940, 2811
BsiEI	CGRYCG	1 cut(s)	1971
BsiHKAI	GWGCWC	2 cut(s)	2235, 3488
BsiHKCI	CYCGRG	4 cut(s)	528, 904, 1871, 3466
BsiSI	CCGG	6 cut(s)	668, 1002, 2717, 3019, 3111, 3500
BslFI	GGGAC	4 cut(s)	1221, 1531, 2361, 2965
BslI	CCNNNNNNNGG	9 cut(s)	411, 432, 1019, 2483, 2592, 2762, 3043, 3123, 3697
BsmAI	GTCTC	1 cut(s)	3060
BsmBI	CGTCTC	1 cut(s)	3060
BsmFI	GGGAC	4 cut(s)	1221, 1531, 2361, 2965
BsmI	GAATGC	1 cut(s)	797
BsoBI	CYCGRG	4 cut(s)	528, 904, 1871, 3466
Bsp120I	GGGCCC	1 cut(s)	2077
Bsp1286I	GDGCHC	6 cut(s)	522, 574, 2081, 2235, 3488, 3586
Bsp13I	TCCGGA	1 cut(s)	2716
Bsp1407I	TGTACA	1 cut(s)	875
Bsp1720I	GCTNAGC	1 cut(s)	2863
BspCNI	CTCAG	8 cut(s)	703, 1114, 1663, 1939, 2774, 2876, 3474, 3500
BspEI	TCCGGA	1 cut(s)	2716
BspFNI	CGCG	2 cut(s)	407, 1482
BspHI	TCATGA	1 cut(s)	2773
BspLI	GGNNCC	8 cut(s)	302, 942, 1710, 2079, 2451, 2813, 3115, 3689
BspMAI	CTGCAG	2 cut(s)	1300, 1450
BspMI	ACCTGC	1 cut(s)	1303
BspPI	GGATC	8 cut(s)	40, 151, 572, 932, 1135, 1745, 2656, 3278
BspT107I	GGYRCC	2 cut(s)	940, 2811
BspTI	CTTAAG	2 cut(s)	1511, 2959
BsrDI	GCAATG	3 cut(s)	2456, 3183, 3516
BsrGI	TGTACA	1 cut(s)	875
BsrI	ACTGG	7 cut(s)	2044, 2137, 2506, 2786, 2816, 3254, 3436
BssECI	CCNNGG	6 cut(s)	330, 1938, 2370, 2982, 3037, 3374
BssNI	GRCGYC	1 cut(s)	87
BssSI	CACGAG	3 cut(s)	1461, 2538, 3707
BssT1I	CCWWGG	3 cut(s)	1938, 3037, 3374
Bst2BI	CACGAG	3 cut(s)	1461, 2538, 3707
Bst2UI	CCWGG	9 cut(s)	167, 331, 1014, 1617, 1653, 2055, 2318, 2984, 3009
Bst6I	CTCTTC	4 cut(s)	103, 111, 2661, 3658
BstACI	GRCGYC	1 cut(s)	87
BstAFI	CTTAAG	2 cut(s)	1511, 2959
BstAPI	GCANNNNNTGC	1 cut(s)	1457
BstAUI	TGTACA	1 cut(s)	875
BstC8I	GCNNGC	9 cut(s)	466, 554, 707, 1480, 1809, 2680, 2860, 2869, 3081
BstDSI	CCRYGG	1 cut(s)	2370
BstEII	GGTNACC	1 cut(s)	3700
BstENI	CCTNNNNNAGG	1 cut(s)	2590
BstF5I	GGATG	8 cut(s)	26, 419, 1010, 2141, 2476, 2601, 2802, 2929
BstFNI	CGCG	2 cut(s)	407, 1482
BstMAI	GTCTC	1 cut(s)	3060
BstMCI	CGRYCG	1 cut(s)	1971
BstMWI	GCNNNNNNNGC	7 cut(s)	404, 470, 1457, 2864, 2868, 3527, 3590
BstNI	CCWGG	9 cut(s)	167, 331, 1014, 1617, 1653, 2055, 2318, 2984, 3009
BstNSI	RCATGY	4 cut(s)	556, 1460, 2299, 3557
BstPAI	GACNNNNGTC	2 cut(s)	64, 3468
BstPI	GGTNACC	1 cut(s)	3700
BstSFI	CTRYAG	3 cut(s)	1152, 1296, 1446
BstSLI	GKGCMC	3 cut(s)	2081, 2235, 3586
BstUI	CGCG	2 cut(s)	407, 1482
BstV1I	GCAGC	9 cut(s)	893, 1432, 1439, 1460, 1483, 2842, 3067, 3095, 3632
BstV2I	GAAGAC	1 cut(s)	2936
BstX2I	RGATCY	2 cut(s)	45, 2648
BstXI	CCANNNNNNTGG	3 cut(s)	90, 1262, 2793
BstYI	RGATCY	2 cut(s)	45, 2648
Bsu36I	CCTNAGG	1 cut(s)	1122
BsuI	GTATCC	1 cut(s)	173
BtgI	CCRYGG	1 cut(s)	2370
BtgZI	GCGATG	2 cut(s)	67, 92
BtrI	CACGTC	1 cut(s)	2531
BtsCI	GGATG	8 cut(s)	26, 419, 1010, 2141, 2476, 2601, 2802, 2929
BtsI	GCAGTG	1 cut(s)	2364
BtsIMutI	CAGTG	8 cut(s)	927, 1083, 1944, 2139, 2364, 2500, 2823, 3495
BveI	ACCTGC	1 cut(s)	1303
Cac8I	GCNNGC	9 cut(s)	466, 554, 707, 1480, 1809, 2680, 2860, 2869, 3081
CaiI	CAGNNNCTG	2 cut(s)	2090, 3645
CciI	TCATGA	1 cut(s)	2773
Cfr13I	GGNCC	8 cut(s)	93, 327, 333, 2077, 2078, 2870, 3310, 3687
CseI	GACGC	1 cut(s)	3077
CsiI	ACCWGGT	3 cut(s)	1012, 1615, 1651
DraI	TTTAAA	2 cut(s)	1206, 1984
DraIII	CACNNNGTG	1 cut(s)	3579
DrdI	GACNNNNNNGTC	1 cut(s)	1949
DriI	GACNNNNNGTC	1 cut(s)	3693
DseDI	GACNNNNNNGTC	1 cut(s)	1949
EaeI	YGGCCR	4 cut(s)	669, 1864, 1935, 3745
Eam1104I	CTCTTC	4 cut(s)	103, 111, 2661, 3658
Eam1105I	GACNNNNNGTC	1 cut(s)	3693
EarI	CTCTTC	4 cut(s)	103, 111, 2661, 3658
Ecl136II	GAGCTC	1 cut(s)	3486
Eco130I	CCWWGG	3 cut(s)	1938, 3037, 3374
Eco147I	AGGCCT	1 cut(s)	1509
Eco24I	GRGCYC	4 cut(s)	522, 574, 2081, 3488
Eco32I	GATATC	1 cut(s)	1174
Eco47I	GGWCC	2 cut(s)	3310, 3687
Eco53kI	GAGCTC	1 cut(s)	3486
Eco57I	CTGAAG	6 cut(s)	290, 1613, 1763, 1785, 2067, 3711
Eco81I	CCTNAGG	1 cut(s)	1122
Eco88I	CYCGRG	4 cut(s)	528, 904, 1871, 3466
Eco91I	GGTNACC	1 cut(s)	3700
EcoICRI	GAGCTC	1 cut(s)	3486
EcoNI	CCTNNNNNAGG	1 cut(s)	2590
EcoO109I	RGGNCCY	1 cut(s)	2078
EcoO65I	GGTNACC	1 cut(s)	3700
EcoRI	GAATTC	2 cut(s)	821, 1579
EcoRII	CCWGG	9 cut(s)	165, 329, 1012, 1615, 1651, 2053, 2316, 2982, 3007
EcoRV	GATATC	1 cut(s)	1174
EcoT14I	CCWWGG	3 cut(s)	1938, 3037, 3374
EcoT22I	ATGCAT	1 cut(s)	1861
EcoT38I	GRGCYC	4 cut(s)	522, 574, 2081, 3488
ErhI	CCWWGG	3 cut(s)	1938, 3037, 3374
Esp3I	CGTCTC	1 cut(s)	3060
FalI	AAGNNNNNCTT	4 cut(s)	1494, 1526, 2616, 2648
FaqI	GGGAC	4 cut(s)	1221, 1531, 2361, 2965
FauI	CCCGC	2 cut(s)	1556, 2913
FauNDI	CATATG	2 cut(s)	753, 1861
FbaI	TGATCA	1 cut(s)	3636
FblI	GTMKAC	1 cut(s)	3777
FokI	GGATG	8 cut(s)	33, 406, 1017, 2148, 2483, 2608, 2809, 2936
FriOI	GRGCYC	4 cut(s)	522, 574, 2081, 3488
GsaI	CCCAGC	2 cut(s)	378, 2094
GsuI	CTGGAG	4 cut(s)	378, 2424, 2928, 3271
HapII	CCGG	6 cut(s)	668, 1002, 2717, 3019, 3111, 3500
HgaI	GACGC	1 cut(s)	3077
Hin1I	GRCGYC	1 cut(s)	87
HincII	GTYRAC	2 cut(s)	954, 1051
HindII	GTYRAC	2 cut(s)	954, 1051
HindIII	AAGCTT	3 cut(s)	707, 1212, 3591
HpaI	GTTAAC	1 cut(s)	954
HpaII	CCGG	6 cut(s)	668, 1002, 2717, 3019, 3111, 3500
HphI	GGTGA	8 cut(s)	477, 712, 1049, 1674, 1799, 2561, 2956, 3694
Hpy166II	GTNNAC	6 cut(s)	954, 1051, 2233, 2551, 3421, 3778
Hpy8I	GTNNAC	6 cut(s)	954, 1051, 2233, 2551, 3421, 3778
Hpy99I	CGWCG	5 cut(s)	20, 511, 605, 2485, 2532
HpyCH4IV	ACGT	5 cut(s)	87, 2392, 2419, 2530, 2704
HpyF10VI	GCNNNNNNNGC	7 cut(s)	404, 470, 1457, 2864, 2868, 3527, 3590
HpySE526I	ACGT	5 cut(s)	87, 2392, 2419, 2530, 2704
Hsp92I	GRCGYC	1 cut(s)	87
Kpn2I	TCCGGA	1 cut(s)	2716
KpnI	GGTACC	2 cut(s)	944, 2815
Ksp22I	TGATCA	1 cut(s)	3636
KspAI	GTTAAC	1 cut(s)	954
LmnI	GCTCC	6 cut(s)	369, 462, 470, 794, 2087, 3113
Lsp1109I	GCAGC	9 cut(s)	893, 1432, 1439, 1460, 1483, 2842, 3067, 3095, 3632
MabI	ACCWGGT	3 cut(s)	1012, 1615, 1651
MaeII	ACGT	5 cut(s)	87, 2392, 2419, 2530, 2704
MaeIII	GTNAC	9 cut(s)	685, 1271, 2035, 2128, 2143, 2508, 3102, 3440, 3700
MfeI	CAATTG	2 cut(s)	495, 991
MflI	RGATCY	2 cut(s)	45, 2648
MhlI	GDGCHC	6 cut(s)	522, 574, 2081, 2235, 3488, 3586
MlsI	TGGCCA	3 cut(s)	1866, 1937, 3747
MluNI	TGGCCA	3 cut(s)	1866, 1937, 3747
MlyI	GAGTC	2 cut(s)	1951, 3478
MmeI	TCCRAC	2 cut(s)	261, 489
Mox20I	TGGCCA	3 cut(s)	1866, 1937, 3747
Mph1103I	ATGCAT	1 cut(s)	1861
MroI	TCCGGA	1 cut(s)	2716
MroXI	GAANNNNTTC	1 cut(s)	2781
MscI	TGGCCA	3 cut(s)	1866, 1937, 3747
MslI	CAYNNNNRTG	5 cut(s)	557, 1136, 1317, 2558, 3707
Msp20I	TGGCCA	3 cut(s)	1866, 1937, 3747
MspA1I	CMGCKG	5 cut(s)	247, 268, 884, 3058, 3086
MspCI	CTTAAG	2 cut(s)	1511, 2959
MspI	CCGG	6 cut(s)	668, 1002, 2717, 3019, 3111, 3500
MunI	CAATTG	2 cut(s)	495, 991
Mva1269I	GAATGC	1 cut(s)	797
MvaI	CCWGG	9 cut(s)	167, 331, 1014, 1617, 1653, 2055, 2318, 2984, 3009
MvnI	CGCG	2 cut(s)	407, 1482
MwoI	GCNNNNNNNGC	7 cut(s)	404, 470, 1457, 2864, 2868, 3527, 3590
NciI	CCSGG	1 cut(s)	668
NdeI	CATATG	2 cut(s)	753, 1861
NlaIV	GGNNCC	8 cut(s)	302, 942, 1710, 2079, 2451, 2813, 3115, 3689
NmuCI	GTSAC	3 cut(s)	1271, 2143, 3700
NsiI	ATGCAT	1 cut(s)	1861
NspI	RCATGY	4 cut(s)	556, 1460, 2299, 3557
OliI	CACNNNNGTG	1 cut(s)	3707
PaeI	GCATGC	1 cut(s)	556
PaeR7I	CTCGAG	3 cut(s)	528, 904, 1871
PagI	TCATGA	1 cut(s)	2773
PceI	AGGCCT	1 cut(s)	1509
PcsI	WCGNNNNNNNCGW	1 cut(s)	2536
PctI	GAATGC	1 cut(s)	797
PdmI	GAANNNNTTC	1 cut(s)	2781
PfeI	GAWTC	8 cut(s)	354, 1128, 1178, 2199, 2257, 2366, 2397, 2770
PflMI	CCANNNNNTGG	1 cut(s)	432
Ple19I	CGATCG	1 cut(s)	1971
PleI	GAGTC	2 cut(s)	1951, 3477
PpsI	GAGTC	2 cut(s)	1951, 3477
PshAI	GACNNNNGTC	2 cut(s)	64, 3468
Psp124BI	GAGCTC	1 cut(s)	3488
Psp6I	CCWGG	9 cut(s)	165, 329, 1012, 1615, 1651, 2053, 2316, 2982, 3007
PspEI	GGTNACC	1 cut(s)	3700
PspFI	CCCAGC	2 cut(s)	374, 2090
PspGI	CCWGG	9 cut(s)	165, 329, 1012, 1615, 1651, 2053, 2316, 2982, 3007
PspN4I	GGNNCC	8 cut(s)	302, 942, 1710, 2079, 2451, 2813, 3115, 3689
PspOMI	GGGCCC	1 cut(s)	2077
PspPI	GGNCC	8 cut(s)	93, 327, 333, 2077, 2078, 2870, 3310, 3687
PspXI	VCTCGAGB	1 cut(s)	528
PstI	CTGCAG	2 cut(s)	1300, 1450
PstNI	CAGNNNCTG	2 cut(s)	2090, 3645
PsuI	RGATCY	2 cut(s)	45, 2648
PvuI	CGATCG	1 cut(s)	1971
RseI	CAYNNNNRTG	5 cut(s)	557, 1136, 1317, 2558, 3707
SacI	GAGCTC	1 cut(s)	3488
Sau96I	GGNCC	8 cut(s)	93, 327, 333, 2077, 2078, 2870, 3310, 3687
SbfI	CCTGCAGG	1 cut(s)	1300
ScaI	AGTACT	2 cut(s)	761, 1762
SchI	GAGTC	2 cut(s)	1951, 3478
SdaI	CCTGCAGG	1 cut(s)	1300
SduI	GDGCHC	6 cut(s)	522, 574, 2081, 2235, 3488, 3586
SexAI	ACCWGGT	3 cut(s)	1012, 1615, 1651
SfcI	CTRYAG	3 cut(s)	1152, 1296, 1446
Sfr274I	CTCGAG	3 cut(s)	528, 904, 1871
SinI	GGWCC	2 cut(s)	3310, 3687
SlaI	CTCGAG	3 cut(s)	528, 904, 1871
SmiMI	CAYNNNNRTG	5 cut(s)	557, 1136, 1317, 2558, 3707
SmlI	CTYRAG	7 cut(s)	528, 904, 1511, 1871, 2217, 2823, 2959
SmoI	CTYRAG	7 cut(s)	528, 904, 1511, 1871, 2217, 2823, 2959
SphI	GCATGC	1 cut(s)	556
Sse8387I	CCTGCAGG	1 cut(s)	1300
SseBI	AGGCCT	1 cut(s)	1509
SspI	AATATT	1 cut(s)	1798
SstI	GAGCTC	1 cut(s)	3488
StuI	AGGCCT	1 cut(s)	1509
StyI	CCWWGG	3 cut(s)	1938, 3037, 3374
TaiI	ACGT	5 cut(s)	90, 2395, 2422, 2533, 2707
TaqII	GACCGA	1 cut(s)	3012
TatI	WGTACW	5 cut(s)	759, 875, 1760, 3024, 3420
TauI	GCSGC	3 cut(s)	268, 407, 3061
TfiI	GAWTC	8 cut(s)	354, 1128, 1178, 2199, 2257, 2366, 2397, 2770
TscAI	CASTG	8 cut(s)	934, 1090, 1951, 2146, 2364, 2500, 2823, 3495
TseFI	GTSAC	3 cut(s)	1271, 2143, 3700
TseI	GCWGC	9 cut(s)	881, 1427, 1445, 1448, 1496, 2855, 3055, 3083, 3645
Tsp45I	GTSAC	3 cut(s)	1271, 2143, 3700
TspGWI	ACGGA	5 cut(s)	4, 1133, 2250, 2359, 2428
TspRI	CASTG	8 cut(s)	934, 1090, 1951, 2146, 2364, 2500, 2823, 3495
Van91I	CCANNNNNTGG	1 cut(s)	432
Vha464I	CTTAAG	2 cut(s)	1511, 2959
VneI	GTGCAC	1 cut(s)	2231
VpaK11BI	GGWCC	2 cut(s)	3310, 3687
XagI	CCTNNNNNAGG	1 cut(s)	2590
XapI	RAATTY	4 cut(s)	479, 821, 1579, 1845
XbaI	TCTAGA	1 cut(s)	2842
XceI	RCATGY	4 cut(s)	556, 1460, 2299, 3557
XcmI	CCANNNNNNNNNTGG	1 cut(s)	3304
XhoI	CTCGAG	3 cut(s)	528, 904, 1871
XmaJI	CCTAGG	1 cut(s)	3037
XmiI	GTMKAC	1 cut(s)	3777
XmnI	GAANNNNTTC	1 cut(s)	2781
ZraI	GACGTC	1 cut(s)	88
ZrmI	AGTACT	2 cut(s)	761, 1762
Zsp2I	ATGCAT	1 cut(s)	1861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.