Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0013262

Physical Location & Seq

Genomic Coordinates Reverse (-)

13159663 .. 13160596

Gene Structure 934 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10440.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGTTGTTAACAAAGCCAGTCCACATTCAAATCTCGGCCGCCAGCAACGGCTACGTCCAACGAGCCCTTCAAAACCTCCATGGACTCGACGGCCTCGACTGCAGAGCTTACGGCCACCTCATCCAGCACTGCACGGTCCGCCGCCTGGTCGGTCCGGCCAAGCAGCTCCACGCCCGCCTCGTCCTCTTCTCCGTCACCCCCGCCAACTTCCTGGCTTCAAAGCTCATCAATTTTTACTTCAAAACCAATAACCTCAACTATGCCCGCAAGGTGTTCGACCAAATTCCCCACCCAAACGCCTTCTCTTGGAACGCCATGCTCATTGGGTGTGTGTTGAAGGCTCTGGGCGCTTTGCTTTCGGGTTCAAAATTGGCTAAGGAGGTACATTGTTTTGTTCTGCGTCATGGTTTTGATTTGGATGTTTTTCTTGTTAATTCTGTGCTTACTTACTACTTGAGATGTGATGAGGTTGGTTTGGTGAGAGCTTTGTTTGATAGGATGCCAGAAAGAGATATTATGCCGTGGAATTCAATGATTGCGGGGTATTCTCAGGCCAGGTATTATGAGGAGTGTAAAGAGTTGAACAGGGAGATGTTAAGCTTAGGCAAGTTTAGGCCTGTTGGGTTGACAGTGGTTAGTGTCTTGCAGGCATGTTTACAGTCAAATGATCTTATGCTCGGTATGGAAGTTCATCAGTTTGTGAATGAGAATCAGATCGAGATGGATGTTTTGCTTTGTAATGCTCTTAGAGGGCTATACGCAAGATGTGGTAGCTTGGATTATGCTCAAGAATTATTCGATGAGATGAGTGAAAAGGATGAGGTCACTATGGCTCATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDP-OH_P_transf PPR PPR_2

Protein Analysis

280

Amino Acids

31.62

Weight (kDa)

7.12

Isoelectric Point (pI)

38.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37310
fragaria_vesca	FvH4_6g14880
malus_domestica	MD04G1110700.v1.1 MD12G1130100.v1.1 MD15G1361800.v1.1
pyrus_communis	pycom04g10440 pycom12g12620
rosa_chinensis	RchiOBHm_Chr3g0468091
rosa_laevigata	RLG00000024450
rosa_multiflora	Rmu_co8293603.1_g000001 Rmu_co8334519.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413060
rosa_rugosa	Rorug03G0092600
rosa_samantha	Rh3AG141000 Rh3BG162500 Rh3CG162300 Rh3DG163000
rosa_wichuraiana	Rw3G013320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	7 cut(s)	39, 139, 142, 175, 201, 265, 539
AcoI	YGGCCR	3 cut(s)	36, 112, 156
AcsI	RAATTY	2 cut(s)	282, 526
AfaI	GTAC	1 cut(s)	384
AfiI	CCNNNNNNNGG	2 cut(s)	145, 306
AgsI	TTSAA	8 cut(s)	29, 71, 219, 241, 337, 366, 531, 583
AjnI	CCWGG	3 cut(s)	144, 210, 554
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AluBI	AGCT	6 cut(s)	107, 166, 223, 485, 600, 774
AluI	AGCT	6 cut(s)	107, 166, 223, 485, 600, 774
AoxI	GGCC	6 cut(s)	36, 91, 112, 156, 552, 614
ApeKI	GCWGC	1 cut(s)	163
ApoI	RAATTY	2 cut(s)	282, 526
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	136, 152
AsuHPI	GGTGA	2 cut(s)	187, 490
AvaII	GGWCC	2 cut(s)	136, 152
BanII	GRGCYC	1 cut(s)	67
BbvI	GCAGC	1 cut(s)	175
BccI	CCATC	1 cut(s)	715
BceAI	ACGGC	4 cut(s)	64, 106, 127, 505
BcgI	CGANNNNNNTGC	2 cut(s)	256, 290
BciT130I	CCWGG	3 cut(s)	146, 212, 556
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	351
BisI	GCNGC	3 cut(s)	39, 142, 164
BlsI	GCNGC	3 cut(s)	40, 143, 165
Bme1390I	CCNGG	3 cut(s)	146, 212, 556
Bme18I	GGWCC	2 cut(s)	136, 152
BmgT120I	GGNCC	2 cut(s)	136, 152
BmrFI	CCNGG	3 cut(s)	146, 212, 556
BmsI	GCATC	1 cut(s)	489
Bpu10I	CCTNAGC	2 cut(s)	375, 601
BpuEI	CTTGAG	2 cut(s)	475, 771
BsaJI	CCNNGG	2 cut(s)	79, 521
Bsc4I	CCNNNNNNNGG	2 cut(s)	145, 306
Bse1I	ACTGG	1 cut(s)	17
BseBI	CCWGG	3 cut(s)	146, 212, 556
BseDI	CCNNGG	2 cut(s)	79, 521
BseGI	GGATG	5 cut(s)	120, 424, 504, 730, 823
BseLI	CCNNNNNNNGG	2 cut(s)	145, 306
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	1 cut(s)	17
BseRI	GAGGAG	1 cut(s)	581
BseX3I	CGGCCG	1 cut(s)	36
BseXI	GCAGC	1 cut(s)	175
BsgI	GTGCAG	1 cut(s)	115
Bsh1285I	CGRYCG	1 cut(s)	39
BshFI	GGCC	6 cut(s)	38, 93, 114, 158, 554, 616
BsiEI	CGRYCG	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	155
BslI	CCNNNNNNNGG	2 cut(s)	145, 306
BsnI	GGCC	6 cut(s)	38, 93, 114, 158, 554, 616
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	2 cut(s)	667, 714
Bsp19I	CCATGG	1 cut(s)	79
BspACI	CCGC	7 cut(s)	39, 139, 142, 175, 201, 265, 539
BspANI	GGCC	6 cut(s)	38, 93, 114, 158, 554, 616
BspCNI	CTCAG	1 cut(s)	562
BspMAI	CTGCAG	1 cut(s)	104
BsrI	ACTGG	1 cut(s)	17
BssECI	CCNNGG	2 cut(s)	79, 521
BssMI	GATC	2 cut(s)	667, 714
BssT1I	CCWWGG	1 cut(s)	79
Bst2UI	CCWGG	3 cut(s)	146, 212, 556
Bst4CI	ACNGT	3 cut(s)	136, 631, 660
Bst6I	CTCTTC	1 cut(s)	191
BstC8I	GCNNGC	4 cut(s)	43, 175, 265, 648
BstDEI	CTNAG	4 cut(s)	375, 549, 601, 746
BstDSI	CCRYGG	2 cut(s)	79, 521
BstF5I	GGATG	5 cut(s)	120, 424, 504, 730, 823
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	2 cut(s)	670, 717
BstMBI	GATC	2 cut(s)	667, 714
BstMCI	CGRYCG	1 cut(s)	39
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 138, 347
BstNI	CCWGG	3 cut(s)	146, 212, 556
BstNSI	RCATGY	1 cut(s)	654
BstSCI	CCNGG	3 cut(s)	144, 210, 554
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	175
BstXI	CCANNNNNNTGG	1 cut(s)	211
BstZI	CGGCCG	1 cut(s)	36
BsuRI	GGCC	6 cut(s)	38, 93, 114, 158, 554, 616
BtgI	CCRYGG	2 cut(s)	79, 521
BtsCI	GGATG	5 cut(s)	120, 424, 504, 730, 823
BtsI	GCAGTG	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	127, 636
Cac8I	GCNNGC	4 cut(s)	43, 175, 265, 648
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	136, 152
CpoI	CGGWCCG	2 cut(s)	136, 152
CseI	GACGC	1 cut(s)	389
Csp6I	GTAC	1 cut(s)	383
CspI	CGGWCCG	2 cut(s)	136, 152
CviAII	CATG	4 cut(s)	80, 316, 404, 651
CviQI	GTAC	1 cut(s)	383
DdeI	CTNAG	4 cut(s)	375, 549, 601, 746
DpnI	GATC	2 cut(s)	669, 716
DpnII	GATC	2 cut(s)	667, 714
EaeI	YGGCCR	3 cut(s)	36, 112, 156
EagI	CGGCCG	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
EciI	GGCGGA	1 cut(s)	128
EclXI	CGGCCG	1 cut(s)	36
Eco130I	CCWWGG	1 cut(s)	79
Eco147I	AGGCCT	1 cut(s)	616
Eco24I	GRGCYC	1 cut(s)	67
Eco47I	GGWCC	2 cut(s)	136, 152
Eco52I	CGGCCG	1 cut(s)	36
EcoRI	GAATTC	1 cut(s)	526
EcoRII	CCWGG	3 cut(s)	144, 210, 554
EcoT14I	CCWWGG	1 cut(s)	79
EcoT38I	GRGCYC	1 cut(s)	67
ErhI	CCWWGG	1 cut(s)	79
FaeI	CATG	4 cut(s)	83, 319, 407, 654
FatI	CATG	4 cut(s)	79, 315, 403, 650
FauI	CCCGC	4 cut(s)	182, 208, 272, 532
Fnu4HI	GCNGC	3 cut(s)	39, 142, 164
FokI	GGATG	5 cut(s)	107, 431, 511, 737, 830
FriOI	GRGCYC	1 cut(s)	67
Fsp4HI	GCNGC	3 cut(s)	39, 142, 164
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	3 cut(s)	39, 142, 164
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	6 cut(s)	38, 93, 114, 158, 554, 616
HapII	CCGG	1 cut(s)	155
HgaI	GACGC	1 cut(s)	389
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	4 cut(s)	83, 319, 407, 654
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	2 cut(s)	9, 627
HindII	GTYRAC	2 cut(s)	9, 627
HindIII	AAGCTT	1 cut(s)	598
HinfI	GANTC	2 cut(s)	84, 709
HpaI	GTTAAC	1 cut(s)	9
HpaII	CCGG	1 cut(s)	155
HphI	GGTGA	2 cut(s)	187, 490
Hpy166II	GTNNAC	4 cut(s)	9, 22, 627, 656
Hpy188I	TCNGA	1 cut(s)	714
Hpy188III	TCNNGA	2 cut(s)	718, 788
Hpy8I	GTNNAC	4 cut(s)	9, 22, 627, 656
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	77, 310, 331
HpyCH4III	ACNGT	3 cut(s)	136, 631, 660
HpyCH4IV	ACGT	1 cut(s)	54
HpyCH4V	TGCA	3 cut(s)	102, 132, 646
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 138, 347
HpyF3I	CTNAG	4 cut(s)	375, 549, 601, 746
HpySE526I	ACGT	1 cut(s)	54
Hsp92II	CATG	4 cut(s)	83, 319, 407, 654
HspAI	GCGC	1 cut(s)	348
KspAI	GTTAAC	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	667, 714
LmnI	GCTCC	1 cut(s)	171
Lsp1109I	GCAGC	1 cut(s)	175
LweI	GCATC	1 cut(s)	489
MaeII	ACGT	1 cut(s)	54
MaeIII	GTNAC	2 cut(s)	193, 823
MalI	GATC	2 cut(s)	669, 716
MboI	GATC	2 cut(s)	667, 714
MboII	GAAGA	1 cut(s)	178
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	6 cut(s)	229, 282, 368, 433, 526, 791
MlyI	GAGTC	1 cut(s)	78
MmeI	TCCRAC	1 cut(s)	82
MseI	TTAA	3 cut(s)	8, 432, 596
MspI	CCGG	1 cut(s)	155
MspR9I	CCNGG	3 cut(s)	146, 212, 556
MvaI	CCWGG	3 cut(s)	146, 212, 556
MwoI	GCNNNNNNNGC	3 cut(s)	99, 138, 347
NcoI	CCATGG	1 cut(s)	79
NdeII	GATC	2 cut(s)	667, 714
NlaIII	CATG	4 cut(s)	83, 319, 407, 654
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	2 cut(s)	193, 823
NspI	RCATGY	1 cut(s)	654
PceI	AGGCCT	1 cut(s)	616
PcsI	WCGNNNNNNNCGW	2 cut(s)	93, 177
PfeI	GAWTC	1 cut(s)	709
PkrI	GCNGC	3 cut(s)	40, 143, 165
PleI	GAGTC	1 cut(s)	78
PpsI	GAGTC	1 cut(s)	78
Psp6I	CCWGG	3 cut(s)	144, 210, 554
PspGI	CCWGG	3 cut(s)	144, 210, 554
PspPI	GGNCC	2 cut(s)	136, 152
PstI	CTGCAG	1 cut(s)	104
RsaI	GTAC	1 cut(s)	384
RsaNI	GTAC	1 cut(s)	383
Rsr2I	CGGWCCG	2 cut(s)	136, 152
RsrII	CGGWCCG	2 cut(s)	136, 152
SaqAI	TTAA	3 cut(s)	8, 432, 596
SatI	GCNGC	3 cut(s)	39, 142, 164
Sau3AI	GATC	2 cut(s)	667, 714
Sau96I	GGNCC	2 cut(s)	136, 152
SchI	GAGTC	1 cut(s)	78
ScrFI	CCNGG	3 cut(s)	146, 212, 556
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	489
SfcI	CTRYAG	1 cut(s)	100
SinI	GGWCC	2 cut(s)	136, 152
SmlI	CTYRAG	2 cut(s)	454, 786
SmoI	CTYRAG	2 cut(s)	454, 786
Sse9I	AATT	6 cut(s)	229, 282, 368, 433, 526, 791
SseBI	AGGCCT	1 cut(s)	616
SsiI	CCGC	7 cut(s)	39, 139, 142, 175, 201, 265, 539
StuI	AGGCCT	1 cut(s)	616
StyD4I	CCNGG	3 cut(s)	144, 210, 554
StyI	CCWWGG	1 cut(s)	79
TaaI	ACNGT	3 cut(s)	136, 631, 660
TaiI	ACGT	1 cut(s)	57
TaqI	TCGA	5 cut(s)	87, 96, 276, 717, 798
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	6 cut(s)	229, 282, 368, 433, 526, 791
TauI	GCSGC	2 cut(s)	41, 144
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	3 cut(s)	8, 432, 596
Tru9I	TTAA	3 cut(s)	8, 432, 596
TscAI	CASTG	2 cut(s)	134, 636
TseFI	GTSAC	2 cut(s)	193, 823
TseI	GCWGC	1 cut(s)	163
Tsp45I	GTSAC	2 cut(s)	193, 823
TspDTI	ATGAA	1 cut(s)	680
TspGWI	ACGGA	1 cut(s)	181
TspRI	CASTG	2 cut(s)	134, 636
VpaK11BI	GGWCC	2 cut(s)	136, 152
XapI	RAATTY	2 cut(s)	282, 526
XceI	RCATGY	1 cut(s)	654

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.