Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0003497

Physical Location & Seq

Genomic Coordinates Reverse (-)

55381907 .. 55387330

Gene Structure 5424 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG425900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGGGTCCTTCAGGAGCTGGGAAAACAACATTTATTTCTGCATTATCAGGAAAAGTAACTGGATGCACTGTGACAGGTTCAATTCTAATAAATGGAAAAGCTGAACCAATGACTGCCTACAAGAGAATCATTGGCTTTGTGCCTCAAGATGATATTGTGCATGGAAACTTGACTGTGGAGGAGAATCCCCGATTTAGTGCAAGGTGCAGACTGTCTGCCAACATGCCAAAACCTGATAAAGTTCTGGTTGTTGAAAGAGTTATTGAGGCTCTGGGACTAGGGGCACTGAGAGATCCCATGGATTTTGACGTCGCAACTAGTTGCCGCAAACTCCACGATCTCCTTATCACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

117

Amino Acids

12.51

Weight (kDa)

8.54

Isoelectric Point (pI)

24.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	1 - 96	4.9e-10	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37010 AT2G37010
fragaria_vesca	FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150
malus_domestica	MD12G1115400.v1.1
prunus_persica	Prupe.6G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469991
rosa_laevigata	RLG00000024306
rosa_multiflora	Rmu_sc0000831.1_g000026 Rmu_sc0003342.1_g000004 Rmu_sc0007963.1_g000003 Rmu_sc0008347.1_g000006 Rmu_sc0020091.1_g000002 Rmu_ssc0000397.1_g000046
rosa_roxburghii	Rroxscaffold_6G00411310
rosa_rugosa	Rorug03G0105900 Rorug03G0105900
rosa_samantha	Rh1AG175800 Rh1CG163700 Rh2BG425000 Rh3AG155000 Rh3BG179100 Rh3CG169700 Rh3DG196100 Rh4CG158900 Rh5AG391600 Rh5CG032200 Rh7CG425900
rosa_wichuraiana	Rw3G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	312
AciI	CCGC	1 cut(s)	325
AclWI	GGATC	1 cut(s)	287
AcyI	GRCGYC	1 cut(s)	309
AgsI	TTSAA	2 cut(s)	81, 254
AhlI	ACTAGT	1 cut(s)	317
AluBI	AGCT	2 cut(s)	17, 101
AluI	AGCT	2 cut(s)	17, 101
AlwI	GGATC	1 cut(s)	287
AlwNI	CAGNNNCTG	1 cut(s)	17
AspS9I	GGNCC	1 cut(s)	5
AvaII	GGWCC	1 cut(s)	5
BaeGI	GKGCMC	1 cut(s)	286
BcuI	ACTAGT	1 cut(s)	317
BfaI	CTAG	2 cut(s)	278, 318
BisI	GCNGC	1 cut(s)	325
BlsI	GCNGC	1 cut(s)	326
Bme18I	GGWCC	1 cut(s)	5
BmgT120I	GGNCC	1 cut(s)	5
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	53
BpuEI	CTTGAG	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	309
BsaJI	CCNNGG	1 cut(s)	297
Bse1I	ACTGG	1 cut(s)	64
BseDI	CCNNGG	1 cut(s)	297
BseGI	GGATG	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	278
BseNI	ACTGG	1 cut(s)	64
BseRI	GAGGAG	1 cut(s)	194
BseSI	GKGCMC	1 cut(s)	286
BseYI	CCCAGC	1 cut(s)	17
BsgI	GTGCAG	1 cut(s)	226
BslFI	GGGAC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	2 cut(s)	292, 337
Bsp19I	CCATGG	1 cut(s)	297
BspACI	CCGC	1 cut(s)	325
BspCNI	CTCAG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	64
BssECI	CCNNGG	1 cut(s)	297
BssMI	GATC	2 cut(s)	292, 337
BssNI	GRCGYC	1 cut(s)	309
BssT1I	CCWWGG	1 cut(s)	297
Bst4CI	ACNGT	3 cut(s)	70, 175, 213
BstACI	GRCGYC	1 cut(s)	309
BstDEI	CTNAG	1 cut(s)	287
BstDSI	CCRYGG	1 cut(s)	297
BstF5I	GGATG	1 cut(s)	68
BstKTI	GATC	2 cut(s)	295, 340
BstMBI	GATC	2 cut(s)	292, 337
BstNSI	RCATGY	1 cut(s)	226
BstSLI	GKGCMC	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	292
BstYI	RGATCY	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	68
BtsIMutI	CAGTG	2 cut(s)	66, 284
CaiI	CAGNNNCTG	1 cut(s)	17
Cfr13I	GGNCC	1 cut(s)	5
CviAII	CATG	3 cut(s)	161, 223, 298
CviJI	RGCY	4 cut(s)	17, 101, 135, 269
CviKI_1	RGCY	4 cut(s)	17, 101, 135, 269
DdeI	CTNAG	1 cut(s)	287
DpnI	GATC	2 cut(s)	294, 339
DpnII	GATC	2 cut(s)	292, 337
Eco130I	CCWWGG	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	297
ErhI	CCWWGG	1 cut(s)	297
FaeI	CATG	3 cut(s)	164, 226, 301
FaiI	YATR	4 cut(s)	162, 224, 299, 352
FaqI	GGGAC	1 cut(s)	288
FatI	CATG	3 cut(s)	160, 222, 297
Fnu4HI	GCNGC	1 cut(s)	325
FokI	GGATG	1 cut(s)	75
Fsp4HI	GCNGC	1 cut(s)	325
FspBI	CTAG	2 cut(s)	278, 318
GluI	GCNGC	1 cut(s)	325
GsaI	CCCAGC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	309
Hin1II	CATG	3 cut(s)	164, 226, 301
HinfI	GANTC	2 cut(s)	126, 184
Hpy188III	TCNNGA	3 cut(s)	12, 48, 146
Hpy99I	CGWCG	1 cut(s)	314
HpyAV	CCTTC	1 cut(s)	18
HpyCH4III	ACNGT	3 cut(s)	70, 175, 213
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	5 cut(s)	41, 66, 160, 200, 207
HpyF3I	CTNAG	1 cut(s)	287
HpySE526I	ACGT	1 cut(s)	309
Hsp92I	GRCGYC	1 cut(s)	309
Hsp92II	CATG	3 cut(s)	164, 226, 301
Kzo9I	GATC	2 cut(s)	292, 337
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	7 cut(s)	3, 33, 45, 60, 230, 246, 257
LweI	GCATC	1 cut(s)	53
MaeI	CTAG	2 cut(s)	278, 318
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	2 cut(s)	55, 70
MalI	GATC	2 cut(s)	294, 339
MboI	GATC	2 cut(s)	292, 337
MflI	RGATCY	1 cut(s)	292
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	1 cut(s)	81
MnlI	CCTC	3 cut(s)	153, 172, 259
NcoI	CCATGG	1 cut(s)	297
NdeII	GATC	2 cut(s)	292, 337
NlaIII	CATG	3 cut(s)	164, 226, 301
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	70
NspI	RCATGY	1 cut(s)	226
PfeI	GAWTC	2 cut(s)	126, 184
PkrI	GCNGC	1 cut(s)	326
PpuMI	RGGWCCY	1 cut(s)	5
Psp5II	RGGWCCY	1 cut(s)	5
PspFI	CCCAGC	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	5
PspPPI	RGGWCCY	1 cut(s)	5
PstNI	CAGNNNCTG	1 cut(s)	17
PsuI	RGATCY	1 cut(s)	292
SatI	GCNGC	1 cut(s)	325
Sau3AI	GATC	2 cut(s)	292, 337
Sau96I	GGNCC	1 cut(s)	5
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	6 cut(s)	19, 79, 103, 206, 235, 312
SfaNI	GCATC	1 cut(s)	53
SinI	GGWCC	1 cut(s)	5
SmlI	CTYRAG	1 cut(s)	144
SmoI	CTYRAG	1 cut(s)	144
SpeI	ACTAGT	1 cut(s)	317
Sse9I	AATT	1 cut(s)	81
SsiI	CCGC	1 cut(s)	325
SspMI	CTAG	2 cut(s)	278, 318
StyI	CCWWGG	1 cut(s)	297
TaaI	ACNGT	3 cut(s)	70, 175, 213
TaiI	ACGT	1 cut(s)	312
TasI	AATT	1 cut(s)	81
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	2 cut(s)	126, 184
TscAI	CASTG	2 cut(s)	73, 291
TseFI	GTSAC	1 cut(s)	70
Tsp45I	GTSAC	1 cut(s)	70
TspRI	CASTG	2 cut(s)	73, 291
VpaK11BI	GGWCC	1 cut(s)	5
XceI	RCATGY	1 cut(s)	226
XspI	CTAG	2 cut(s)	278, 318
ZraI	GACGTC	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.