Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003497

Physical Location & Seq

Genomic Coordinates Reverse (-)

59938073 .. 59952136

Gene Structure 14064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG425000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGAGATATCCATGGGCAATCATGGGTCCTTCAGGAGCTGGGAAAGCAACATTTCTTTCTGCATTATCAGGAAAAGTAACTGGATGCACTGTGACAGGTTCAATTCTAATAAATGGAAAAGCTGAACCAATGACTGCCTACAAGAGAATCATTGGCTTTGTGCCTCAAGACGATATTGTGCATGGAAACTTGACTGTGGAGGAGAATCTCCGATTTAGTGCAAGGTGCAGACTGTCTGCCAACATGCCAAAACCTGATAAAGTCCTGGTTGTTGAAAGAGTTATTGAGGCTCTGGGACTAGGGGCACTGAGAGATTCCGTGGTAGGTACTGTGGAGAGGTGTGGAATCTCTAGGGGTAAAGGACTGGGCAAGCAGTACATAAATCAAACTAAGTACAGTAGCTTGGATTTTGGTTTGGGTACACTTGTGACTATCTTGTGGATTTTCTTATTGCAGAGGCTGCATCATATAGTATTGCTGTTTTCATGTACATGTCATTTTGGGAGACCCTTGATTAGTTTTCCTCAGGTTCTGATTTTGGCAAGGACAAATCATTGGAGTTCCTGCAGCTCTGGATCTATTGAAGGCCTGGAGGAGCACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

200

Amino Acids

21.81

Weight (kDa)

9.28

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	5 - 119	1.4e-11	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37010 AT2G37010
fragaria_vesca	FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150
malus_domestica	MD12G1115400.v1.1
prunus_persica	Prupe.6G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469991
rosa_laevigata	RLG00000024306
rosa_multiflora	Rmu_sc0000831.1_g000026 Rmu_sc0003342.1_g000004 Rmu_sc0007963.1_g000003 Rmu_sc0008347.1_g000006 Rmu_sc0020091.1_g000002 Rmu_ssc0000397.1_g000046
rosa_roxburghii	Rroxscaffold_6G00411310
rosa_rugosa	Rorug03G0105900 Rorug03G0105900
rosa_samantha	Rh1AG175800 Rh1CG163700 Rh2BG425000 Rh3AG155000 Rh3BG179100 Rh3CG169700 Rh3DG196100 Rh4CG158900 Rh5AG391600 Rh5CG032200 Rh7CG425900
rosa_wichuraiana	Rw3G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	583
AcuI	CTGAAG	1 cut(s)	15
AfaI	GTAC	5 cut(s)	328, 377, 395, 421, 490
AflIII	ACRYGT	1 cut(s)	491
AgsI	TTSAA	3 cut(s)	102, 275, 584
AjnI	CCWGG	2 cut(s)	264, 588
AluBI	AGCT	4 cut(s)	38, 122, 402, 570
AluI	AGCT	4 cut(s)	38, 122, 402, 570
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	1 cut(s)	499
AlwI	GGATC	1 cut(s)	583
AlwNI	CAGNNNCTG	3 cut(s)	38, 460, 532
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	2 cut(s)	460, 567
AspS9I	GGNCC	1 cut(s)	26
AvaII	GGWCC	1 cut(s)	26
AxyI	CCTNAGG	1 cut(s)	525
BaeGI	GKGCMC	1 cut(s)	307
BaeI	ACNNNNGTAYC	2 cut(s)	411, 444
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	2 cut(s)	447, 579
BciT130I	CCWGG	2 cut(s)	266, 590
BcoDI	GTCTC	1 cut(s)	499
BfaI	CTAG	3 cut(s)	299, 351, 601
BfmI	CTRYAG	1 cut(s)	565
BisI	GCNGC	2 cut(s)	461, 568
BlsI	GCNGC	2 cut(s)	462, 569
Bme1390I	CCNGG	2 cut(s)	266, 590
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	2 cut(s)	266, 590
BmrI	ACTGGG	1 cut(s)	374
BmsI	GCATC	2 cut(s)	74, 472
BmuI	ACTGGG	1 cut(s)	374
BpuEI	CTTGAG	1 cut(s)	150
BsaI	GGTCTC	1 cut(s)	499
BsaJI	CCNNGG	2 cut(s)	11, 318
Bse1I	ACTGG	2 cut(s)	85, 369
Bse21I	CCTNAGG	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	266, 590
BseDI	CCNNGG	2 cut(s)	11, 318
BseGI	GGATG	1 cut(s)	89
BseMII	CTCAG	2 cut(s)	299, 539
BseNI	ACTGG	2 cut(s)	85, 369
BseRI	GAGGAG	1 cut(s)	215
BseSI	GKGCMC	1 cut(s)	307
BseXI	GCAGC	2 cut(s)	447, 579
BseYI	CCCAGC	1 cut(s)	38
BsgI	GTGCAG	1 cut(s)	247
BshFI	GGCC	1 cut(s)	588
BsiHKAI	GWGCWC	1 cut(s)	600
BslFI	GGGAC	1 cut(s)	309
BsmAI	GTCTC	1 cut(s)	499
BsmFI	GGGAC	1 cut(s)	309
BsnI	GGCC	1 cut(s)	588
Bso31I	GGTCTC	1 cut(s)	499
Bsp1286I	GDGCHC	2 cut(s)	307, 600
Bsp1407I	TGTACA	1 cut(s)	488
Bsp143I	GATC	1 cut(s)	575
Bsp19I	CCATGG	1 cut(s)	11
BspANI	GGCC	1 cut(s)	588
BspCNI	CTCAG	2 cut(s)	300, 538
BspLI	GGNNCC	1 cut(s)	27
BspMAI	CTGCAG	1 cut(s)	569
BspPI	GGATC	1 cut(s)	583
BspTNI	GGTCTC	1 cut(s)	499
BsrGI	TGTACA	1 cut(s)	488
BsrI	ACTGG	2 cut(s)	85, 369
BssECI	CCNNGG	2 cut(s)	11, 318
BssMI	GATC	1 cut(s)	575
BssT1I	CCWWGG	1 cut(s)	11
Bst2UI	CCWGG	2 cut(s)	266, 590
Bst4CI	ACNGT	5 cut(s)	91, 196, 234, 331, 398
BstAPI	GCANNNNNTGC	1 cut(s)	460
BstAUI	TGTACA	1 cut(s)	488
BstC8I	GCNNGC	1 cut(s)	371
BstDEI	CTNAG	3 cut(s)	308, 390, 525
BstDSI	CCRYGG	2 cut(s)	11, 318
BstF5I	GGATG	1 cut(s)	89
BstKTI	GATC	1 cut(s)	578
BstMAI	GTCTC	1 cut(s)	499
BstMBI	GATC	1 cut(s)	575
BstMWI	GCNNNNNNNGC	2 cut(s)	44, 460
BstNI	CCWGG	2 cut(s)	266, 590
BstNSI	RCATGY	2 cut(s)	247, 495
BstSCI	CCNGG	2 cut(s)	264, 588
BstSFI	CTRYAG	1 cut(s)	565
BstSLI	GKGCMC	1 cut(s)	307
BstV1I	GCAGC	2 cut(s)	447, 579
BstX2I	RGATCY	1 cut(s)	575
BstYI	RGATCY	1 cut(s)	575
Bsu36I	CCTNAGG	1 cut(s)	525
BsuRI	GGCC	1 cut(s)	588
BtgI	CCRYGG	2 cut(s)	11, 318
BtsCI	GGATG	1 cut(s)	89
BtsIMutI	CAGTG	2 cut(s)	87, 305
Cac8I	GCNNGC	1 cut(s)	371
CaiI	CAGNNNCTG	3 cut(s)	38, 460, 532
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	5 cut(s)	327, 376, 394, 420, 489
CviAII	CATG	6 cut(s)	12, 22, 182, 244, 486, 492
CviJI	RGCY	8 cut(s)	38, 122, 156, 290, 402, 460, 570, 588
CviKI_1	RGCY	8 cut(s)	38, 122, 156, 290, 402, 460, 570, 588
CviQI	GTAC	5 cut(s)	327, 376, 394, 420, 489
DdeI	CTNAG	3 cut(s)	308, 390, 525
DpnI	GATC	1 cut(s)	577
DpnII	GATC	1 cut(s)	575
Eco130I	CCWWGG	1 cut(s)	11
Eco147I	AGGCCT	1 cut(s)	588
Eco31I	GGTCTC	1 cut(s)	499
Eco32I	GATATC	1 cut(s)	8
Eco47I	GGWCC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	15
Eco81I	CCTNAGG	1 cut(s)	525
EcoO109I	RGGNCCY	1 cut(s)	26
EcoRII	CCWGG	2 cut(s)	264, 588
EcoRV	GATATC	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	11
ErhI	CCWWGG	1 cut(s)	11
FaeI	CATG	6 cut(s)	15, 25, 185, 247, 489, 495
FaiI	YATR	9 cut(s)	13, 23, 183, 245, 380, 468, 470, 487, 493
FaqI	GGGAC	1 cut(s)	309
FatI	CATG	6 cut(s)	11, 21, 181, 243, 485, 491
Fnu4HI	GCNGC	2 cut(s)	461, 568
FokI	GGATG	1 cut(s)	96
Fsp4HI	GCNGC	2 cut(s)	461, 568
FspBI	CTAG	3 cut(s)	299, 351, 601
GluI	GCNGC	2 cut(s)	461, 568
GsaI	CCCAGC	1 cut(s)	42
HaeIII	GGCC	1 cut(s)	588
Hin1II	CATG	6 cut(s)	15, 25, 185, 247, 489, 495
HinfI	GANTC	4 cut(s)	147, 205, 314, 345
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	2 cut(s)	212, 534
Hpy188III	TCNNGA	4 cut(s)	33, 69, 167, 573
Hpy8I	GTNNAC	1 cut(s)	422
HpyAV	CCTTC	2 cut(s)	39, 578
HpyCH4III	ACNGT	5 cut(s)	91, 196, 234, 331, 398
HpyCH4V	TGCA	8 cut(s)	62, 87, 181, 221, 228, 454, 463, 567
HpyF10VI	GCNNNNNNNGC	2 cut(s)	44, 460
HpyF3I	CTNAG	3 cut(s)	308, 390, 525
Hsp92II	CATG	6 cut(s)	15, 25, 185, 247, 489, 495
Kzo9I	GATC	1 cut(s)	575
LmnI	GCTCC	2 cut(s)	35, 595
Lsp1109I	GCAGC	2 cut(s)	447, 579
LweI	GCATC	2 cut(s)	74, 472
MaeI	CTAG	3 cut(s)	299, 351, 601
MaeIII	GTNAC	3 cut(s)	76, 91, 427
MalI	GATC	1 cut(s)	577
MboI	GATC	1 cut(s)	575
MflI	RGATCY	1 cut(s)	575
MhlI	GDGCHC	2 cut(s)	307, 600
MluCI	AATT	1 cut(s)	102
MnlI	CCTC	7 cut(s)	174, 193, 280, 330, 450, 534, 586
MslI	CAYNNNNRTG	1 cut(s)	490
MspR9I	CCNGG	2 cut(s)	266, 590
MvaI	CCWGG	2 cut(s)	266, 590
MwoI	GCNNNNNNNGC	2 cut(s)	44, 460
NcoI	CCATGG	1 cut(s)	11
NdeII	GATC	1 cut(s)	575
NlaIII	CATG	6 cut(s)	15, 25, 185, 247, 489, 495
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	2 cut(s)	91, 427
NspI	RCATGY	2 cut(s)	247, 495
PceI	AGGCCT	1 cut(s)	588
PciI	ACATGT	1 cut(s)	491
PfeI	GAWTC	4 cut(s)	147, 205, 314, 345
PkrI	GCNGC	2 cut(s)	462, 569
PpuMI	RGGWCCY	1 cut(s)	26
PscI	ACATGT	1 cut(s)	491
Psp5II	RGGWCCY	1 cut(s)	26
Psp6I	CCWGG	2 cut(s)	264, 588
PspFI	CCCAGC	1 cut(s)	38
PspGI	CCWGG	2 cut(s)	264, 588
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	26
PspPPI	RGGWCCY	1 cut(s)	26
PstI	CTGCAG	1 cut(s)	569
PstNI	CAGNNNCTG	3 cut(s)	38, 460, 532
PsuI	RGATCY	1 cut(s)	575
RsaI	GTAC	5 cut(s)	328, 377, 395, 421, 490
RsaNI	GTAC	5 cut(s)	327, 376, 394, 420, 489
RseI	CAYNNNNRTG	1 cut(s)	490
SatI	GCNGC	2 cut(s)	461, 568
Sau3AI	GATC	1 cut(s)	575
Sau96I	GGNCC	1 cut(s)	26
ScrFI	CCNGG	2 cut(s)	266, 590
SduI	GDGCHC	2 cut(s)	307, 600
SfaNI	GCATC	2 cut(s)	74, 472
SfcI	CTRYAG	1 cut(s)	565
SinI	GGWCC	1 cut(s)	26
SmiMI	CAYNNNNRTG	1 cut(s)	490
SmlI	CTYRAG	1 cut(s)	165
SmoI	CTYRAG	1 cut(s)	165
Sse9I	AATT	1 cut(s)	102
SseBI	AGGCCT	1 cut(s)	588
SspMI	CTAG	3 cut(s)	299, 351, 601
StuI	AGGCCT	1 cut(s)	588
StyD4I	CCNGG	2 cut(s)	264, 588
StyI	CCWWGG	1 cut(s)	11
TaaI	ACNGT	5 cut(s)	91, 196, 234, 331, 398
TasI	AATT	1 cut(s)	102
TatI	WGTACW	3 cut(s)	375, 393, 488
TfiI	GAWTC	4 cut(s)	147, 205, 314, 345
TscAI	CASTG	2 cut(s)	94, 312
TseFI	GTSAC	2 cut(s)	91, 427
TseI	GCWGC	2 cut(s)	460, 567
Tsp45I	GTSAC	2 cut(s)	91, 427
TspDTI	ATGAA	1 cut(s)	474
TspGWI	ACGGA	1 cut(s)	307
TspRI	CASTG	2 cut(s)	94, 312
VpaK11BI	GGWCC	1 cut(s)	26
XceI	RCATGY	2 cut(s)	247, 495
XspI	CTAG	3 cut(s)	299, 351, 601

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.