Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8293603.1

Orthogroup ID

OG0013262

Physical Location & Seq

Genomic Coordinates Reverse (-)

74 .. 685

Gene Structure 612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8293603.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

atgcttagtactgggatacagccagatgaagtaacgtttacagcagtattaacagcttgttctcattctggagtggtggatgaagcttggaaaatctttaaggccatgtttccggtatatggtattcacccttcggttgagcactatgcatgcatggttggtgttcttagccgggcagggagactcactgaagctgcagagttaatacaaaacatgtcaatcgagccaagtgctaaagtttggggtgcattacttaatggggcttcagttgctcgtaatgttgaactgggaaagtttgtttgtgaccgtctatttcagatggagcctgagaataccgggaactatatcattatggcaaatttatattcacaagctgggagatgggaagaagctgataaggtcagggaaagaatgaaagaagttggattacagaaaattcctggtattagctggattgaaacaattgatggattgcacagcttcatagcaagggatgcatctaatgtaagaactgaagcgatttatgaaatacttgaaggattgctaggattgatgaaagagaaagggtatgttttgcaggatgaattagatgaggagagtgtcaatggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDP-OH_P_transf PPR PPR_2

Protein Analysis

203

Amino Acids

22.48

Weight (kDa)

4.84

Isoelectric Point (pI)

38.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37310
fragaria_vesca	FvH4_6g14880
malus_domestica	MD04G1110700.v1.1 MD12G1130100.v1.1 MD15G1361800.v1.1
pyrus_communis	pycom04g10440 pycom12g12620
rosa_chinensis	RchiOBHm_Chr3g0468091
rosa_laevigata	RLG00000024450
rosa_multiflora	Rmu_co8293603.1_g000001 Rmu_co8334519.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413060
rosa_rugosa	Rorug03G0092600
rosa_samantha	Rh3AG141000 Rh3BG162500 Rh3CG162300 Rh3DG163000
rosa_wichuraiana	Rw3G013320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclI	AACGTT	1 cut(s)	35
AcsI	RAATTY	2 cut(s)	358, 435
AcuI	CTGAAG	3 cut(s)	210, 249, 534
AfaI	GTAC	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	119
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	3 cut(s)	284, 458, 536
AjnI	CCWGG	1 cut(s)	439
AluBI	AGCT	7 cut(s)	56, 86, 194, 374, 392, 450, 480
AluI	AGCT	7 cut(s)	56, 86, 194, 374, 392, 450, 480
Alw21I	GWGCWC	1 cut(s)	144
Alw26I	GTCTC	1 cut(s)	175
AoxI	GGCC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	194
ApoI	RAATTY	2 cut(s)	358, 435
AsuC2I	CCSGG	2 cut(s)	173, 337
AsuHPI	GGTGA	1 cut(s)	119
BarI	GAAGNNNNNNTAC	4 cut(s)	115, 147, 411, 443
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	181
BccI	CCATC	3 cut(s)	313, 375, 461
BcgI	CGANNNNNNTGC	2 cut(s)	212, 246
BciT130I	CCWGG	1 cut(s)	441
BciVI	GTATCC	1 cut(s)	9
BcnI	CCSGG	2 cut(s)	173, 337
BcoDI	GTCTC	1 cut(s)	175
BfaI	CTAG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	195
BfuI	GTATCC	1 cut(s)	9
BisI	GCNGC	1 cut(s)	195
BlsI	GCNGC	1 cut(s)	196
BmcAI	AGTACT	1 cut(s)	10
Bme1390I	CCNGG	3 cut(s)	173, 337, 441
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	3 cut(s)	173, 337, 441
BmrI	ACTGGG	2 cut(s)	21, 296
BmsI	GCATC	2 cut(s)	484, 506
BmuI	ACTGGG	2 cut(s)	21, 296
BpmI	CTGGAG	1 cut(s)	90
BpuMI	CCSGG	2 cut(s)	173, 337
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse1I	ACTGG	2 cut(s)	16, 291
BseBI	CCWGG	1 cut(s)	441
BseGI	GGATG	3 cut(s)	85, 499, 586
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	1 cut(s)	318
BseNI	ACTGG	2 cut(s)	16, 291
BseRI	GAGGAG	1 cut(s)	608
BseXI	GCAGC	1 cut(s)	181
BseYI	CCCAGC	1 cut(s)	374
BshFI	GGCC	1 cut(s)	104
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	3 cut(s)	113, 172, 336
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	175
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	144
BspANI	GGCC	1 cut(s)	104
BspCNI	CTCAG	1 cut(s)	319
BspLI	GGNNCC	1 cut(s)	324
BspMAI	CTGCAG	1 cut(s)	199
BsrI	ACTGG	2 cut(s)	16, 291
Bst2UI	CCWGG	1 cut(s)	441
Bst4CI	ACNGT	1 cut(s)	308
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	151
BstDEI	CTNAG	3 cut(s)	5, 167, 327
BstF5I	GGATG	3 cut(s)	85, 499, 586
BstMAI	GTCTC	1 cut(s)	175
BstMWI	GCNNNNNNNGC	2 cut(s)	269, 494
BstNI	CCWGG	1 cut(s)	441
BstNSI	RCATGY	2 cut(s)	153, 217
BstSCI	CCNGG	3 cut(s)	171, 335, 439
BstSFI	CTRYAG	1 cut(s)	195
BstV1I	GCAGC	1 cut(s)	181
BsuI	GTATCC	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	104
BtsCI	GGATG	3 cut(s)	85, 499, 586
BtsIMutI	CAGTG	1 cut(s)	186
Cac8I	GCNNGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	9
CviAII	CATG	4 cut(s)	106, 150, 154, 214
CviQI	GTAC	1 cut(s)	9
DdeI	CTNAG	3 cut(s)	5, 167, 327
Eco57I	CTGAAG	3 cut(s)	210, 249, 534
EcoRII	CCWGG	1 cut(s)	439
EcoT22I	ATGCAT	3 cut(s)	151, 155, 499
FaeI	CATG	4 cut(s)	109, 153, 157, 217
FatI	CATG	4 cut(s)	105, 149, 153, 213
Fnu4HI	GCNGC	1 cut(s)	195
FokI	GGATG	3 cut(s)	92, 506, 593
Fsp4HI	GCNGC	1 cut(s)	195
FspBI	CTAG	1 cut(s)	545
GluI	GCNGC	1 cut(s)	195
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	90
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	3 cut(s)	113, 172, 336
Hin1II	CATG	4 cut(s)	109, 153, 157, 217
HindIII	AAGCTT	1 cut(s)	84
HinfI	GANTC	1 cut(s)	183
HpaII	CCGG	3 cut(s)	113, 172, 336
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	39
Hpy188I	TCNGA	1 cut(s)	318
Hpy188III	TCNNGA	1 cut(s)	69
Hpy8I	GTNNAC	1 cut(s)	39
HpyAV	CCTTC	2 cut(s)	141, 530
HpyCH4III	ACNGT	1 cut(s)	308
HpyCH4IV	ACGT	1 cut(s)	35
HpyCH4V	TGCA	7 cut(s)	149, 153, 197, 248, 475, 497, 577
HpyF10VI	GCNNNNNNNGC	2 cut(s)	269, 494
HpyF3I	CTNAG	3 cut(s)	5, 167, 327
HpySE526I	ACGT	1 cut(s)	35
Hsp92II	CATG	4 cut(s)	109, 153, 157, 217
LmnI	GCTCC	1 cut(s)	322
Lsp1109I	GCAGC	1 cut(s)	181
LweI	GCATC	2 cut(s)	484, 506
MaeI	CTAG	1 cut(s)	545
MaeII	ACGT	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	31, 302
MboII	GAAGA	1 cut(s)	398
MfeI	CAATTG	1 cut(s)	462
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	4 cut(s)	358, 435, 462, 584
MlyI	GAGTC	1 cut(s)	177
MmeI	TCCRAC	1 cut(s)	403
MnlI	CCTC	1 cut(s)	586
Mph1103I	ATGCAT	3 cut(s)	151, 155, 499
MseI	TTAA	4 cut(s)	50, 99, 203, 255
MspI	CCGG	3 cut(s)	113, 172, 336
MspR9I	CCNGG	3 cut(s)	173, 337, 441
MunI	CAATTG	1 cut(s)	462
MvaI	CCWGG	1 cut(s)	441
MwoI	GCNNNNNNNGC	2 cut(s)	269, 494
NciI	CCSGG	2 cut(s)	173, 337
NlaIII	CATG	4 cut(s)	109, 153, 157, 217
NlaIV	GGNNCC	1 cut(s)	324
NmuCI	GTSAC	1 cut(s)	302
NsiI	ATGCAT	3 cut(s)	151, 155, 499
NspI	RCATGY	2 cut(s)	153, 217
PaeI	GCATGC	1 cut(s)	153
PciI	ACATGT	1 cut(s)	213
PkrI	GCNGC	1 cut(s)	196
PleI	GAGTC	1 cut(s)	177
PpsI	GAGTC	1 cut(s)	177
PscI	ACATGT	1 cut(s)	213
Psp1406I	AACGTT	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	439
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	439
PspN4I	GGNNCC	1 cut(s)	324
PstI	CTGCAG	1 cut(s)	199
RsaI	GTAC	1 cut(s)	10
RsaNI	GTAC	1 cut(s)	9
SaqAI	TTAA	4 cut(s)	50, 99, 203, 255
SatI	GCNGC	1 cut(s)	195
ScaI	AGTACT	1 cut(s)	10
SchI	GAGTC	1 cut(s)	177
ScrFI	CCNGG	3 cut(s)	173, 337, 441
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	9 cut(s)	38, 58, 88, 196, 376, 394, 402, 452, 482
SfaNI	GCATC	2 cut(s)	484, 506
SfcI	CTRYAG	1 cut(s)	195
SphI	GCATGC	1 cut(s)	153
Sse9I	AATT	4 cut(s)	358, 435, 462, 584
SspMI	CTAG	1 cut(s)	545
StyD4I	CCNGG	3 cut(s)	171, 335, 439
TaaI	ACNGT	1 cut(s)	308
TaiI	ACGT	1 cut(s)	38
TaqI	TCGA	1 cut(s)	222
TasI	AATT	4 cut(s)	358, 435, 462, 584
TatI	WGTACW	1 cut(s)	8
Tru1I	TTAA	4 cut(s)	50, 99, 203, 255
Tru9I	TTAA	4 cut(s)	50, 99, 203, 255
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	302
TseI	GCWGC	1 cut(s)	194
Tsp45I	GTSAC	1 cut(s)	302
TspDTI	ATGAA	7 cut(s)	42, 96, 428, 472, 540, 569, 597
TspRI	CASTG	1 cut(s)	193
XapI	RAATTY	2 cut(s)	358, 435
XceI	RCATGY	2 cut(s)	153, 217
XspI	CTAG	1 cut(s)	545
ZrmI	AGTACT	1 cut(s)	10
Zsp2I	ATGCAT	3 cut(s)	151, 155, 499

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.