Rmu_sc0003342.1_g000004

white-brown complex homolog protein 30

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003342.1
Physical Location & Seq
Reverse (-)
14258 .. 15158
901 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003342.1_g000004.1.cds

Sequence Viewer

Length: 390 bp
atgggtccttcaggagctgggaaagcaacatttctttctgcattatcaggaaaagtaactggatgcactgtgacaggttcaattctaataaatggaaaagctgaaccaatgactgcctacaagagaatcattggctttgtgcctcaagacgatattgtgcatggaaacttgactgtggaggagaatctccgatttagtgcaaggtgcagactgtctgccaacatgccaaaacctaataaagtcctggttgttgaaagagttattgaggctctgggactaggggcactgagagattccgtggtaggtactgtggagaggtgtggaatctctaggggtaaaggactgggcaagcagtacataaatcaaactaagtacagtagcttggtatag

Protein Analysis

129

Amino Acids

13.65

Weight (kDa)

9.76

Isoelectric Point (pI)

27.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 307, 356, 374
AgsI TTSAA 2 cut(s) 81, 254
AjnI CCWGG 1 cut(s) 243
AluBI AGCT 3 cut(s) 17, 101, 381
AluI AGCT 3 cut(s) 17, 101, 381
AlwNI CAGNNNCTG 1 cut(s) 17
AspS9I GGNCC 1 cut(s) 5
AvaII GGWCC 1 cut(s) 5
BaeGI GKGCMC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 245
BfaI CTAG 2 cut(s) 278, 330
Bme1390I CCNGG 1 cut(s) 245
Bme18I GGWCC 1 cut(s) 5
BmgT120I GGNCC 1 cut(s) 5
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 1 cut(s) 245
BmrI ACTGGG 1 cut(s) 353
BmsI GCATC 1 cut(s) 53
BmuI ACTGGG 1 cut(s) 353
BpuEI CTTGAG 1 cut(s) 129
BsaJI CCNNGG 1 cut(s) 297
Bse1I ACTGG 2 cut(s) 64, 348
BseBI CCWGG 1 cut(s) 245
BseDI CCNNGG 1 cut(s) 297
BseGI GGATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 278
BseNI ACTGG 2 cut(s) 64, 348
BseRI GAGGAG 1 cut(s) 194
BseSI GKGCMC 1 cut(s) 286
BseYI CCCAGC 1 cut(s) 17
BsgI GTGCAG 1 cut(s) 226
BslFI GGGAC 1 cut(s) 288
BsmFI GGGAC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 286
BspCNI CTCAG 1 cut(s) 279
BspLI GGNNCC 1 cut(s) 6
BsrI ACTGG 2 cut(s) 64, 348
BssECI CCNNGG 1 cut(s) 297
Bst2UI CCWGG 1 cut(s) 245
Bst4CI ACNGT 5 cut(s) 70, 175, 213, 310, 377
BstC8I GCNNGC 1 cut(s) 350
BstDEI CTNAG 2 cut(s) 287, 369
BstDSI CCRYGG 1 cut(s) 297
BstF5I GGATG 1 cut(s) 68
BstMWI GCNNNNNNNGC 1 cut(s) 23
BstNI CCWGG 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 226
BstSCI CCNGG 1 cut(s) 243
BstSLI GKGCMC 1 cut(s) 286
BtgI CCRYGG 1 cut(s) 297
BtsCI GGATG 1 cut(s) 68
BtsIMutI CAGTG 2 cut(s) 66, 284
Cac8I GCNNGC 1 cut(s) 350
CaiI CAGNNNCTG 1 cut(s) 17
Cfr13I GGNCC 1 cut(s) 5
Csp6I GTAC 3 cut(s) 306, 355, 373
CviAII CATG 2 cut(s) 161, 223
CviJI RGCY 5 cut(s) 17, 101, 135, 269, 381
CviKI_1 RGCY 5 cut(s) 17, 101, 135, 269, 381
CviQI GTAC 3 cut(s) 306, 355, 373
DdeI CTNAG 2 cut(s) 287, 369
Eco47I GGWCC 1 cut(s) 5
EcoO109I RGGNCCY 1 cut(s) 5
EcoRII CCWGG 1 cut(s) 243
FaeI CATG 2 cut(s) 164, 226
FaiI YATR 4 cut(s) 162, 224, 359, 388
FaqI GGGAC 1 cut(s) 288
FatI CATG 2 cut(s) 160, 222
FokI GGATG 1 cut(s) 75
FspBI CTAG 2 cut(s) 278, 330
GsaI CCCAGC 1 cut(s) 21
Hin1II CATG 2 cut(s) 164, 226
HinfI GANTC 4 cut(s) 126, 184, 293, 324
Hpy188I TCNGA 1 cut(s) 191
Hpy188III TCNNGA 3 cut(s) 12, 48, 146
HpyAV CCTTC 1 cut(s) 18
HpyCH4III ACNGT 5 cut(s) 70, 175, 213, 310, 377
HpyCH4V TGCA 5 cut(s) 41, 66, 160, 200, 207
HpyF10VI GCNNNNNNNGC 1 cut(s) 23
HpyF3I CTNAG 2 cut(s) 287, 369
Hsp92II CATG 2 cut(s) 164, 226
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 8 cut(s) 3, 33, 45, 60, 230, 257, 257, 329
LweI GCATC 1 cut(s) 53
MaeI CTAG 2 cut(s) 278, 330
MaeIII GTNAC 2 cut(s) 55, 70
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 1 cut(s) 81
MnlI CCTC 4 cut(s) 153, 172, 259, 309
MspR9I CCNGG 1 cut(s) 245
MvaI CCWGG 1 cut(s) 245
MwoI GCNNNNNNNGC 1 cut(s) 23
NlaIII CATG 2 cut(s) 164, 226
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 70
NspI RCATGY 1 cut(s) 226
PfeI GAWTC 4 cut(s) 126, 184, 293, 324
PpuMI RGGWCCY 1 cut(s) 5
Psp5II RGGWCCY 1 cut(s) 5
Psp6I CCWGG 1 cut(s) 243
PspFI CCCAGC 1 cut(s) 17
PspGI CCWGG 1 cut(s) 243
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 5
PspPPI RGGWCCY 1 cut(s) 5
PstNI CAGNNNCTG 1 cut(s) 17
RsaI GTAC 3 cut(s) 307, 356, 374
RsaNI GTAC 3 cut(s) 306, 355, 373
Sau96I GGNCC 1 cut(s) 5
ScrFI CCNGG 1 cut(s) 245
SduI GDGCHC 1 cut(s) 286
SetI ASST 8 cut(s) 19, 79, 103, 206, 235, 307, 320, 383
SfaNI GCATC 1 cut(s) 53
SinI GGWCC 1 cut(s) 5
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 1 cut(s) 81
SspMI CTAG 2 cut(s) 278, 330
StyD4I CCNGG 1 cut(s) 243
TaaI ACNGT 5 cut(s) 70, 175, 213, 310, 377
TasI AATT 1 cut(s) 81
TatI WGTACW 2 cut(s) 354, 372
TfiI GAWTC 4 cut(s) 126, 184, 293, 324
TscAI CASTG 2 cut(s) 73, 291
TseFI GTSAC 1 cut(s) 70
Tsp45I GTSAC 1 cut(s) 70
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 2 cut(s) 73, 291
VpaK11BI GGWCC 1 cut(s) 5
XceI RCATGY 1 cut(s) 226
XspI CTAG 2 cut(s) 278, 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.