Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000397.1

Orthogroup ID

OG0003497

Physical Location & Seq

Genomic Coordinates Reverse (-)

181108 .. 182371

Gene Structure 1264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000397.1_g000046.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgggtccttcaggagctgggaaaacaacatttctttctgcgttatcaggaaaagtaactggatgcactgtgacaggttcaattctaataaatggaaaagctgaaccaatgactgcctacaagagaatcattggctttgtgcctcaagatgatattgtgcatggaaacttgactgtggaggagaatctccgatttagtgcaaggtgcagactgtctgccaacatgccaaaacctgataaagttctggttgttgaaagagttattgaggctctgggactaggggcactgagagattccatggtaggtactgtggagaggtgtggaatctcaaggggattttggtttgggtacacttgtgactatcttgtggattttcttattgcagaggctgcatcatatagtattgctgttttcatgtacatgtcattttgggagacctgggagacccttgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

151

Amino Acids

16.52

Weight (kDa)

5.43

Isoelectric Point (pI)

27.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37010 AT2G37010
fragaria_vesca	FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150
malus_domestica	MD12G1115400.v1.1
prunus_persica	Prupe.6G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469991
rosa_laevigata	RLG00000024306
rosa_multiflora	Rmu_sc0000831.1_g000026 Rmu_sc0003342.1_g000004 Rmu_sc0007963.1_g000003 Rmu_sc0008347.1_g000006 Rmu_sc0020091.1_g000002 Rmu_ssc0000397.1_g000046
rosa_roxburghii	Rroxscaffold_6G00411310
rosa_rugosa	Rorug03G0105900 Rorug03G0105900
rosa_samantha	Rh1AG175800 Rh1CG163700 Rh2BG425000 Rh3AG155000 Rh3BG179100 Rh3CG169700 Rh3DG196100 Rh4CG158900 Rh5AG391600 Rh5CG032200 Rh7CG425900
rosa_wichuraiana	Rw3G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	307, 350, 419
AflIII	ACRYGT	1 cut(s)	420
AgsI	TTSAA	2 cut(s)	81, 254
AjnI	CCWGG	1 cut(s)	437
AluBI	AGCT	2 cut(s)	17, 101
AluI	AGCT	2 cut(s)	17, 101
Alw26I	GTCTC	2 cut(s)	428, 437
AlwNI	CAGNNNCTG	2 cut(s)	17, 389
ApeKI	GCWGC	1 cut(s)	389
AspS9I	GGNCC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	286
BaeI	ACNNNNGTAYC	2 cut(s)	340, 373
BbvI	GCAGC	1 cut(s)	376
BciT130I	CCWGG	1 cut(s)	439
BcoDI	GTCTC	2 cut(s)	428, 437
BfaI	CTAG	1 cut(s)	278
BisI	GCNGC	1 cut(s)	390
BlsI	GCNGC	1 cut(s)	391
Bme1390I	CCNGG	1 cut(s)	439
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	439
BmsI	GCATC	2 cut(s)	53, 401
BpuEI	CTTGAG	2 cut(s)	129, 313
BsaI	GGTCTC	2 cut(s)	428, 437
BsaJI	CCNNGG	2 cut(s)	297, 438
Bse1I	ACTGG	1 cut(s)	64
BseBI	CCWGG	1 cut(s)	439
BseDI	CCNNGG	2 cut(s)	297, 438
BseGI	GGATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	376
BseYI	CCCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	288
BsmAI	GTCTC	2 cut(s)	428, 437
BsmFI	GGGAC	1 cut(s)	288
Bso31I	GGTCTC	2 cut(s)	428, 437
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp1407I	TGTACA	1 cut(s)	417
Bsp19I	CCATGG	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	6
BspTNI	GGTCTC	2 cut(s)	428, 437
BsrGI	TGTACA	1 cut(s)	417
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	2 cut(s)	297, 438
BssT1I	CCWWGG	1 cut(s)	297
Bst2UI	CCWGG	1 cut(s)	439
Bst4CI	ACNGT	4 cut(s)	70, 175, 213, 310
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstAUI	TGTACA	1 cut(s)	417
BstDEI	CTNAG	1 cut(s)	287
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	68
BstMAI	GTCTC	2 cut(s)	428, 437
BstMWI	GCNNNNNNNGC	1 cut(s)	389
BstNI	CCWGG	1 cut(s)	439
BstNSI	RCATGY	2 cut(s)	226, 424
BstSCI	CCNGG	1 cut(s)	437
BstSLI	GKGCMC	1 cut(s)	286
BstV1I	GCAGC	1 cut(s)	376
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	66, 284
CaiI	CAGNNNCTG	2 cut(s)	17, 389
Cfr13I	GGNCC	1 cut(s)	5
Csp6I	GTAC	3 cut(s)	306, 349, 418
CviAII	CATG	5 cut(s)	161, 223, 298, 415, 421
CviJI	RGCY	5 cut(s)	17, 101, 135, 269, 389
CviKI_1	RGCY	5 cut(s)	17, 101, 135, 269, 389
CviQI	GTAC	3 cut(s)	306, 349, 418
DdeI	CTNAG	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	297
Eco31I	GGTCTC	2 cut(s)	428, 437
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
EcoRII	CCWGG	1 cut(s)	437
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	5 cut(s)	164, 226, 301, 418, 424
FaiI	YATR	7 cut(s)	162, 224, 299, 397, 399, 416, 422
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	5 cut(s)	160, 222, 297, 414, 420
Fnu4HI	GCNGC	1 cut(s)	390
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	390
FspBI	CTAG	1 cut(s)	278
GluI	GCNGC	1 cut(s)	390
GsaI	CCCAGC	1 cut(s)	21
Hin1II	CATG	5 cut(s)	164, 226, 301, 418, 424
HinfI	GANTC	4 cut(s)	126, 184, 293, 324
Hpy166II	GTNNAC	1 cut(s)	351
Hpy188I	TCNGA	1 cut(s)	191
Hpy188III	TCNNGA	3 cut(s)	12, 48, 146
Hpy8I	GTNNAC	1 cut(s)	351
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	4 cut(s)	70, 175, 213, 310
HpyCH4V	TGCA	6 cut(s)	66, 160, 200, 207, 383, 392
HpyF10VI	GCNNNNNNNGC	1 cut(s)	389
HpyF3I	CTNAG	1 cut(s)	287
Hsp92II	CATG	5 cut(s)	164, 226, 301, 418, 424
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	9 cut(s)	3, 33, 45, 60, 230, 246, 257, 424, 451
Lsp1109I	GCAGC	1 cut(s)	376
LweI	GCATC	2 cut(s)	53, 401
MaeI	CTAG	1 cut(s)	278
MaeIII	GTNAC	3 cut(s)	55, 70, 356
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	1 cut(s)	81
MnlI	CCTC	5 cut(s)	153, 172, 259, 309, 379
MslI	CAYNNNNRTG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	439
MvaI	CCWGG	1 cut(s)	439
MwoI	GCNNNNNNNGC	1 cut(s)	389
NcoI	CCATGG	1 cut(s)	297
NlaIII	CATG	5 cut(s)	164, 226, 301, 418, 424
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	70, 356
NspI	RCATGY	2 cut(s)	226, 424
PciI	ACATGT	1 cut(s)	420
PfeI	GAWTC	4 cut(s)	126, 184, 293, 324
PkrI	GCNGC	1 cut(s)	391
PpuMI	RGGWCCY	1 cut(s)	5
PscI	ACATGT	1 cut(s)	420
Psp5II	RGGWCCY	1 cut(s)	5
Psp6I	CCWGG	1 cut(s)	437
PspFI	CCCAGC	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	437
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PstNI	CAGNNNCTG	2 cut(s)	17, 389
RsaI	GTAC	3 cut(s)	307, 350, 419
RsaNI	GTAC	3 cut(s)	306, 349, 418
RseI	CAYNNNNRTG	1 cut(s)	419
SatI	GCNGC	1 cut(s)	390
Sau96I	GGNCC	1 cut(s)	5
ScrFI	CCNGG	1 cut(s)	439
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	8 cut(s)	19, 79, 103, 206, 235, 307, 320, 440
SfaNI	GCATC	2 cut(s)	53, 401
SinI	GGWCC	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	419
SmlI	CTYRAG	2 cut(s)	144, 328
SmoI	CTYRAG	2 cut(s)	144, 328
Sse9I	AATT	1 cut(s)	81
SspMI	CTAG	1 cut(s)	278
StyD4I	CCNGG	1 cut(s)	437
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	4 cut(s)	70, 175, 213, 310
TasI	AATT	1 cut(s)	81
TatI	WGTACW	1 cut(s)	417
TfiI	GAWTC	4 cut(s)	126, 184, 293, 324
TscAI	CASTG	2 cut(s)	73, 291
TseFI	GTSAC	2 cut(s)	70, 356
TseI	GCWGC	1 cut(s)	389
Tsp45I	GTSAC	2 cut(s)	70, 356
TspDTI	ATGAA	1 cut(s)	403
TspRI	CASTG	2 cut(s)	73, 291
VpaK11BI	GGWCC	1 cut(s)	5
XceI	RCATGY	2 cut(s)	226, 424
XspI	CTAG	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.