Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0003497

Physical Location & Seq

Genomic Coordinates Reverse (-)

15744970 .. 15751997

Gene Structure 7028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG179100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3339 bp

ATGGGGAGCTCCAGAGTGAGGATCAGAGCCCGTTGGTTTCCCCATGTTGTGTTCATCGTCGTTTTGAGATTGTTGCCGTGCTTTTTGTGCCAGGACGAAGATGATTTCAGTAAGAACAAAAACCCGGCCACGCTTCCTCTTGTTACTCAGCTCTTGGAGAGCAAGCTTTCAAATCTCACCAAGTATTTAAGCAAAGACCTTAGAGGTCATATGGAGTACTGCATTAAGAATGTGGAAGATGATTGGAATGGAGCATTCAATTATACGGGGAGGCTTGAATTCCTGTCTAATTGTATAAAAAACTCGAAAGGAGAAGTCAGTAGTCGAATATGTACAGCAGCGGAAATGAGGTACTATTTCTCGAGTTTCACTAACATTGGGATCACTGACGATGGGGTACCGCATCAGTTAACCTACTTGAAACCAAACCTGAACTGCAACTTGACCAATTGGGAAGCCGGATGCGAACCTGGTTGGGGTTGTAGTCTTGATGGTGAGGACAAGGTTGACCTCAAAGTTTCACACATTCCTGCTAGAACCACAGATTGTCAGCCTTGTTGTGAAGGTTTTTTCTGCCCTGAGGGAATCACTTGCATGATCCCTTGTCCTTTAGGTGCTTACTGTCCCCGTGCAAAACTAAACCAAACGAGTGGATTATGTGACCCATATACTTACCAAGTACCTGCAGGAGAACCAAATCATACTTGTGGTGGTGCAGATGTTTGGACTGATGCGAGTAAAACTGATGTATTTTGTTCATCTGGTTCATACTGCCCCACTACCATAAAGAAATACACTTGCAGTAGTGGATTTTACTGCAGGATGGGTTCCACATATCAAAAACCATGCTTGAAGTTGACTGACTGTGGTCGAGGTACTGCAAATCAAAAGATTCATGCATACGGGATCTTCCTTGTTGTTGCACTGAGTTTTATTTTGATCATAATTTATAACTGCTCTGATCAAGTTCTGCTGATTCGGGAAAGAAAAGCAGCTAAGTCTAGGGAAGCTGCAGCAAGACATGCACGAGAAACTGCACAAGCACGCGAAAGATGGAAAGCTGCAAAAGAAGGCCTTAAGAAGCGTAAAGTGGGATTGCAAGAGCAGATGTCCCGCACATTTTCTCGCAAAAAATCTACAAGGAATTCAGAGCCTCTGAAGATTTCAGGTCATCTTAAACCTGGTACAGATCATACTTCAACAGCACCTAAGATACCTGGTACATTAAGCTCATCTGAGCAATTATCACCAGCTTCAAAATCAAAGAATAAGGAACCAAGCAACCTTACCCAAATGTTGCAATCCCTAGACGATGATCCGCATAGTACTGAAGGCTTTAATCTTCAGATTGGTGATAAAAATATTAAAAGGCAAGCCCCAAAAGTTAAAAATCTGCATACTCACAGTCAAATTTTTAAGTATGCATATGGTCAACTCGAGAAGGAGAAAGCTATGCAACAAGAAAGCAAGAACTTGACCTTTACGGGTATAATCCAAATGGCCAAGGACACTGAGGTCAAGACTCGCCCTGCGATCGAAGTAGATTTTAAAGATTTAACTCTCACTCTGAAAGGAAAAGATAAAAATCTTTTGAGGAGTGTTACTGGAAAACTTTTTCCTGGTCGAGTTTCAGCAGTCATGGGCCCTTCAGGAGCTGGGAAAACAACATTTCTGTCTGCATTATCAGGAAAAGTAACTGGATGCACTGTGACAGGTTCAATTCTAATAAATGGAAAAGCTGAACCAATGACTGCCTACAAGAGAATCATTGGCTTTGTGCCTCAAGACGATGTTGTGCATGGAAACTTGACTGTGGAGGAGAATCTCCGATTTAGTGCAAGGTGCAGACTGTCTGCCAACATGCCAAAACCTGATAAAGTCCTGGTTGTTGAAAGAGTTATTGAGGCTCTGGGACTAGGGGCAGTGAGAGATTCCGTGGTTGGTACTGTGGAGAAGCGTGGAATCTCTGGAGGGCAAAGGAAACGTGTTAATGTTGGGTTAGAGATGGTCATGGAACCTTCATTGCTGATCTTGGATGAGCCTACGACGGGTTTGGACAGTGCATCTTCCCAGTTACTTCTTAAAGCCCTTCGACGTGAAGCTCGTGAAGGGGTAAACATCTGTATGGTACTTCACCAGCCAAGCTATTCCTTATTCAGGATGTTTGATGATTTCATTCTTTTAGCCAAAGGTGGTCTTACTGTATATCATGGATCTGTAAAGAAAGTTGAAGAGTATTTTGCTGGCATCGGGATTGTTGTACCAGAACGTGTTAATCCTCCGGACTACTTCATTGACATTTTGGAAGGTATAGTGAAACCAAGCTCAGGTGTGAATCATGAAGAACTTCCAGTTAGATGGATGCTACATAATGGGTACCCAGTACCTCAAGATATGATGCACTATCTAGATGGAATTGCTGCAAGCTCAGCGGGCCCAAAACCTGTAATGAGGAGAGATCAATCTTTTGCTGGAGATTTGTGGCGGGATGTGAAGACTAATGTTGAGGTGAAAAAAGATCACTTAAGACATAACTTCCTAGTGTCCCAGGATTTATCAGACCGAATTACTCCTGGTATCTTCCGGCAGTACAGATATTACCTAGGGAGGGTAGGTAAGCAGCGGCTACGAGACGCTCAAATGCTGGCAGCGGATTATCTGATTATGTTACTTGCCGGAGCCATCTTAGGGATTTTTTCAAAAATGAATGATGAAACATTTGGTTTCAACGGCTACACTTATACTGTCATTGCTGTTTCACTACTTTGCAAAATATCAGCATTGAGAACCTTCTCTCTTGACAAATTACACTACTGGAGAGAGAGTGCATCTGGGATCAGCAGTCTGGCTCATTTTCTATCCAAAGATACAATGGACCATTTCAATACAGTCATCAAACCTTTGGTGTATCTATCCACATTCTATTTCTTTAGCAACCCAAGGTCATCGTTTCAAGACAATTACATTGTTTTGCTCTGCCTTGTGTACTGTACGACTGGCATAGGTTACGCACTTGCCATCTACCTTGACCCGAGTCCGGCCCAACTGAGCTCAGTGCTTCTTCCGGTTGTATTGACCCTCATTGCAACCCAAGCTAAAGACAGTAAAATTGCAGGGCATGTAGCCAAGTTTTGCTACACAAAGTGGGCACTAGAAGCTTTTGTTATTGCAAATGCCGAAAGGTACTCTGGGGTGTGGCTGATCAGTCGCTGCACGGCATTATATAGAAGAGGCTATGACCTTAATGATTGGACCCTCTGTCTGGTCACCCTCGTGGTGATCGGTCTACTTACTCGTATCTTGGCTTTCATTCTGTTGTTGATAACTCAAAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0008150 GO:0009506 GO:0015399 GO:0015405 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0031224 GO:0042623 GO:0042626 GO:0043492 GO:0044425 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC_tran

Protein Analysis

1112

Amino Acids

123.87

Weight (kDa)

9.09

Isoelectric Point (pI)

35.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	531 - 683	6.2e-24	ABC transporter
ABC2_membrane_7	PF19055	712 - 1112	8.3e-213	ABC-2 type transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003497)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37010 AT2G37010
fragaria_vesca	FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150 FvH4_6g16150
malus_domestica	MD12G1115400.v1.1
prunus_persica	Prupe.6G234500_v2.0.a1
rosa_chinensis	RchiOBHm_Chr3g0469991
rosa_laevigata	RLG00000024306
rosa_multiflora	Rmu_sc0000831.1_g000026 Rmu_sc0003342.1_g000004 Rmu_sc0007963.1_g000003 Rmu_sc0008347.1_g000006 Rmu_sc0020091.1_g000002 Rmu_ssc0000397.1_g000046
rosa_roxburghii	Rroxscaffold_6G00411310
rosa_rugosa	Rorug03G0105900 Rorug03G0105900
rosa_samantha	Rh1AG175800 Rh1CG163700 Rh2BG425000 Rh3AG155000 Rh3BG179100 Rh3CG169700 Rh3DG196100 Rh4CG158900 Rh5AG391600 Rh5CG032200 Rh7CG425900
rosa_wichuraiana	Rw3G014600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	951
AasI	GACNNNNNNGTC	1 cut(s)	1514
Acc36I	ACCTGC	1 cut(s)	691
Acc65I	GGTACC	2 cut(s)	397, 2376
AccB1I	GGYRCC	2 cut(s)	397, 2376
AccI	GTMKAC	1 cut(s)	3286
AccII	CGCG	1 cut(s)	1047
AccIII	TCCGGA	1 cut(s)	2281
AciI	CCGC	8 cut(s)	341, 401, 1114, 1319, 2432, 2485, 2623, 2651
AclWI	GGATC	7 cut(s)	29, 389, 592, 914, 1310, 2221, 2843
AcoI	YGGCCR	2 cut(s)	126, 1500
AcsI	RAATTY	3 cut(s)	278, 1144, 1410
AcuI	CTGAAG	4 cut(s)	1178, 1328, 1350, 1632
AdeI	CACNNNGTG	1 cut(s)	3144
AfiI	CCNNNNNNNGG	9 cut(s)	18, 476, 2048, 2157, 2327, 2608, 2688, 3037, 3262
AflII	CTTAAG	2 cut(s)	1076, 2524
AflIII	ACRYGT	2 cut(s)	1984, 2269
AhdI	GACNNNNNGTC	1 cut(s)	3258
AjiI	CACGTC	1 cut(s)	2096
AjnI	CCWGG	8 cut(s)	90, 469, 1180, 1216, 1618, 1881, 2547, 2572
AleI	CACNNNNGTG	1 cut(s)	3272
Alw21I	GWGCWC	2 cut(s)	11, 3053
Alw26I	GTCTC	1 cut(s)	2625
AlwI	GGATC	7 cut(s)	29, 389, 592, 914, 1310, 2221, 2843
AlwNI	CAGNNNCTG	2 cut(s)	1655, 3210
Ama87I	CYCGRG	3 cut(s)	361, 1436, 3031
Aor13HI	TCCGGA	1 cut(s)	2281
AoxI	GGCC	6 cut(s)	126, 1072, 1500, 1642, 2434, 3039
ApaI	GGGCCC	2 cut(s)	1646, 2438
ApeKI	GCWGC	9 cut(s)	338, 992, 1010, 1013, 1061, 2420, 2620, 2648, 3210
ApoI	RAATTY	3 cut(s)	278, 1144, 1410
Asp700I	GAANNNNTTC	1 cut(s)	2346
Asp718I	GGTACC	2 cut(s)	397, 2376
AspA2I	CCTAGG	1 cut(s)	2602
AspS9I	GGNCC	7 cut(s)	1642, 1643, 2434, 2435, 2875, 3040, 3252
AsuC2I	CCSGG	1 cut(s)	125
AsuHPI	GGTGA	8 cut(s)	169, 506, 1239, 1364, 2126, 2521, 3259, 3289
AvaI	CYCGRG	3 cut(s)	361, 1436, 3031
AvaII	GGWCC	2 cut(s)	2875, 3252
AvrII	CCTAGG	1 cut(s)	2602
AxyI	CCTNAGG	1 cut(s)	579
BaeGI	GKGCMC	3 cut(s)	1646, 2438, 3151
BalI	TGGCCA	1 cut(s)	1502
BanI	GGYRCC	2 cut(s)	397, 2376
BanII	GRGCYC	5 cut(s)	11, 31, 1646, 2438, 3053
BauI	CACGAG	3 cut(s)	1026, 2103, 3272
BbsI	GAAGAC	1 cut(s)	2501
Bbv12I	GWGCWC	2 cut(s)	11, 3053
BbvI	GCAGC	9 cut(s)	350, 997, 1004, 1025, 1048, 2407, 2632, 2660, 3197
BccI	CCATC	9 cut(s)	386, 485, 817, 1047, 1999, 2352, 2405, 2690, 3026
BceAI	ACGGC	3 cut(s)	61, 2746, 3231
BciT130I	CCWGG	8 cut(s)	92, 471, 1182, 1218, 1620, 1883, 2549, 2574
BclI	TGATCA	3 cut(s)	939, 961, 3201
BcnI	CCSGG	1 cut(s)	125
BcoDI	GTCTC	1 cut(s)	2625
BfaI	CTAG	8 cut(s)	534, 1002, 1307, 1916, 2408, 2540, 2603, 3152
BfmI	CTRYAG	3 cut(s)	684, 817, 1011
BfrI	CTTAAG	2 cut(s)	1076, 2524
BfuAI	ACCTGC	1 cut(s)	691
BlnI	CCTAGG	1 cut(s)	2602
BlpI	GCTNAGC	1 cut(s)	2428
BmcAI	AGTACT	2 cut(s)	218, 1327
Bme1390I	CCNGG	9 cut(s)	92, 125, 471, 1182, 1218, 1620, 1883, 2549, 2574
Bme18I	GGWCC	2 cut(s)	2875, 3252
BmeRI	GACNNNNNGTC	1 cut(s)	3258
BmeT110I	CYCGRG	3 cut(s)	361, 1436, 3031
BmgBI	CACGTC	1 cut(s)	2096
BmgT120I	GGNCC	7 cut(s)	1642, 1643, 2434, 2435, 2875, 3040, 3252
BmiI	GGNNCC	9 cut(s)	399, 829, 1275, 1644, 2016, 2378, 2436, 2680, 3254
BmrFI	CCNGG	9 cut(s)	92, 125, 471, 1182, 1218, 1620, 1883, 2549, 2574
BmrI	ACTGGG	2 cut(s)	2065, 2375
BmsI	GCATC	9 cut(s)	412, 452, 721, 1691, 2072, 2256, 2352, 2388, 2837
BmuI	ACTGGG	2 cut(s)	2065, 2375
BoxI	GACNNNNGTC	2 cut(s)	867, 3033
BpiI	GAAGAC	1 cut(s)	2501
BpmI	CTGGAG	3 cut(s)	1989, 2493, 2836
Bpu10I	CCTNAGC	1 cut(s)	2326
Bpu1102I	GCTNAGC	1 cut(s)	2428
BpuEI	CTTGAG	2 cut(s)	1767, 2373
BpuMI	CCSGG	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	1584
BsaJI	CCNNGG	5 cut(s)	1503, 1935, 2547, 2602, 2939
BsaWI	WCCGGW	2 cut(s)	2281, 3064
BsaXI	ACNNNNNCTCC	4 cut(s)	2599, 2629, 2809, 2839
Bsc4I	CCNNNNNNNGG	9 cut(s)	18, 476, 2048, 2157, 2327, 2608, 2688, 3037, 3262
Bse1I	ACTGG	7 cut(s)	1609, 1702, 2071, 2351, 2381, 2819, 3001
Bse21I	CCTNAGG	1 cut(s)	579
Bse3DI	GCAATG	3 cut(s)	2021, 2748, 3081
Bse8I	GATNNNNATC	1 cut(s)	1584
BseAI	TCCGGA	1 cut(s)	2281
BseBI	CCWGG	8 cut(s)	92, 471, 1182, 1218, 1620, 1883, 2549, 2574
BseDI	CCNNGG	5 cut(s)	1503, 1935, 2547, 2602, 2939
BseGI	GGATG	7 cut(s)	467, 828, 1706, 2041, 2166, 2367, 2494
BseJI	GATNNNNATC	1 cut(s)	1584
BseLI	CCNNNNNNNGG	9 cut(s)	18, 476, 2048, 2157, 2327, 2608, 2688, 3037, 3262
BseMI	GCAATG	3 cut(s)	2021, 2748, 3081
BseMII	CTCAG	9 cut(s)	161, 570, 917, 1227, 1503, 2340, 2442, 3038, 3066
BseNI	ACTGG	7 cut(s)	1609, 1702, 2071, 2351, 2381, 2819, 3001
BseRI	GAGGAG	3 cut(s)	1609, 1832, 2467
BseSI	GKGCMC	3 cut(s)	1646, 2438, 3151
BseXI	GCAGC	9 cut(s)	350, 997, 1004, 1025, 1048, 2407, 2632, 2660, 3197
BseYI	CCCAGC	1 cut(s)	1655
BsgI	GTGCAG	4 cut(s)	735, 1020, 1864, 3196
Bsh1236I	CGCG	1 cut(s)	1047
Bsh1285I	CGRYCG	1 cut(s)	1536
BshFI	GGCC	6 cut(s)	128, 1074, 1502, 1644, 2436, 3041
BshNI	GGYRCC	2 cut(s)	397, 2376
BsiEI	CGRYCG	1 cut(s)	1536
BsiHKAI	GWGCWC	2 cut(s)	11, 3053
BsiHKCI	CYCGRG	3 cut(s)	361, 1436, 3031
BsiSI	CCGG	7 cut(s)	125, 459, 2282, 2584, 2676, 3038, 3065
BslFI	GGGAC	4 cut(s)	609, 1096, 1926, 2530
BslI	CCNNNNNNNGG	9 cut(s)	18, 476, 2048, 2157, 2327, 2608, 2688, 3037, 3262
BsmAI	GTCTC	1 cut(s)	2625
BsmBI	CGTCTC	1 cut(s)	2625
BsmFI	GGGAC	4 cut(s)	609, 1096, 1926, 2530
BsmI	GAATGC	1 cut(s)	254
BsnI	GGCC	6 cut(s)	128, 1074, 1502, 1644, 2436, 3041
BsoBI	CYCGRG	3 cut(s)	361, 1436, 3031
Bsp120I	GGGCCC	2 cut(s)	1642, 2434
Bsp1286I	GDGCHC	6 cut(s)	11, 31, 1646, 2438, 3053, 3151
Bsp13I	TCCGGA	1 cut(s)	2281
Bsp1407I	TGTACA	1 cut(s)	332
Bsp1720I	GCTNAGC	1 cut(s)	2428
BspACI	CCGC	8 cut(s)	341, 401, 1114, 1319, 2432, 2485, 2623, 2651
BspANI	GGCC	6 cut(s)	128, 1074, 1502, 1644, 2436, 3041
BspCNI	CTCAG	9 cut(s)	160, 571, 918, 1228, 1504, 2339, 2441, 3039, 3065
BspEI	TCCGGA	1 cut(s)	2281
BspFNI	CGCG	1 cut(s)	1047
BspHI	TCATGA	1 cut(s)	2338
BspLI	GGNNCC	9 cut(s)	399, 829, 1275, 1644, 2016, 2378, 2436, 2680, 3254
BspMAI	CTGCAG	3 cut(s)	688, 821, 1015
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	7 cut(s)	29, 389, 592, 914, 1310, 2221, 2843
BspT107I	GGYRCC	2 cut(s)	397, 2376
BspTI	CTTAAG	2 cut(s)	1076, 2524
BsrDI	GCAATG	3 cut(s)	2021, 2748, 3081
BsrGI	TGTACA	1 cut(s)	332
BsrI	ACTGG	7 cut(s)	1609, 1702, 2071, 2351, 2381, 2819, 3001
BssECI	CCNNGG	5 cut(s)	1503, 1935, 2547, 2602, 2939
BssSI	CACGAG	3 cut(s)	1026, 2103, 3272
BssT1I	CCWWGG	3 cut(s)	1503, 2602, 2939
Bst2BI	CACGAG	3 cut(s)	1026, 2103, 3272
Bst2UI	CCWGG	8 cut(s)	92, 471, 1182, 1218, 1620, 1883, 2549, 2574
Bst6I	CTCTTC	2 cut(s)	2226, 3223
BstAFI	CTTAAG	2 cut(s)	1076, 2524
BstAPI	GCANNNNNTGC	1 cut(s)	1022
BstAUI	TGTACA	1 cut(s)	332
BstC8I	GCNNGC	7 cut(s)	164, 1045, 1374, 2245, 2425, 2434, 2646
BstDSI	CCRYGG	1 cut(s)	1935
BstEII	GGTNACC	1 cut(s)	3265
BstENI	CCTNNNNNAGG	1 cut(s)	2155
BstF5I	GGATG	7 cut(s)	467, 828, 1706, 2041, 2166, 2367, 2494
BstFNI	CGCG	1 cut(s)	1047
BstMAI	GTCTC	1 cut(s)	2625
BstMCI	CGRYCG	1 cut(s)	1536
BstMWI	GCNNNNNNNGC	6 cut(s)	87, 1022, 2429, 2433, 3092, 3155
BstNI	CCWGG	8 cut(s)	92, 471, 1182, 1218, 1620, 1883, 2549, 2574
BstNSI	RCATGY	3 cut(s)	1025, 1864, 3122
BstPAI	GACNNNNGTC	2 cut(s)	867, 3033
BstPI	GGTNACC	1 cut(s)	3265
BstSCI	CCNGG	9 cut(s)	90, 123, 469, 1180, 1216, 1618, 1881, 2547, 2572
BstSFI	CTRYAG	3 cut(s)	684, 817, 1011
BstSLI	GKGCMC	3 cut(s)	1646, 2438, 3151
BstUI	CGCG	1 cut(s)	1047
BstV1I	GCAGC	9 cut(s)	350, 997, 1004, 1025, 1048, 2407, 2632, 2660, 3197
BstV2I	GAAGAC	1 cut(s)	2501
BstX2I	RGATCY	2 cut(s)	906, 2213
BstXI	CCANNNNNNTGG	2 cut(s)	650, 2358
BstYI	RGATCY	2 cut(s)	906, 2213
Bsu36I	CCTNAGG	1 cut(s)	579
BsuRI	GGCC	6 cut(s)	128, 1074, 1502, 1644, 2436, 3041
BtgI	CCRYGG	1 cut(s)	1935
BtrI	CACGTC	1 cut(s)	2096
BtsCI	GGATG	7 cut(s)	467, 828, 1706, 2041, 2166, 2367, 2494
BtsI	GCAGTG	1 cut(s)	1929
BtsIMutI	CAGTG	7 cut(s)	384, 923, 1509, 1704, 1929, 2065, 3060
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	7 cut(s)	164, 1045, 1374, 2245, 2425, 2434, 2646
CaiI	CAGNNNCTG	2 cut(s)	1655, 3210
CciI	TCATGA	1 cut(s)	2338
Cfr13I	GGNCC	7 cut(s)	1642, 1643, 2434, 2435, 2875, 3040, 3252
CseI	GACGC	1 cut(s)	2642
CsiI	ACCWGGT	3 cut(s)	469, 1180, 1216
DraI	TTTAAA	1 cut(s)	1549
DraIII	CACNNNGTG	1 cut(s)	3144
DrdI	GACNNNNNNGTC	1 cut(s)	1514
DriI	GACNNNNNGTC	1 cut(s)	3258
DseDI	GACNNNNNNGTC	1 cut(s)	1514
EaeI	YGGCCR	2 cut(s)	126, 1500
Eam1104I	CTCTTC	2 cut(s)	2226, 3223
Eam1105I	GACNNNNNGTC	1 cut(s)	3258
EarI	CTCTTC	2 cut(s)	2226, 3223
Ecl136II	GAGCTC	2 cut(s)	9, 3051
Eco130I	CCWWGG	3 cut(s)	1503, 2602, 2939
Eco147I	AGGCCT	1 cut(s)	1074
Eco24I	GRGCYC	5 cut(s)	11, 31, 1646, 2438, 3053
Eco47I	GGWCC	2 cut(s)	2875, 3252
Eco53kI	GAGCTC	2 cut(s)	9, 3051
Eco57I	CTGAAG	4 cut(s)	1178, 1328, 1350, 1632
Eco81I	CCTNAGG	1 cut(s)	579
Eco88I	CYCGRG	3 cut(s)	361, 1436, 3031
Eco91I	GGTNACC	1 cut(s)	3265
EcoICRI	GAGCTC	2 cut(s)	9, 3051
EcoNI	CCTNNNNNAGG	1 cut(s)	2155
EcoO109I	RGGNCCY	1 cut(s)	1643
EcoO65I	GGTNACC	1 cut(s)	3265
EcoRI	GAATTC	2 cut(s)	278, 1144
EcoRII	CCWGG	8 cut(s)	90, 469, 1180, 1216, 1618, 1881, 2547, 2572
EcoT14I	CCWWGG	3 cut(s)	1503, 2602, 2939
EcoT22I	ATGCAT	2 cut(s)	901, 1426
EcoT38I	GRGCYC	5 cut(s)	11, 31, 1646, 2438, 3053
ErhI	CCWWGG	3 cut(s)	1503, 2602, 2939
Esp3I	CGTCTC	1 cut(s)	2625
FalI	AAGNNNNNCTT	4 cut(s)	1059, 1091, 2181, 2213
FaqI	GGGAC	4 cut(s)	609, 1096, 1926, 2530
FauI	CCCGC	3 cut(s)	1121, 2425, 2478
FauNDI	CATATG	2 cut(s)	210, 1426
FbaI	TGATCA	3 cut(s)	939, 961, 3201
FblI	GTMKAC	1 cut(s)	3286
FokI	GGATG	7 cut(s)	474, 835, 1713, 2048, 2173, 2374, 2501
FriOI	GRGCYC	5 cut(s)	11, 31, 1646, 2438, 3053
FspBI	CTAG	8 cut(s)	534, 1002, 1307, 1916, 2408, 2540, 2603, 3152
GsaI	CCCAGC	1 cut(s)	1659
GsuI	CTGGAG	3 cut(s)	1989, 2493, 2836
HaeIII	GGCC	6 cut(s)	128, 1074, 1502, 1644, 2436, 3041
HapII	CCGG	7 cut(s)	125, 459, 2282, 2584, 2676, 3038, 3065
HgaI	GACGC	1 cut(s)	2642
HincII	GTYRAC	4 cut(s)	411, 508, 858, 1433
HindII	GTYRAC	4 cut(s)	411, 508, 858, 1433
HindIII	AAGCTT	2 cut(s)	164, 3156
HpaI	GTTAAC	1 cut(s)	411
HpaII	CCGG	7 cut(s)	125, 459, 2282, 2584, 2676, 3038, 3065
HphI	GGTGA	8 cut(s)	169, 506, 1239, 1364, 2126, 2521, 3259, 3289
Hpy166II	GTNNAC	7 cut(s)	411, 508, 858, 1433, 2116, 2986, 3287
Hpy8I	GTNNAC	7 cut(s)	411, 508, 858, 1433, 2116, 2986, 3287
Hpy99I	CGWCG	3 cut(s)	62, 2050, 2097
HpyCH4IV	ACGT	3 cut(s)	1984, 2095, 2269
HpyF10VI	GCNNNNNNNGC	6 cut(s)	87, 1022, 2429, 2433, 3092, 3155
HpySE526I	ACGT	3 cut(s)	1984, 2095, 2269
Kpn2I	TCCGGA	1 cut(s)	2281
KpnI	GGTACC	2 cut(s)	401, 2380
Ksp22I	TGATCA	3 cut(s)	939, 961, 3201
KspAI	GTTAAC	1 cut(s)	411
LmnI	GCTCC	5 cut(s)	6, 14, 251, 1652, 2678
Lsp1109I	GCAGC	9 cut(s)	350, 997, 1004, 1025, 1048, 2407, 2632, 2660, 3197
LweI	GCATC	9 cut(s)	412, 452, 721, 1691, 2072, 2256, 2352, 2388, 2837
MabI	ACCWGGT	3 cut(s)	469, 1180, 1216
MaeI	CTAG	8 cut(s)	534, 1002, 1307, 1916, 2408, 2540, 2603, 3152
MaeII	ACGT	3 cut(s)	1984, 2095, 2269
MaeIII	GTNAC	9 cut(s)	142, 659, 1600, 1693, 1708, 2073, 2667, 3005, 3265
MfeI	CAATTG	1 cut(s)	448
MflI	RGATCY	2 cut(s)	906, 2213
MhlI	GDGCHC	6 cut(s)	11, 31, 1646, 2438, 3053, 3151
MlsI	TGGCCA	1 cut(s)	1502
MluNI	TGGCCA	1 cut(s)	1502
MlyI	GAGTC	2 cut(s)	1516, 3043
Mox20I	TGGCCA	1 cut(s)	1502
Mph1103I	ATGCAT	2 cut(s)	901, 1426
MroI	TCCGGA	1 cut(s)	2281
MroXI	GAANNNNTTC	1 cut(s)	2346
MscI	TGGCCA	1 cut(s)	1502
MslI	CAYNNNNRTG	4 cut(s)	593, 705, 2123, 3272
Msp20I	TGGCCA	1 cut(s)	1502
MspA1I	CMGCKG	4 cut(s)	341, 2432, 2623, 2651
MspCI	CTTAAG	2 cut(s)	1076, 2524
MspI	CCGG	7 cut(s)	125, 459, 2282, 2584, 2676, 3038, 3065
MspR9I	CCNGG	9 cut(s)	92, 125, 471, 1182, 1218, 1620, 1883, 2549, 2574
MunI	CAATTG	1 cut(s)	448
Mva1269I	GAATGC	1 cut(s)	254
MvaI	CCWGG	8 cut(s)	92, 471, 1182, 1218, 1620, 1883, 2549, 2574
MvnI	CGCG	1 cut(s)	1047
MwoI	GCNNNNNNNGC	6 cut(s)	87, 1022, 2429, 2433, 3092, 3155
NciI	CCSGG	1 cut(s)	125
NdeI	CATATG	2 cut(s)	210, 1426
NlaIV	GGNNCC	9 cut(s)	399, 829, 1275, 1644, 2016, 2378, 2436, 2680, 3254
NmuCI	GTSAC	3 cut(s)	659, 1708, 3265
NsiI	ATGCAT	2 cut(s)	901, 1426
NspI	RCATGY	3 cut(s)	1025, 1864, 3122
OliI	CACNNNNGTG	1 cut(s)	3272
PaeR7I	CTCGAG	2 cut(s)	361, 1436
PagI	TCATGA	1 cut(s)	2338
PceI	AGGCCT	1 cut(s)	1074
PcsI	WCGNNNNNNNCGW	1 cut(s)	2101
PctI	GAATGC	1 cut(s)	254
PdmI	GAANNNNTTC	1 cut(s)	2346
PfeI	GAWTC	8 cut(s)	585, 892, 976, 1764, 1822, 1931, 1962, 2335
Ple19I	CGATCG	1 cut(s)	1536
PleI	GAGTC	2 cut(s)	1516, 3042
PpsI	GAGTC	2 cut(s)	1516, 3042
PshAI	GACNNNNGTC	2 cut(s)	867, 3033
PsiI	TTATAA	1 cut(s)	951
Psp124BI	GAGCTC	2 cut(s)	11, 3053
Psp6I	CCWGG	8 cut(s)	90, 469, 1180, 1216, 1618, 1881, 2547, 2572
PspEI	GGTNACC	1 cut(s)	3265
PspFI	CCCAGC	1 cut(s)	1655
PspGI	CCWGG	8 cut(s)	90, 469, 1180, 1216, 1618, 1881, 2547, 2572
PspN4I	GGNNCC	9 cut(s)	399, 829, 1275, 1644, 2016, 2378, 2436, 2680, 3254
PspOMI	GGGCCC	2 cut(s)	1642, 2434
PspPI	GGNCC	7 cut(s)	1642, 1643, 2434, 2435, 2875, 3040, 3252
PstI	CTGCAG	3 cut(s)	688, 821, 1015
PstNI	CAGNNNCTG	2 cut(s)	1655, 3210
PsuI	RGATCY	2 cut(s)	906, 2213
PvuI	CGATCG	1 cut(s)	1536
RseI	CAYNNNNRTG	4 cut(s)	593, 705, 2123, 3272
SacI	GAGCTC	2 cut(s)	11, 3053
Sau96I	GGNCC	7 cut(s)	1642, 1643, 2434, 2435, 2875, 3040, 3252
SbfI	CCTGCAGG	1 cut(s)	688
ScaI	AGTACT	2 cut(s)	218, 1327
SchI	GAGTC	2 cut(s)	1516, 3043
ScrFI	CCNGG	9 cut(s)	92, 125, 471, 1182, 1218, 1620, 1883, 2549, 2574
SdaI	CCTGCAGG	1 cut(s)	688
SduI	GDGCHC	6 cut(s)	11, 31, 1646, 2438, 3053, 3151
SexAI	ACCWGGT	3 cut(s)	469, 1180, 1216
SfaNI	GCATC	9 cut(s)	412, 452, 721, 1691, 2072, 2256, 2352, 2388, 2837
SfcI	CTRYAG	3 cut(s)	684, 817, 1011
Sfr274I	CTCGAG	2 cut(s)	361, 1436
SinI	GGWCC	2 cut(s)	2875, 3252
SlaI	CTCGAG	2 cut(s)	361, 1436
SmiMI	CAYNNNNRTG	4 cut(s)	593, 705, 2123, 3272
SmlI	CTYRAG	6 cut(s)	361, 1076, 1436, 1782, 2388, 2524
SmoI	CTYRAG	6 cut(s)	361, 1076, 1436, 1782, 2388, 2524
Sse8387I	CCTGCAGG	1 cut(s)	688
SseBI	AGGCCT	1 cut(s)	1074
SsiI	CCGC	8 cut(s)	341, 401, 1114, 1319, 2432, 2485, 2623, 2651
SspI	AATATT	1 cut(s)	1363
SspMI	CTAG	8 cut(s)	534, 1002, 1307, 1916, 2408, 2540, 2603, 3152
SstI	GAGCTC	2 cut(s)	11, 3053
StuI	AGGCCT	1 cut(s)	1074
StyD4I	CCNGG	9 cut(s)	90, 123, 469, 1180, 1216, 1618, 1881, 2547, 2572
StyI	CCWWGG	3 cut(s)	1503, 2602, 2939
TaiI	ACGT	3 cut(s)	1987, 2098, 2272
TaqI	TCGA	8 cut(s)	305, 325, 362, 871, 1437, 1536, 1624, 2092
TaqII	GACCGA	2 cut(s)	2577, 3272
TatI	WGTACW	5 cut(s)	216, 332, 1325, 2589, 2985
TauI	GCSGC	1 cut(s)	2626
TfiI	GAWTC	8 cut(s)	585, 892, 976, 1764, 1822, 1931, 1962, 2335
TscAI	CASTG	7 cut(s)	391, 930, 1516, 1711, 1929, 2065, 3060
TseFI	GTSAC	3 cut(s)	659, 1708, 3265
TseI	GCWGC	9 cut(s)	338, 992, 1010, 1013, 1061, 2420, 2620, 2648, 3210
Tsp45I	GTSAC	3 cut(s)	659, 1708, 3265
TspGWI	ACGGA	1 cut(s)	1924
TspRI	CASTG	7 cut(s)	391, 930, 1516, 1711, 1929, 2065, 3060
Vha464I	CTTAAG	2 cut(s)	1076, 2524
VpaK11BI	GGWCC	2 cut(s)	2875, 3252
XagI	CCTNNNNNAGG	1 cut(s)	2155
XapI	RAATTY	3 cut(s)	278, 1144, 1410
XbaI	TCTAGA	1 cut(s)	2407
XceI	RCATGY	3 cut(s)	1025, 1864, 3122
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2869
XhoI	CTCGAG	2 cut(s)	361, 1436
XmaJI	CCTAGG	1 cut(s)	2602
XmiI	GTMKAC	1 cut(s)	3286
XmnI	GAANNNNTTC	1 cut(s)	2346
XspI	CTAG	8 cut(s)	534, 1002, 1307, 1916, 2408, 2540, 2603, 3152
ZrmI	AGTACT	2 cut(s)	218, 1327
Zsp2I	ATGCAT	2 cut(s)	901, 1426

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.