Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8334519.1

Orthogroup ID

OG0013262

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 986

Gene Structure 986 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8334519.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 986 bp

tcttctccgtcaagcccggcaacttcctcgcctcaaaactcatcaacttctactctagagccaaccagctcaaacaagcccacaaggtgttcgacgaaattccccaaaagaacactttcgcttggaacgccctgctcattgggtactccatccgcaacatgcataccgatactctgagggtgttttcggccatggtggagtcgggatcgccggaagtgaagccggataatttcactataacgtgtgtgatgaaggcgctggggggtttgttttccggttcggatttggctaaggaggtgcattgctttgttctgcgaaatgggttcgattcggatgtgtttgttgctaattgtttgatgactttctactcgagatgtgatgaggttgggatggccaggagtttgtttgatagaatgccggggaaagatatcgtgtcctggaattcgatgattgctgggtattctcaggctgggtattatggagagtgtaaggagttgtatagggagatggtggagtctgtggagttgaggcctgatgatgtgactgcagttagtgtgttgcaggcatgtgtacagtccagtgatcttaaatttggtatggaggttcatcagtttttgaatgagagtcacattgagatgaatgtcatgctttacaatgctcttatagggttatatgcaagatgtggtaagttggattgtgctcaggaattgtttgatggaatgagtgagaaggatgatgttacatatggctcattagtttccgggtacatgtttcacggatttgttgataaagccatggatattttccgagaatgtaccaaccgaagcttaagtacttggaatgctatgatttcgggtctggttcagaacaatcggcatgaggctgccatagaattagttcgtgaaatgcaggcatgtggtttcaaaccaaataccgtgacattgtcaagtgttcttcctgcaatttcatatttctcaaatttaaaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDP-OH_P_transf PPR PPR_2

Protein Analysis

328

Amino Acids

36.79

Weight (kDa)

5.56

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37310
fragaria_vesca	FvH4_6g14880
malus_domestica	MD04G1110700.v1.1 MD12G1130100.v1.1 MD15G1361800.v1.1
pyrus_communis	pycom04g10440 pycom12g12620
rosa_chinensis	RchiOBHm_Chr3g0468091
rosa_laevigata	RLG00000024450
rosa_multiflora	Rmu_co8293603.1_g000001 Rmu_co8334519.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413060
rosa_rugosa	Rorug03G0092600
rosa_samantha	Rh3AG141000 Rh3BG162500 Rh3CG162300 Rh3DG163000
rosa_wichuraiana	Rw3G013320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	153
AclWI	GGATC	1 cut(s)	213
AcoI	YGGCCR	2 cut(s)	188, 392
AcsI	RAATTY	4 cut(s)	98, 441, 589, 978
AdeI	CACNNNGTG	1 cut(s)	87
AfaI	GTAC	5 cut(s)	145, 572, 766, 816, 834
AflII	CTTAAG	1 cut(s)	828
AflIII	ACRYGT	2 cut(s)	241, 767
AgsI	TTSAA	2 cut(s)	618, 924
AjnI	CCWGG	2 cut(s)	394, 436
AluBI	AGCT	2 cut(s)	69, 827
AluI	AGCT	2 cut(s)	69, 827
Alw21I	GWGCWC	1 cut(s)	702
AlwI	GGATC	1 cut(s)	213
Ama87I	CYCGRG	1 cut(s)	369
AoxI	GGCC	3 cut(s)	188, 392, 529
ApeKI	GCWGC	1 cut(s)	883
ApoI	RAATTY	4 cut(s)	98, 441, 589, 978
Asp700I	GAANNNNTTC	2 cut(s)	115, 896
AspLEI	GCGC	1 cut(s)	258
AsuC2I	CCSGG	3 cut(s)	17, 419, 762
AvaI	CYCGRG	1 cut(s)	369
BalI	TGGCCA	1 cut(s)	394
BarI	GAAGNNNNNNTAC	2 cut(s)	816, 848
Bbv12I	GWGCWC	1 cut(s)	702
BbvI	GCAGC	1 cut(s)	870
BccI	CCATC	4 cut(s)	157, 384, 501, 709
BcgI	CGANNNNNNTGC	2 cut(s)	9, 43
BciT130I	CCWGG	2 cut(s)	396, 438
BcnI	CCSGG	3 cut(s)	17, 419, 762
BfaI	CTAG	1 cut(s)	56
BfmI	CTRYAG	1 cut(s)	545
BfoI	RGCGCY	1 cut(s)	259
BfrI	CTTAAG	1 cut(s)	828
BisI	GCNGC	1 cut(s)	884
BlsI	GCNGC	1 cut(s)	885
BmcAI	AGTACT	1 cut(s)	834
Bme1390I	CCNGG	5 cut(s)	17, 396, 419, 438, 762
BmeT110I	CYCGRG	1 cut(s)	369
BmrFI	CCNGG	5 cut(s)	17, 396, 419, 438, 762
Bpu10I	CCTNAGC	2 cut(s)	290, 701
BpuMI	CCSGG	3 cut(s)	17, 419, 762
BsaJI	CCNNGG	3 cut(s)	191, 418, 794
BsaWI	WCCGGW	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	578
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	2 cut(s)	396, 438
BseDI	CCNNGG	3 cut(s)	191, 418, 794
BseGI	GGATG	4 cut(s)	149, 339, 395, 738
BseMI	GCAATG	1 cut(s)	300
BseMII	CTCAG	3 cut(s)	166, 478, 715
BseNI	ACTGG	1 cut(s)	578
BseXI	GCAGC	1 cut(s)	870
BseYI	CCCAGC	3 cut(s)	258, 454, 469
BshFI	GGCC	3 cut(s)	190, 394, 531
BsiHKAI	GWGCWC	1 cut(s)	702
BsiHKCI	CYCGRG	1 cut(s)	369
BsiSI	CCGG	6 cut(s)	17, 211, 223, 275, 418, 761
BsmI	GAATGC	2 cut(s)	419, 846
BsnI	GGCC	3 cut(s)	190, 394, 531
BsoBI	CYCGRG	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	702
Bsp1407I	TGTACA	1 cut(s)	570
Bsp143I	GATC	2 cut(s)	205, 582
Bsp19I	CCATGG	2 cut(s)	191, 794
BspACI	CCGC	1 cut(s)	153
BspANI	GGCC	3 cut(s)	190, 394, 531
BspCNI	CTCAG	3 cut(s)	167, 477, 714
BspMAI	CTGCAG	1 cut(s)	549
BspPI	GGATC	1 cut(s)	213
BspTI	CTTAAG	1 cut(s)	828
BsrDI	GCAATG	1 cut(s)	300
BsrGI	TGTACA	1 cut(s)	570
BsrI	ACTGG	1 cut(s)	578
BssECI	CCNNGG	3 cut(s)	191, 418, 794
BssMI	GATC	2 cut(s)	205, 582
BssT1I	CCWWGG	2 cut(s)	191, 794
Bst2UI	CCWGG	2 cut(s)	396, 438
Bst4CI	ACNGT	2 cut(s)	575, 936
BstAFI	CTTAAG	1 cut(s)	828
BstAUI	TGTACA	1 cut(s)	570
BstC8I	GCNNGC	2 cut(s)	563, 911
BstDEI	CTNAG	4 cut(s)	175, 290, 464, 701
BstDSI	CCRYGG	2 cut(s)	191, 794
BstF5I	GGATG	4 cut(s)	149, 339, 395, 738
BstH2I	RGCGCY	1 cut(s)	259
BstHHI	GCGC	1 cut(s)	258
BstKTI	GATC	2 cut(s)	208, 585
BstMBI	GATC	2 cut(s)	205, 582
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstNI	CCWGG	2 cut(s)	396, 438
BstNSI	RCATGY	4 cut(s)	162, 569, 771, 917
BstSCI	CCNGG	5 cut(s)	15, 394, 417, 436, 760
BstSFI	CTRYAG	1 cut(s)	545
BstV1I	GCAGC	1 cut(s)	870
BsuRI	GGCC	3 cut(s)	190, 394, 531
BtgI	CCRYGG	2 cut(s)	191, 794
BtsCI	GGATG	4 cut(s)	149, 339, 395, 738
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	2 cut(s)	563, 911
CfoI	GCGC	1 cut(s)	258
Csp6I	GTAC	5 cut(s)	144, 571, 765, 815, 833
CviAII	CATG	8 cut(s)	159, 192, 566, 645, 768, 795, 877, 914
CviQI	GTAC	5 cut(s)	144, 571, 765, 815, 833
DdeI	CTNAG	4 cut(s)	175, 290, 464, 701
DpnI	GATC	2 cut(s)	207, 584
DpnII	GATC	2 cut(s)	205, 582
DraI	TTTAAA	1 cut(s)	983
DraIII	CACNNNGTG	1 cut(s)	87
EaeI	YGGCCR	2 cut(s)	188, 392
Eco130I	CCWWGG	2 cut(s)	191, 794
Eco147I	AGGCCT	1 cut(s)	531
Eco32I	GATATC	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	369
EcoRI	GAATTC	1 cut(s)	441
EcoRII	CCWGG	2 cut(s)	394, 436
EcoRV	GATATC	1 cut(s)	429
EcoT14I	CCWWGG	2 cut(s)	191, 794
EcoT22I	ATGCAT	1 cut(s)	164
ErhI	CCWWGG	2 cut(s)	191, 794
FaeI	CATG	8 cut(s)	162, 195, 569, 648, 771, 798, 880, 917
FatI	CATG	8 cut(s)	158, 191, 565, 644, 767, 794, 876, 913
FauNDI	CATATG	1 cut(s)	744
Fnu4HI	GCNGC	1 cut(s)	884
FokI	GGATG	4 cut(s)	136, 346, 402, 745
Fsp4HI	GCNGC	1 cut(s)	884
FspBI	CTAG	1 cut(s)	56
GlaI	GCGC	1 cut(s)	257
GluI	GCNGC	1 cut(s)	884
GsaI	CCCAGC	3 cut(s)	262, 458, 473
HaeII	RGCGCY	1 cut(s)	259
HaeIII	GGCC	3 cut(s)	190, 394, 531
HapII	CCGG	6 cut(s)	17, 211, 223, 275, 418, 761
HhaI	GCGC	1 cut(s)	258
Hin1II	CATG	8 cut(s)	162, 195, 569, 648, 771, 798, 880, 917
Hin6I	GCGC	1 cut(s)	256
HinP1I	GCGC	1 cut(s)	256
HindIII	AAGCTT	1 cut(s)	825
HinfI	GANTC	4 cut(s)	199, 328, 514, 624
HpaII	CCGG	6 cut(s)	17, 211, 223, 275, 418, 761
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	5 cut(s)	176, 282, 333, 808, 866
Hpy188III	TCNNGA	5 cut(s)	56, 203, 371, 703, 901
Hpy8I	GTNNAC	1 cut(s)	571
Hpy99I	CGWCG	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	246, 723
HpyCH4III	ACNGT	2 cut(s)	575, 936
HpyCH4IV	ACGT	1 cut(s)	241
HpyCH4V	TGCA	7 cut(s)	162, 300, 547, 561, 676, 909, 961
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	4 cut(s)	175, 290, 464, 701
HpySE526I	ACGT	1 cut(s)	241
Hsp92II	CATG	8 cut(s)	162, 195, 569, 648, 771, 798, 880, 917
HspAI	GCGC	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	205, 582
Lsp1109I	GCAGC	1 cut(s)	870
MaeI	CTAG	1 cut(s)	56
MaeII	ACGT	1 cut(s)	241
MaeIII	GTNAC	4 cut(s)	540, 625, 738, 936
MalI	GATC	2 cut(s)	207, 584
MboI	GATC	2 cut(s)	205, 582
MboII	GAAGA	1 cut(s)	946
MhlI	GDGCHC	1 cut(s)	702
MlsI	TGGCCA	1 cut(s)	394
MluCI	AATT	9 cut(s)	98, 228, 348, 441, 589, 706, 892, 962, 978
MluNI	TGGCCA	1 cut(s)	394
MlyI	GAGTC	3 cut(s)	208, 523, 633
MmeI	TCCRAC	1 cut(s)	671
MnlI	CCTC	8 cut(s)	37, 42, 170, 288, 375, 521, 594, 873
Mox20I	TGGCCA	1 cut(s)	394
Mph1103I	ATGCAT	1 cut(s)	164
MroXI	GAANNNNTTC	2 cut(s)	115, 896
MscI	TGGCCA	1 cut(s)	394
MseI	TTAA	3 cut(s)	587, 829, 982
MslI	CAYNNNNRTG	1 cut(s)	634
Msp20I	TGGCCA	1 cut(s)	394
MspCI	CTTAAG	1 cut(s)	828
MspI	CCGG	6 cut(s)	17, 211, 223, 275, 418, 761
MspR9I	CCNGG	5 cut(s)	17, 396, 419, 438, 762
Mva1269I	GAATGC	2 cut(s)	419, 846
MvaI	CCWGG	2 cut(s)	396, 438
MwoI	GCNNNNNNNGC	1 cut(s)	127
NciI	CCSGG	3 cut(s)	17, 419, 762
NcoI	CCATGG	2 cut(s)	191, 794
NdeI	CATATG	1 cut(s)	744
NdeII	GATC	2 cut(s)	205, 582
NlaIII	CATG	8 cut(s)	162, 195, 569, 648, 771, 798, 880, 917
NmuCI	GTSAC	3 cut(s)	540, 625, 936
NsiI	ATGCAT	1 cut(s)	164
NspI	RCATGY	4 cut(s)	162, 569, 771, 917
PaeR7I	CTCGAG	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	531
PciI	ACATGT	1 cut(s)	767
PctI	GAATGC	2 cut(s)	419, 846
PdmI	GAANNNNTTC	2 cut(s)	115, 896
PfeI	GAWTC	1 cut(s)	328
PflFI	GACNNNGTC	1 cut(s)	942
PfoI	TCCNGGA	1 cut(s)	436
PkrI	GCNGC	1 cut(s)	885
PleI	GAGTC	3 cut(s)	207, 522, 632
PpsI	GAGTC	3 cut(s)	207, 522, 632
PscI	ACATGT	1 cut(s)	767
Psp6I	CCWGG	2 cut(s)	394, 436
PspFI	CCCAGC	3 cut(s)	258, 454, 469
PspGI	CCWGG	2 cut(s)	394, 436
PstI	CTGCAG	1 cut(s)	549
PsyI	GACNNNGTC	1 cut(s)	942
RsaI	GTAC	5 cut(s)	145, 572, 766, 816, 834
RsaNI	GTAC	5 cut(s)	144, 571, 765, 815, 833
RseI	CAYNNNNRTG	1 cut(s)	634
SaqAI	TTAA	3 cut(s)	587, 829, 982
SatI	GCNGC	1 cut(s)	884
Sau3AI	GATC	2 cut(s)	205, 582
ScaI	AGTACT	1 cut(s)	834
SchI	GAGTC	3 cut(s)	208, 523, 633
ScrFI	CCNGG	5 cut(s)	17, 396, 419, 438, 762
SduI	GDGCHC	1 cut(s)	702
SetI	ASST	7 cut(s)	71, 89, 244, 299, 386, 605, 829
SfcI	CTRYAG	1 cut(s)	545
Sfr274I	CTCGAG	1 cut(s)	369
SlaI	CTCGAG	1 cut(s)	369
SmiMI	CAYNNNNRTG	1 cut(s)	634
SmlI	CTYRAG	2 cut(s)	369, 828
SmoI	CTYRAG	2 cut(s)	369, 828
Sse9I	AATT	9 cut(s)	98, 228, 348, 441, 589, 706, 892, 962, 978
SseBI	AGGCCT	1 cut(s)	531
SsiI	CCGC	1 cut(s)	153
SspMI	CTAG	1 cut(s)	56
StuI	AGGCCT	1 cut(s)	531
StyD4I	CCNGG	5 cut(s)	15, 394, 417, 436, 760
StyI	CCWWGG	2 cut(s)	191, 794
TaaI	ACNGT	2 cut(s)	575, 936
TaiI	ACGT	1 cut(s)	244
TaqI	TCGA	4 cut(s)	92, 326, 370, 445
TasI	AATT	9 cut(s)	98, 228, 348, 441, 589, 706, 892, 962, 978
TatI	WGTACW	2 cut(s)	570, 832
TfiI	GAWTC	1 cut(s)	328
Tru1I	TTAA	3 cut(s)	587, 829, 982
Tru9I	TTAA	3 cut(s)	587, 829, 982
TscAI	CASTG	1 cut(s)	585
TseFI	GTSAC	3 cut(s)	540, 625, 936
TseI	GCWGC	1 cut(s)	883
Tsp45I	GTSAC	3 cut(s)	540, 625, 936
TspDTI	ATGAA	4 cut(s)	265, 595, 652, 956
TspGWI	ACGGA	1 cut(s)	791
TspRI	CASTG	1 cut(s)	585
Tth111I	GACNNNGTC	1 cut(s)	942
Vha464I	CTTAAG	1 cut(s)	828
XapI	RAATTY	4 cut(s)	98, 441, 589, 978
XbaI	TCTAGA	1 cut(s)	55
XceI	RCATGY	4 cut(s)	162, 569, 771, 917
XhoI	CTCGAG	1 cut(s)	369
XmnI	GAANNNNTTC	2 cut(s)	115, 896
XspI	CTAG	1 cut(s)	56
ZrmI	AGTACT	1 cut(s)	834
Zsp2I	ATGCAT	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.