Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0013262

Physical Location & Seq

Genomic Coordinates Forward (+)

43614418 .. 43615420

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1361800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAATGTTCTCCAACGAGCCCTTCAAAATCTCCATGGACTCGACGGGCTCGACTGCAGAGCTTATGGCCACCTCATCCAGCAATGTACGGTACGCTGCCTGGTTGGTCCGGCCAAGCAGCTCCACGTCCGCCTTGTCCTCTTCTCTGTCACACCCGGCAACTTCCTGGCCTCAAAGCTCATCAATTTCCACTCCAAAACCAGTAACCTCAACCATGCCCGCAAGGAGTTAGACCAAATTCCCCACCGAAACGCCTTCTCTTGGAACGCCATGCTCATTGCGTTCCCGAAGTTTACCGTGACGTGTGTGTTGAAGGCTCTGGGCGCTTTGCTTCCGGGTTCAAAATTGGCTAAGGAGGTTCATTGTTTTGTTCTGCGTCTTGGGTTTGATTCGGATGTTTTTGTTGTTAATTCTTTAATTACTTACTACTCGAGATGTGATGAGTCAAATGACCTTATGCTCGGTATGGAAGTTCATCAGTTTCTGAATGAGAATCAGATCGAGACGGATGTTTTTCTTTGTAATACAAGATGTGGTAGCTTGGATTATGCTCAAGAATTATGCGGTGAGATGAGTGAAAAGGATGAGGTCACTTATGGCTCATTAGTTTCGGGTACATGTTTCACGGGTTTGTTGACAAAGCCGTGGATGTTCTTCGAGACAATAAGAAGCCGAAGTTATGTACTTTGGAATGCTGTGATTTATGTCCGATTCAGAATAACCGGCATGAAGAAGCCTTGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDP-OH_P_transf PPR PPR_2

Protein Analysis

249

Amino Acids

28.17

Weight (kDa)

8.51

Isoelectric Point (pI)

28.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37310
fragaria_vesca	FvH4_6g14880
malus_domestica	MD04G1110700.v1.1 MD12G1130100.v1.1 MD15G1361800.v1.1
pyrus_communis	pycom04g10440 pycom12g12620
rosa_chinensis	RchiOBHm_Chr3g0468091
rosa_laevigata	RLG00000024450
rosa_multiflora	Rmu_co8293603.1_g000001 Rmu_co8334519.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413060
rosa_rugosa	Rorug03G0092600
rosa_samantha	Rh3AG141000 Rh3BG162500 Rh3CG162300 Rh3DG163000
rosa_wichuraiana	Rw3G013320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	130, 220, 564
AcoI	YGGCCR	2 cut(s)	67, 111
AcsI	RAATTY	1 cut(s)	237
AfaI	GTAC	4 cut(s)	88, 93, 616, 684
AfiI	CCNNNNNNNGG	1 cut(s)	261
AflIII	ACRYGT	2 cut(s)	302, 617
AgsI	TTSAA	3 cut(s)	26, 313, 342
AjiI	CACGTC	2 cut(s)	127, 303
AjnI	CCWGG	2 cut(s)	99, 165
AjuI	GAANNNNNNNTTGG	1 cut(s)	38
AluBI	AGCT	4 cut(s)	62, 121, 178, 540
AluI	AGCT	4 cut(s)	62, 121, 178, 540
Alw26I	GTCTC	2 cut(s)	497, 653
AlwNI	CAGNNNCTG	1 cut(s)	484
Ama87I	CYCGRG	1 cut(s)	430
AoxI	GGCC	3 cut(s)	67, 111, 168
ApeKI	GCWGC	2 cut(s)	96, 118
ApoI	RAATTY	1 cut(s)	237
AspLEI	GCGC	1 cut(s)	326
AspS9I	GGNCC	1 cut(s)	107
AsuC2I	CCSGG	2 cut(s)	156, 336
AsuHPI	GGTGA	1 cut(s)	578
AvaI	CYCGRG	1 cut(s)	430
AvaII	GGWCC	1 cut(s)	107
BalI	TGGCCA	1 cut(s)	69
BanII	GRGCYC	2 cut(s)	22, 51
BbvI	GCAGC	2 cut(s)	83, 130
BceAI	ACGGC	1 cut(s)	628
BciT130I	CCWGG	2 cut(s)	101, 167
BcnI	CCSGG	2 cut(s)	156, 336
BcoDI	GTCTC	2 cut(s)	497, 653
BfmI	CTRYAG	1 cut(s)	55
BfoI	RGCGCY	1 cut(s)	327
BisI	GCNGC	2 cut(s)	97, 119
BlsI	GCNGC	2 cut(s)	98, 120
Bme1390I	CCNGG	4 cut(s)	101, 156, 167, 336
Bme18I	GGWCC	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	430
BmgBI	CACGTC	2 cut(s)	127, 303
BmgT120I	GGNCC	1 cut(s)	107
BmrFI	CCNGG	4 cut(s)	101, 156, 167, 336
Bpu10I	CCTNAGC	1 cut(s)	351
BpuEI	CTTGAG	1 cut(s)	537
BpuMI	CCSGG	2 cut(s)	156, 336
BsaJI	CCNNGG	3 cut(s)	34, 644, 737
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse118I	RCCGGY	1 cut(s)	722
Bse1I	ACTGG	1 cut(s)	201
Bse3DI	GCAATG	2 cut(s)	89, 276
BseBI	CCWGG	2 cut(s)	101, 167
BseDI	CCNNGG	3 cut(s)	34, 644, 737
BseGI	GGATG	5 cut(s)	75, 400, 514, 589, 654
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMI	GCAATG	2 cut(s)	89, 276
BseNI	ACTGG	1 cut(s)	201
BseXI	GCAGC	2 cut(s)	83, 130
BshFI	GGCC	3 cut(s)	69, 113, 170
BsiHKCI	CYCGRG	1 cut(s)	430
BsiSI	CCGG	4 cut(s)	110, 156, 335, 723
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	2 cut(s)	497, 653
BsmBI	CGTCTC	1 cut(s)	497
BsmI	GAATGC	1 cut(s)	697
BsnI	GGCC	3 cut(s)	69, 113, 170
BsoBI	CYCGRG	1 cut(s)	430
Bsp1286I	GDGCHC	2 cut(s)	22, 51
Bsp143I	GATC	1 cut(s)	498
Bsp19I	CCATGG	1 cut(s)	34
BspACI	CCGC	3 cut(s)	130, 220, 564
BspANI	GGCC	3 cut(s)	69, 113, 170
BspMAI	CTGCAG	1 cut(s)	59
BsrDI	GCAATG	2 cut(s)	89, 276
BsrFI	RCCGGY	1 cut(s)	722
BsrI	ACTGG	1 cut(s)	201
BssAI	RCCGGY	1 cut(s)	722
BssECI	CCNNGG	3 cut(s)	34, 644, 737
BssMI	GATC	1 cut(s)	498
BssT1I	CCWWGG	2 cut(s)	34, 737
Bst2UI	CCWGG	2 cut(s)	101, 167
Bst4CI	ACNGT	2 cut(s)	91, 298
Bst6I	CTCTTC	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	351
BstDSI	CCRYGG	2 cut(s)	34, 644
BstF5I	GGATG	5 cut(s)	75, 400, 514, 589, 654
BstH2I	RGCGCY	1 cut(s)	327
BstHHI	GCGC	1 cut(s)	326
BstKTI	GATC	1 cut(s)	501
BstMAI	GTCTC	2 cut(s)	497, 653
BstMBI	GATC	1 cut(s)	498
BstMWI	GCNNNNNNNGC	1 cut(s)	323
BstNI	CCWGG	2 cut(s)	101, 167
BstNSI	RCATGY	1 cut(s)	621
BstSCI	CCNGG	4 cut(s)	99, 154, 165, 334
BstSFI	CTRYAG	1 cut(s)	55
BstV1I	GCAGC	2 cut(s)	83, 130
BsuRI	GGCC	3 cut(s)	69, 113, 170
BtgI	CCRYGG	2 cut(s)	34, 644
BtrI	CACGTC	2 cut(s)	127, 303
BtsCI	GGATG	5 cut(s)	75, 400, 514, 589, 654
Cac8I	GCNNGC	1 cut(s)	220
CaiI	CAGNNNCTG	1 cut(s)	484
CfoI	GCGC	1 cut(s)	326
Cfr10I	RCCGGY	1 cut(s)	722
Cfr13I	GGNCC	1 cut(s)	107
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	4 cut(s)	87, 92, 615, 683
CviAII	CATG	5 cut(s)	35, 215, 271, 618, 727
CviQI	GTAC	4 cut(s)	87, 92, 615, 683
DdeI	CTNAG	1 cut(s)	351
DpnI	GATC	1 cut(s)	500
DpnII	GATC	1 cut(s)	498
EaeI	YGGCCR	2 cut(s)	67, 111
Eam1104I	CTCTTC	1 cut(s)	146
EarI	CTCTTC	1 cut(s)	146
EciI	GGCGGA	1 cut(s)	119
Eco130I	CCWWGG	2 cut(s)	34, 737
Eco24I	GRGCYC	2 cut(s)	22, 51
Eco47I	GGWCC	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	430
EcoRII	CCWGG	2 cut(s)	99, 165
EcoT14I	CCWWGG	2 cut(s)	34, 737
EcoT38I	GRGCYC	2 cut(s)	22, 51
ErhI	CCWWGG	2 cut(s)	34, 737
Esp3I	CGTCTC	1 cut(s)	497
FaeI	CATG	5 cut(s)	38, 218, 274, 621, 730
FatI	CATG	5 cut(s)	34, 214, 270, 617, 726
FauI	CCCGC	1 cut(s)	227
Fnu4HI	GCNGC	2 cut(s)	97, 119
FokI	GGATG	5 cut(s)	62, 407, 521, 596, 661
FriOI	GRGCYC	2 cut(s)	22, 51
Fsp4HI	GCNGC	2 cut(s)	97, 119
GlaI	GCGC	1 cut(s)	325
GluI	GCNGC	2 cut(s)	97, 119
HaeII	RGCGCY	1 cut(s)	327
HaeIII	GGCC	3 cut(s)	69, 113, 170
HapII	CCGG	4 cut(s)	110, 156, 335, 723
HgaI	GACGC	1 cut(s)	365
HhaI	GCGC	1 cut(s)	326
Hin1II	CATG	5 cut(s)	38, 218, 274, 621, 730
Hin6I	GCGC	1 cut(s)	324
HinP1I	GCGC	1 cut(s)	324
HincII	GTYRAC	1 cut(s)	636
HindII	GTYRAC	1 cut(s)	636
HinfI	GANTC	5 cut(s)	39, 389, 443, 493, 711
HpaII	CCGG	4 cut(s)	110, 156, 335, 723
HphI	GGTGA	1 cut(s)	578
Hpy166II	GTNNAC	2 cut(s)	294, 636
Hpy188I	TCNGA	5 cut(s)	394, 486, 498, 710, 716
Hpy188III	TCNNGA	5 cut(s)	286, 432, 502, 554, 658
Hpy8I	GTNNAC	2 cut(s)	294, 636
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	3 cut(s)	32, 265, 307
HpyCH4III	ACNGT	2 cut(s)	91, 298
HpyCH4IV	ACGT	2 cut(s)	126, 302
HpyCH4V	TGCA	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	1 cut(s)	323
HpyF3I	CTNAG	1 cut(s)	351
HpySE526I	ACGT	2 cut(s)	126, 302
Hsp92II	CATG	5 cut(s)	38, 218, 274, 621, 730
HspAI	GCGC	1 cut(s)	324
Kzo9I	GATC	1 cut(s)	498
LmnI	GCTCC	1 cut(s)	126
Lsp1109I	GCAGC	2 cut(s)	83, 130
MaeII	ACGT	2 cut(s)	126, 302
MaeIII	GTNAC	4 cut(s)	148, 203, 298, 589
MalI	GATC	1 cut(s)	500
MboI	GATC	1 cut(s)	498
MboII	GAAGA	3 cut(s)	133, 646, 742
MhlI	GDGCHC	2 cut(s)	22, 51
MlsI	TGGCCA	1 cut(s)	69
MluCI	AATT	6 cut(s)	184, 237, 344, 409, 417, 557
MluNI	TGGCCA	1 cut(s)	69
MlyI	GAGTC	2 cut(s)	33, 452
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	6 cut(s)	83, 149, 181, 218, 349, 580
Mox20I	TGGCCA	1 cut(s)	69
MscI	TGGCCA	1 cut(s)	69
MseI	TTAA	3 cut(s)	408, 416, 745
Msp20I	TGGCCA	1 cut(s)	69
MspI	CCGG	4 cut(s)	110, 156, 335, 723
MspR9I	CCNGG	4 cut(s)	101, 156, 167, 336
Mva1269I	GAATGC	1 cut(s)	697
MvaI	CCWGG	2 cut(s)	101, 167
MwoI	GCNNNNNNNGC	1 cut(s)	323
NciI	CCSGG	2 cut(s)	156, 336
NcoI	CCATGG	1 cut(s)	34
NdeII	GATC	1 cut(s)	498
NlaIII	CATG	5 cut(s)	38, 218, 274, 621, 730
NmuCI	GTSAC	3 cut(s)	148, 298, 589
NspI	RCATGY	1 cut(s)	621
PaeR7I	CTCGAG	1 cut(s)	430
PciI	ACATGT	1 cut(s)	617
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	697
PfeI	GAWTC	3 cut(s)	389, 493, 711
PkrI	GCNGC	2 cut(s)	98, 120
PleI	GAGTC	2 cut(s)	33, 451
PpsI	GAGTC	2 cut(s)	33, 451
PscI	ACATGT	1 cut(s)	617
Psp6I	CCWGG	2 cut(s)	99, 165
PspGI	CCWGG	2 cut(s)	99, 165
PspPI	GGNCC	1 cut(s)	107
PstI	CTGCAG	1 cut(s)	59
PstNI	CAGNNNCTG	1 cut(s)	484
RsaI	GTAC	4 cut(s)	88, 93, 616, 684
RsaNI	GTAC	4 cut(s)	87, 92, 615, 683
SaqAI	TTAA	3 cut(s)	408, 416, 745
SatI	GCNGC	2 cut(s)	97, 119
Sau3AI	GATC	1 cut(s)	498
Sau96I	GGNCC	1 cut(s)	107
SchI	GAGTC	2 cut(s)	33, 452
ScrFI	CCNGG	4 cut(s)	101, 156, 167, 336
SduI	GDGCHC	2 cut(s)	22, 51
SfcI	CTRYAG	1 cut(s)	55
Sfr274I	CTCGAG	1 cut(s)	430
SinI	GGWCC	1 cut(s)	107
SlaI	CTCGAG	1 cut(s)	430
SmlI	CTYRAG	2 cut(s)	430, 552
SmoI	CTYRAG	2 cut(s)	430, 552
Sse9I	AATT	6 cut(s)	184, 237, 344, 409, 417, 557
SsiI	CCGC	3 cut(s)	130, 220, 564
StyD4I	CCNGG	4 cut(s)	99, 154, 165, 334
StyI	CCWWGG	2 cut(s)	34, 737
TaaI	ACNGT	2 cut(s)	91, 298
TaiI	ACGT	2 cut(s)	129, 305
TaqI	TCGA	5 cut(s)	42, 51, 431, 501, 657
TasI	AATT	6 cut(s)	184, 237, 344, 409, 417, 557
TatI	WGTACW	1 cut(s)	682
TfiI	GAWTC	3 cut(s)	389, 493, 711
Tru1I	TTAA	3 cut(s)	408, 416, 745
Tru9I	TTAA	3 cut(s)	408, 416, 745
TseFI	GTSAC	3 cut(s)	148, 298, 589
TseI	GCWGC	2 cut(s)	96, 118
Tsp45I	GTSAC	3 cut(s)	148, 298, 589
TspDTI	ATGAA	4 cut(s)	17, 350, 464, 743
TspGWI	ACGGA	1 cut(s)	521
VpaK11BI	GGWCC	1 cut(s)	107
XapI	RAATTY	1 cut(s)	237
XceI	RCATGY	1 cut(s)	621
XhoI	CTCGAG	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.