Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0013262

Physical Location & Seq

Genomic Coordinates Forward (+)

19550996 .. 19552629

Gene Structure 1634 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1110700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGTATGTTGTTAACAAAGCCCTTCCACATTCAAATCTCGGCCACCAACAACGGCTACGTCCAACGAGCCCTTCAAAACCTCCATGGACTCGACGCCCTCGACTGCGGAGCTTACGGCCACCTCATCCAGCACTGCACGGTGCGCCGCCTGGTCGGTCCGGCGAAGCAGCTCCACGCCCGCCTCGTCCTCTTCTCCGTCACCCCCGCCAACTTCCGGCTTCAAAGCTCATCAATTTTTACTCTAAAACCAATAACCTCAACTATGCCCGCAAGCTGTTCGATCAAATTCCCCATCCAAACGCCTTCTCTTGGAACGCCATGCTCGTTGGGTATTCCCTTAACAACGTGCACGTCGACACCCTGAAGCTGTTTTCGGCTATAGTGTCTTCGTGTTCGGAGCCCGACAATTTTACCGTGACTTGTGTGTTGAAGGCTCTGGGCGCTTTGCTTTCAGGTTCAAAATTGGCTAAGGAGGTTGGTTTGGCGAGAGCTTTGTTTGATAGGATGCCAGAAAGAGATATTGTGTCGTGGAATTCAGTGATTGCGGGGTATTCTCAGGCTGGGTATTATGATATTATCAGGAGTGCATGTTTACAGTCGAATGATCTTATGCTCGGTATGGAAGTTCATCAGTTTGTGAATGAGAATCAGATCAAGATGGATGTTTTGCATTGTAATGCTCTTATAGGGCTATACGCAAGATGTGGTAGCTTGGATTATGCTCAAGAATTATTCGATGAGATGAGTGAAAAGGATGAGCCATTGGATGTATTTCAAGATAGTAAGAAGCCAAAGTTAAGTACTGGGAATGCTGTGATTTCAAGTCTGGTTCAGAATAACCGGCATGAAGATGCCTTGGATTTAACTCGTGAAATGCAGTCATGTGGTTGCAAACCAAATACCGTGACATTGTCAAGTATTTTTCCTACAATATTGTATTTCTCAAATCTGAAAGTTGGGAAGGAAGTACATGCTTATGCTGTTAAAAACAATTTTGATGGGAATATTTATGTTGCAACTGCTATTATTGATACTTATGCGAAGTCGGGGTTTCTGAACGGGGCACAACGGGCTTTTGATCAAGCAAAATGTATGAGCTTAATCATTTGGAAGTCAATAATCTCAGCTTACACATCCCATGGAGATGCTGATACGCCTCTTAGCATCTTGTATAAGATGTTGAATAACGGGATTCAACCAGACCAAGTGACATTTACAACGGTATTAACAGCTTGTTCTCATTCTGGAGTGGTTGATGAGGCTTGGAAGATCTTTGATGCCATGTTTCCGAAATATGCCATTTTTCCGTCGGTTGAGCATTATGCTTGCATGGTAAGTGTTCTTAGCCGAGCTGGGAAACTCAGCGAAGCTGCAGACTTTATCCACAAAATGCCAGTTGAGATGGGAAGAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDP-OH_P_transf PPR PPR_2

Protein Analysis

472

Amino Acids

52.33

Weight (kDa)

8.85

Isoelectric Point (pI)

46.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	267 - 308	6.4e-09	PPR repeat family
PPR_2	PF13041	368 - 413	4.3e-07	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37310
fragaria_vesca	FvH4_6g14880
malus_domestica	MD04G1110700.v1.1 MD12G1130100.v1.1 MD15G1361800.v1.1
pyrus_communis	pycom04g10440 pycom12g12620
rosa_chinensis	RchiOBHm_Chr3g0468091
rosa_laevigata	RLG00000024450
rosa_multiflora	Rmu_co8293603.1_g000001 Rmu_co8334519.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413060
rosa_rugosa	Rorug03G0092600
rosa_samantha	Rh3AG141000 Rh3BG162500 Rh3CG162300 Rh3DG163000
rosa_wichuraiana	Rw3G013320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	6 cut(s)	106, 146, 179, 205, 268, 545
AcoI	YGGCCR	2 cut(s)	40, 116
AcsI	RAATTY	2 cut(s)	285, 532
AcuI	CTGAAG	1 cut(s)	383
AcyI	GRCGYC	1 cut(s)	94
AfaI	GTAC	2 cut(s)	802, 969
AfiI	CCNNNNNNNGG	2 cut(s)	214, 309
AgsI	TTSAA	9 cut(s)	33, 75, 222, 430, 459, 776, 822, 1183, 1196
AjiI	CACGTC	1 cut(s)	352
AjnI	CCWGG	1 cut(s)	148
AjuI	GAANNNNNNNTTGG	2 cut(s)	55, 87
Alw21I	GWGCWC	1 cut(s)	351
Alw44I	GTGCAC	1 cut(s)	347
AoxI	GGCC	2 cut(s)	40, 116
ApaLI	GTGCAC	1 cut(s)	347
ApeKI	GCWGC	2 cut(s)	167, 1370
ApoI	RAATTY	2 cut(s)	285, 532
AspLEI	GCGC	2 cut(s)	145, 443
AspS9I	GGNCC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	156
BaeGI	GKGCMC	2 cut(s)	351, 1066
BanII	GRGCYC	2 cut(s)	71, 402
BauI	CACGAG	1 cut(s)	867
BbsI	GAAGAC	1 cut(s)	378
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	2 cut(s)	179, 1357
BccI	CCATC	4 cut(s)	300, 652, 992, 1396
BceAI	ACGGC	2 cut(s)	68, 131
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	1 cut(s)	150
BclI	TGATCA	1 cut(s)	1078
BfmI	CTRYAG	2 cut(s)	378, 1371
BfoI	RGCGCY	1 cut(s)	444
BglII	AGATCT	1 cut(s)	1269
BisI	GCNGC	3 cut(s)	146, 168, 1371
BlsI	GCNGC	3 cut(s)	147, 169, 1372
BmcAI	AGTACT	1 cut(s)	802
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	156
BmgBI	CACGTC	1 cut(s)	352
BmgT120I	GGNCC	1 cut(s)	156
BmiI	GGNNCC	1 cut(s)	399
BmrFI	CCNGG	1 cut(s)	150
BmrI	ACTGGG	1 cut(s)	813
BmsI	GCATC	5 cut(s)	495, 841, 1135, 1173, 1267
BmuI	ACTGGG	1 cut(s)	813
BpiI	GAAGAC	1 cut(s)	378
BpmI	CTGGAG	1 cut(s)	1266
Bpu10I	CCTNAGC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	708
BsaHI	GRCGYC	1 cut(s)	94
BsaJI	CCNNGG	3 cut(s)	83, 855, 1138
BsaXI	ACNNNNNCTCC	2 cut(s)	574, 604
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 309
Bse118I	RCCGGY	1 cut(s)	840
Bse1I	ACTGG	2 cut(s)	808, 1394
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	3 cut(s)	83, 855, 1138
BseGI	GGATG	7 cut(s)	124, 292, 510, 667, 760, 772, 1133
BseLI	CCNNNNNNNGG	2 cut(s)	214, 309
BseMII	CTCAG	3 cut(s)	569, 1137, 1375
BseNI	ACTGG	2 cut(s)	808, 1394
BseSI	GKGCMC	2 cut(s)	351, 1066
BseXI	GCAGC	2 cut(s)	179, 1357
BseYI	CCCAGC	2 cut(s)	560, 1352
BsgI	GTGCAG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	42, 118
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	3 cut(s)	159, 215, 841
BslI	CCNNNNNNNGG	2 cut(s)	214, 309
BsmI	GAATGC	1 cut(s)	814
BsnI	GGCC	2 cut(s)	42, 118
Bsp1286I	GDGCHC	4 cut(s)	71, 351, 402, 1066
Bsp143I	GATC	5 cut(s)	280, 604, 651, 1078, 1269
Bsp19I	CCATGG	2 cut(s)	83, 1138
BspACI	CCGC	6 cut(s)	106, 146, 179, 205, 268, 545
BspANI	GGCC	2 cut(s)	42, 118
BspCNI	CTCAG	3 cut(s)	568, 1136, 1374
BspLI	GGNNCC	1 cut(s)	399
BspMAI	CTGCAG	1 cut(s)	1375
BsrFI	RCCGGY	1 cut(s)	840
BsrI	ACTGG	2 cut(s)	808, 1394
BssAI	RCCGGY	1 cut(s)	840
BssECI	CCNNGG	3 cut(s)	83, 855, 1138
BssMI	GATC	5 cut(s)	280, 604, 651, 1078, 1269
BssNI	GRCGYC	1 cut(s)	94
BssSI	CACGAG	1 cut(s)	867
BssT1I	CCWWGG	3 cut(s)	83, 855, 1138
Bst2BI	CACGAG	1 cut(s)	867
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	5 cut(s)	140, 415, 597, 904, 1222
Bst6I	CTCTTC	1 cut(s)	195
BstACI	GRCGYC	1 cut(s)	94
BstC8I	GCNNGC	4 cut(s)	179, 268, 272, 1327
BstDEI	CTNAG	6 cut(s)	468, 555, 1123, 1160, 1343, 1361
BstDSI	CCRYGG	2 cut(s)	83, 1138
BstF5I	GGATG	7 cut(s)	124, 292, 510, 667, 760, 772, 1133
BstH2I	RGCGCY	1 cut(s)	444
BstHHI	GCGC	2 cut(s)	145, 443
BstKTI	GATC	5 cut(s)	283, 607, 654, 1081, 1272
BstMBI	GATC	5 cut(s)	280, 604, 651, 1078, 1269
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 440, 1070
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	2 cut(s)	591, 974
BstSCI	CCNGG	1 cut(s)	148
BstSFI	CTRYAG	2 cut(s)	378, 1371
BstSLI	GKGCMC	2 cut(s)	351, 1066
BstV1I	GCAGC	2 cut(s)	179, 1357
BstV2I	GAAGAC	1 cut(s)	378
BstX2I	RGATCY	1 cut(s)	1269
BstYI	RGATCY	1 cut(s)	1269
BsuRI	GGCC	2 cut(s)	42, 118
BtgI	CCRYGG	2 cut(s)	83, 1138
BtrI	CACGTC	1 cut(s)	352
BtsCI	GGATG	7 cut(s)	124, 292, 510, 667, 760, 772, 1133
BtsI	GCAGTG	1 cut(s)	131
BtsIMutI	CAGTG	2 cut(s)	131, 543
Cac8I	GCNNGC	4 cut(s)	179, 268, 272, 1327
CfoI	GCGC	2 cut(s)	145, 443
Cfr10I	RCCGGY	1 cut(s)	840
Cfr13I	GGNCC	1 cut(s)	156
CpoI	CGGWCCG	1 cut(s)	156
CseI	GACGC	1 cut(s)	102
Csp6I	GTAC	2 cut(s)	801, 968
CspI	CGGWCCG	1 cut(s)	156
CviAII	CATG	9 cut(s)	84, 319, 588, 845, 882, 971, 1139, 1282, 1330
CviQI	GTAC	2 cut(s)	801, 968
DdeI	CTNAG	6 cut(s)	468, 555, 1123, 1160, 1343, 1361
DpnI	GATC	5 cut(s)	282, 606, 653, 1080, 1271
DpnII	GATC	5 cut(s)	280, 604, 651, 1078, 1269
EaeI	YGGCCR	2 cut(s)	40, 116
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco130I	CCWWGG	3 cut(s)	83, 855, 1138
Eco24I	GRGCYC	2 cut(s)	71, 402
Eco47I	GGWCC	1 cut(s)	156
Eco57I	CTGAAG	1 cut(s)	383
EcoRI	GAATTC	1 cut(s)	532
EcoRII	CCWGG	1 cut(s)	148
EcoT14I	CCWWGG	3 cut(s)	83, 855, 1138
EcoT38I	GRGCYC	2 cut(s)	71, 402
ErhI	CCWWGG	3 cut(s)	83, 855, 1138
FaeI	CATG	9 cut(s)	87, 322, 591, 848, 885, 974, 1142, 1285, 1333
FatI	CATG	9 cut(s)	83, 318, 587, 844, 881, 970, 1138, 1281, 1329
FauI	CCCGC	4 cut(s)	186, 212, 275, 538
FbaI	TGATCA	1 cut(s)	1078
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	146, 168, 1371
FokI	GGATG	7 cut(s)	111, 279, 517, 674, 767, 779, 1120
FriOI	GRGCYC	2 cut(s)	71, 402
Fsp4HI	GCNGC	3 cut(s)	146, 168, 1371
GlaI	GCGC	2 cut(s)	144, 442
GluI	GCNGC	3 cut(s)	146, 168, 1371
GsaI	CCCAGC	2 cut(s)	564, 1356
GsuI	CTGGAG	1 cut(s)	1266
HaeII	RGCGCY	1 cut(s)	444
HaeIII	GGCC	2 cut(s)	42, 118
HapII	CCGG	3 cut(s)	159, 215, 841
HgaI	GACGC	1 cut(s)	102
HhaI	GCGC	2 cut(s)	145, 443
Hin1I	GRCGYC	1 cut(s)	94
Hin1II	CATG	9 cut(s)	87, 322, 591, 848, 885, 974, 1142, 1285, 1333
Hin6I	GCGC	2 cut(s)	143, 441
HinP1I	GCGC	2 cut(s)	143, 441
HincII	GTYRAC	2 cut(s)	13, 355
HindII	GTYRAC	2 cut(s)	13, 355
HinfI	GANTC	3 cut(s)	88, 646, 1192
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	3 cut(s)	159, 215, 841
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	4 cut(s)	13, 349, 355, 593
Hpy188I	TCNGA	6 cut(s)	397, 651, 834, 951, 1056, 1290
Hpy188III	TCNNGA	6 cut(s)	580, 655, 725, 776, 869, 1245
Hpy8I	GTNNAC	4 cut(s)	13, 349, 355, 593
Hpy99I	CGWCG	3 cut(s)	96, 356, 1312
HpyAV	CCTTC	5 cut(s)	32, 81, 313, 424, 955
HpyCH4III	ACNGT	5 cut(s)	140, 415, 597, 904, 1222
HpyCH4IV	ACGT	3 cut(s)	58, 345, 351
HpyCH4V	TGCA	9 cut(s)	136, 349, 587, 670, 877, 891, 1016, 1329, 1373
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 440, 1070
HpyF3I	CTNAG	6 cut(s)	468, 555, 1123, 1160, 1343, 1361
HpySE526I	ACGT	3 cut(s)	58, 345, 351
Hsp92I	GRCGYC	1 cut(s)	94
Hsp92II	CATG	9 cut(s)	87, 322, 591, 848, 885, 974, 1142, 1285, 1333
HspAI	GCGC	2 cut(s)	143, 441
Ksp22I	TGATCA	1 cut(s)	1078
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	5 cut(s)	280, 604, 651, 1078, 1269
LmnI	GCTCC	3 cut(s)	108, 175, 397
Lsp1109I	GCAGC	2 cut(s)	179, 1357
LweI	GCATC	5 cut(s)	495, 841, 1135, 1173, 1267
MaeII	ACGT	3 cut(s)	58, 345, 351
MaeIII	GTNAC	4 cut(s)	197, 415, 904, 1207
MalI	GATC	5 cut(s)	282, 606, 653, 1080, 1271
MboI	GATC	5 cut(s)	280, 604, 651, 1078, 1269
MboII	GAAGA	4 cut(s)	182, 378, 860, 1279
MflI	RGATCY	1 cut(s)	1269
MhlI	GDGCHC	4 cut(s)	71, 351, 402, 1066
MluCI	AATT	7 cut(s)	232, 285, 406, 461, 532, 728, 991
MlyI	GAGTC	1 cut(s)	82
MmeI	TCCRAC	1 cut(s)	86
MnlI	CCTC	9 cut(s)	90, 108, 132, 192, 198, 266, 466, 1167, 1252
MseI	TTAA	7 cut(s)	12, 339, 797, 863, 984, 1100, 1226
MslI	CAYNNNNRTG	4 cut(s)	675, 849, 975, 1143
MspI	CCGG	3 cut(s)	159, 215, 841
MspR9I	CCNGG	1 cut(s)	150
Mva1269I	GAATGC	1 cut(s)	814
MvaI	CCWGG	1 cut(s)	150
MwoI	GCNNNNNNNGC	3 cut(s)	142, 440, 1070
NcoI	CCATGG	2 cut(s)	83, 1138
NdeII	GATC	5 cut(s)	280, 604, 651, 1078, 1269
NlaIII	CATG	9 cut(s)	87, 322, 591, 848, 885, 974, 1142, 1285, 1333
NlaIV	GGNNCC	1 cut(s)	399
NmeAIII	GCCGAG	2 cut(s)	18, 1373
NmuCI	GTSAC	4 cut(s)	197, 415, 904, 1207
NspI	RCATGY	2 cut(s)	591, 974
PcsI	WCGNNNNNNNCGW	4 cut(s)	97, 181, 321, 351
PctI	GAATGC	1 cut(s)	814
PfeI	GAWTC	2 cut(s)	646, 1192
PflFI	GACNNNGTC	1 cut(s)	910
PkrI	GCNGC	3 cut(s)	147, 169, 1372
PleI	GAGTC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	148
PspFI	CCCAGC	2 cut(s)	560, 1352
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	399
PspPI	GGNCC	1 cut(s)	156
PstI	CTGCAG	1 cut(s)	1375
PsuI	RGATCY	1 cut(s)	1269
PsyI	GACNNNGTC	1 cut(s)	910
RsaI	GTAC	2 cut(s)	802, 969
RsaNI	GTAC	2 cut(s)	801, 968
RseI	CAYNNNNRTG	4 cut(s)	675, 849, 975, 1143
Rsr2I	CGGWCCG	1 cut(s)	156
RsrII	CGGWCCG	1 cut(s)	156
SalI	GTCGAC	1 cut(s)	353
SaqAI	TTAA	7 cut(s)	12, 339, 797, 863, 984, 1100, 1226
SatI	GCNGC	3 cut(s)	146, 168, 1371
Sau3AI	GATC	5 cut(s)	280, 604, 651, 1078, 1269
Sau96I	GGNCC	1 cut(s)	156
ScaI	AGTACT	1 cut(s)	802
SchI	GAGTC	1 cut(s)	82
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	4 cut(s)	71, 351, 402, 1066
SfaNI	GCATC	5 cut(s)	495, 841, 1135, 1173, 1267
SfcI	CTRYAG	2 cut(s)	378, 1371
SinI	GGWCC	1 cut(s)	156
SmiMI	CAYNNNNRTG	4 cut(s)	675, 849, 975, 1143
SmlI	CTYRAG	1 cut(s)	723
SmoI	CTYRAG	1 cut(s)	723
Sse9I	AATT	7 cut(s)	232, 285, 406, 461, 532, 728, 991
SsiI	CCGC	6 cut(s)	106, 146, 179, 205, 268, 545
SspI	AATATT	2 cut(s)	933, 1006
StyD4I	CCNGG	1 cut(s)	148
StyI	CCWWGG	3 cut(s)	83, 855, 1138
TaaI	ACNGT	5 cut(s)	140, 415, 597, 904, 1222
TaiI	ACGT	3 cut(s)	61, 348, 354
TaqI	TCGA	6 cut(s)	91, 100, 279, 354, 599, 735
TaqII	GACCGA	1 cut(s)	144
TasI	AATT	7 cut(s)	232, 285, 406, 461, 532, 728, 991
TatI	WGTACW	2 cut(s)	800, 967
TauI	GCSGC	1 cut(s)	148
TfiI	GAWTC	2 cut(s)	646, 1192
Tru1I	TTAA	7 cut(s)	12, 339, 797, 863, 984, 1100, 1226
Tru9I	TTAA	7 cut(s)	12, 339, 797, 863, 984, 1100, 1226
TscAI	CASTG	2 cut(s)	138, 543
TseFI	GTSAC	4 cut(s)	197, 415, 904, 1207
TseI	GCWGC	2 cut(s)	167, 1370
Tsp45I	GTSAC	4 cut(s)	197, 415, 904, 1207
TspDTI	ATGAA	2 cut(s)	617, 861
TspGWI	ACGGA	2 cut(s)	185, 1296
TspRI	CASTG	2 cut(s)	138, 543
Tth111I	GACNNNGTC	1 cut(s)	910
VneI	GTGCAC	1 cut(s)	347
VpaK11BI	GGWCC	1 cut(s)	156
XapI	RAATTY	2 cut(s)	285, 532
XceI	RCATGY	2 cut(s)	591, 974
XmiI	GTMKAC	1 cut(s)	354
ZrmI	AGTACT	1 cut(s)	802

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.