Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003497

Physical Location & Seq

Genomic Coordinates Reverse (-)

33599664 .. 33607123

Gene Structure 7460 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG175800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGGTCCTTCAGGAGCTGGGAAAACAACATTTCTTTCTGCGTTATCAGGAAAAGTAACTGGATGCACTGTGACAGGTTCAATTCTAATAAATGGAAAAGCTGAACCAATGACTGCCTACAAGAGAATCATTGGCTTTGTGCCTCAAGATGATATTGTGCATGGAAACTTGACTGTGGAGGAGAATCTCCGATTTAGTGCAAGGTGCAGACTGTCTGCCAACATGCCAAAACCTGATAAAGTTCTGGTTGTTGAAAGAGTTATTGAGGCTCTGGGACTAGGGGCACTGAGAGATTCCATGGTAGGTACTGTGGAGAGGTGTGGAATCTCTAGGGGTAAAGGACTGGGCAAGCAGTACATAAATCAAACTAAGTACAGTAGCTTGAAAGTTAATGGCAGAGCAACACCAGATCATACCAGCTCAAGAATACAACACAAGTCACATACACATTCATCATATGAGCTGGAGGAGAAAGATGAATCAGATGGTGATTCAGCCCTAACAAGAGCAGAACAAGTCCAAACTCAGAAGAGGATAAAACCTGAAATTGAAGACAGAACTTGTCCAAACAGAGCCAAGGCATTTCAGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

197

Amino Acids

21.47

Weight (kDa)

9.32

Isoelectric Point (pI)

31.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	1 - 111	1.2e-10	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37010 AT2G37010
fragaria_vesca	FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150
malus_domestica	MD12G1115400.v1.1
prunus_persica	Prupe.6G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469991
rosa_laevigata	RLG00000024306
rosa_multiflora	Rmu_sc0000831.1_g000026 Rmu_sc0003342.1_g000004 Rmu_sc0007963.1_g000003 Rmu_sc0008347.1_g000006 Rmu_sc0020091.1_g000002 Rmu_ssc0000397.1_g000046
rosa_roxburghii	Rroxscaffold_6G00411310
rosa_rugosa	Rorug03G0105900 Rorug03G0105900
rosa_samantha	Rh1AG175800 Rh1CG163700 Rh2BG425000 Rh3AG155000 Rh3BG179100 Rh3CG169700 Rh3DG196100 Rh4CG158900 Rh5AG391600 Rh5CG032200 Rh7CG425900
rosa_wichuraiana	Rw3G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	3 cut(s)	307, 356, 374
AgsI	TTSAA	4 cut(s)	81, 254, 385, 551
AluBI	AGCT	5 cut(s)	17, 101, 381, 420, 463
AluI	AGCT	5 cut(s)	17, 101, 381, 420, 463
AlwNI	CAGNNNCTG	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	5
AsuHPI	GGTGA	1 cut(s)	500
AvaII	GGWCC	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	286
BbsI	GAAGAC	1 cut(s)	558
BccI	CCATC	1 cut(s)	479
BfaI	CTAG	2 cut(s)	278, 330
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	353
BmsI	GCATC	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	353
BpiI	GAAGAC	1 cut(s)	558
BpmI	CTGGAG	1 cut(s)	485
BpuEI	CTTGAG	2 cut(s)	129, 406
BsaJI	CCNNGG	2 cut(s)	297, 576
Bse1I	ACTGG	2 cut(s)	64, 348
BseDI	CCNNGG	2 cut(s)	297, 576
BseGI	GGATG	1 cut(s)	68
BseMII	CTCAG	2 cut(s)	278, 539
BseNI	ACTGG	2 cut(s)	64, 348
BseRI	GAGGAG	2 cut(s)	194, 482
BseSI	GKGCMC	1 cut(s)	286
BseYI	CCCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	409
Bsp19I	CCATGG	1 cut(s)	297
BspCNI	CTCAG	2 cut(s)	279, 538
BspLI	GGNNCC	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	64, 348
BssECI	CCNNGG	2 cut(s)	297, 576
BssMI	GATC	1 cut(s)	409
BssT1I	CCWWGG	2 cut(s)	297, 576
Bst4CI	ACNGT	5 cut(s)	70, 175, 213, 310, 377
Bst6I	CTCTTC	1 cut(s)	524
BstC8I	GCNNGC	1 cut(s)	350
BstDEI	CTNAG	3 cut(s)	287, 369, 525
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	1 cut(s)	412
BstMBI	GATC	1 cut(s)	409
BstNSI	RCATGY	1 cut(s)	226
BstSLI	GKGCMC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	558
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	66, 284
Cac8I	GCNNGC	1 cut(s)	350
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	5
Csp6I	GTAC	3 cut(s)	306, 355, 373
CviAII	CATG	3 cut(s)	161, 223, 298
CviQI	GTAC	3 cut(s)	306, 355, 373
DdeI	CTNAG	3 cut(s)	287, 369, 525
DpnI	GATC	1 cut(s)	411
DpnII	GATC	1 cut(s)	409
Eam1104I	CTCTTC	1 cut(s)	524
EarI	CTCTTC	1 cut(s)	524
Eco130I	CCWWGG	2 cut(s)	297, 576
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT14I	CCWWGG	2 cut(s)	297, 576
ErhI	CCWWGG	2 cut(s)	297, 576
FaeI	CATG	3 cut(s)	164, 226, 301
FaiI	YATR	8 cut(s)	162, 224, 299, 359, 414, 444, 457, 459
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	3 cut(s)	160, 222, 297
FauNDI	CATATG	1 cut(s)	457
FokI	GGATG	1 cut(s)	75
FspBI	CTAG	2 cut(s)	278, 330
GsaI	CCCAGC	1 cut(s)	21
GsuI	CTGGAG	1 cut(s)	485
Hin1II	CATG	3 cut(s)	164, 226, 301
HinfI	GANTC	6 cut(s)	126, 184, 293, 324, 479, 491
HphI	GGTGA	1 cut(s)	500
Hpy188I	TCNGA	3 cut(s)	191, 484, 528
Hpy188III	TCNNGA	4 cut(s)	12, 48, 146, 423
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	5 cut(s)	70, 175, 213, 310, 377
HpyCH4V	TGCA	4 cut(s)	66, 160, 200, 207
HpyF3I	CTNAG	3 cut(s)	287, 369, 525
Hsp92II	CATG	3 cut(s)	164, 226, 301
Kzo9I	GATC	1 cut(s)	409
LmnI	GCTCC	1 cut(s)	14
LweI	GCATC	1 cut(s)	53
MaeI	CTAG	2 cut(s)	278, 330
MaeIII	GTNAC	3 cut(s)	55, 70, 438
MalI	GATC	1 cut(s)	411
MboI	GATC	1 cut(s)	409
MboII	GAAGA	2 cut(s)	541, 563
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	2 cut(s)	81, 546
MnlI	CCTC	6 cut(s)	153, 172, 259, 309, 460, 525
MseI	TTAA	2 cut(s)	390, 592
NcoI	CCATGG	1 cut(s)	297
NdeI	CATATG	1 cut(s)	457
NdeII	GATC	1 cut(s)	409
NlaIII	CATG	3 cut(s)	164, 226, 301
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	2 cut(s)	70, 438
NspI	RCATGY	1 cut(s)	226
PfeI	GAWTC	6 cut(s)	126, 184, 293, 324, 479, 491
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PstNI	CAGNNNCTG	1 cut(s)	17
RsaI	GTAC	3 cut(s)	307, 356, 374
RsaNI	GTAC	3 cut(s)	306, 355, 373
SaqAI	TTAA	2 cut(s)	390, 592
Sau3AI	GATC	1 cut(s)	409
Sau96I	GGNCC	1 cut(s)	5
SduI	GDGCHC	1 cut(s)	286
SfaNI	GCATC	1 cut(s)	53
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	2 cut(s)	144, 421
SmoI	CTYRAG	2 cut(s)	144, 421
Sse9I	AATT	2 cut(s)	81, 546
SspMI	CTAG	2 cut(s)	278, 330
StyI	CCWWGG	2 cut(s)	297, 576
TaaI	ACNGT	5 cut(s)	70, 175, 213, 310, 377
TasI	AATT	2 cut(s)	81, 546
TatI	WGTACW	2 cut(s)	354, 372
TfiI	GAWTC	6 cut(s)	126, 184, 293, 324, 479, 491
Tru1I	TTAA	2 cut(s)	390, 592
Tru9I	TTAA	2 cut(s)	390, 592
TscAI	CASTG	2 cut(s)	73, 291
TseFI	GTSAC	2 cut(s)	70, 438
Tsp45I	GTSAC	2 cut(s)	70, 438
TspDTI	ATGAA	2 cut(s)	441, 492
TspRI	CASTG	2 cut(s)	73, 291
VpaK11BI	GGWCC	1 cut(s)	5
XceI	RCATGY	1 cut(s)	226
XspI	CTAG	2 cut(s)	278, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.