Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0013262

Physical Location & Seq

Genomic Coordinates Forward (+)

12380714 .. 12383072

Gene Structure 2359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG141000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2001 bp

ATGTGGTTTACAAAGCCATTGAACATTCAAATCTCGGCCCCAACCAACGGCTACATCCAACGCGCCCTTCAAGGCCTTCACACCGACGGCCTCGACCTCGCCGCCTATGGCCGCCTCTTCCAGCACTTCACCGACCGCCGCCTCCCGCGTCAGGCCAAGCAGCTCCACTCCCGCCTCGTCCTCTTCTCCGTCAAGCCCGGCAACTTCCTCGCCTCAAAACTCATCAACTTCTACTCTAGAGCCAACCAGCTCAAACAAGCCCACAAGGTGTTCGACGAAATTCCCCAAAAGAACACTTTCGCTTGGAACGCCCTGCTCATTGGGTACTCCATCCGCAACATGCATACCGATACTCTGAGGGTGTTTTCGGCCATGGTGGAGTCCGGCTCGCCGGAAGTGAAGCCGGATAATTTCACTATAACGTGTGTGATGAAGGCGCTGGGGGGTTTGTTTTCCGGTTCGGATTTGGCTAAGGAGGTGCATTGCTTTGTTCTGCGATATGGGTTCGATTCGGATGTGTTTGTTGCTAATTGTTTGATGACTTTCTACTCGAGATGTGATGAGGTTGGGATGGCCAGGAGTTTGTTTGATAGAATGCCGGGGAAAGATATCGTGTCCTGGAATTCGATGATTGCTGGGTATTCTCAGGCTGGGTATTATGGAGAGTGTAAGGAGTTGTATAGGGAGATGGTGGAGTCTGTGGAGTTGAGGCCTGATGATGTGACTGCAGTTAGTGTGTTGCAGGCATGTGTACAGTCCAGTGATCTTAAATTTGGTATGGAGGTTCATCAGTTTTTGAATGAGAGTCACATTGAGATGAATGTCATGCTTTACAATGCTCTTATAGGGTTATATGCAAGATGTGGTAAGTTGGATTGTGCTCAGGAATTGTTTGATGGAATGAGCGAGAAGGATGATGTTACATATGGCTCTTTAGTTTCCGGGTACATGTTTCACGGATTTGTTGATAAAGCCATGGATATTTTCCGAGAATGTACCAACCGAAGCTTAAGTACTTGGAATGCTATGATTTCGGGTCTGGTTCAGAACAATCGGCATGAGGCTGCCATAGAATTAGTTCGTGAAATGCAGGCATGTGGTTTCAAACCAAATACCGTGACATTGTCAAGTGTTCTTCCTGCAATTTCATATTTCTCAAATTTAAAAGTAGGGAAAGAAATACATGCTCATTCAGTCAGAAACAATTTTGATTGGAATATCTATGTTGCAACTGCTATTATCGATACTTATGCAAAGTCGGGGTTTCTTCCTGGGGCACAACAGGTTTTTGATCAATCAAAATATAAGAGTTTGGTCATTTGGACAGCAATAATCTCAGCTTATGCTGCCCATGGAGATGCTTATGTGTCTATTGGTCTGTTTTACAAGATGCTTAGTACTGGGATACAGCCAGATGAAGTAACGTTTACAGCAGTATTAACAGCTTGTTCTCATTCTGGAGTGGTGGATGAAGCTTGGAAAATCTTTAAGGCCATGTTTCCGGTATATGGTATTCACCCTTCGGTTGAGCACTATGCATGCATGGTTGGTGTTCTTAGCCGGGCAGGGAGACTCACTGAAGCTGCAGAGTTAATACAAAACATGTCAATCGAGCCAAGTGCTAAAGTTTGGGGTGCATTACTTAATGGGGCTTCAGTTGCTTGTAATGTTGAATTGGGAAAGTTTGTTTGTGACCGTCTATTTCAGATGGAGCCTGAGAATACCGGGAACTATATCATTATGGCAAATTTATATTCACAAGCTGGGAGATGGGAAGAAGCTGATAAGGTCAGGGAAAGAATGAAAGAAGTTGGATTACAGAAAATTCCTGGTATTAGCTGGATTGAAACAATTGATGGATTGCACAGCTTCATAGCAAGGGATGCATCTAATGTAAGAACTGAAGCGATTTATGAAATACTTGAAGGATTGCTAGGATTGATGAAAGAGAAAGGGTATGTTTTGCAGGATGAATTAGATGAGGAGAGTGTCAATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDP-OH_P_transf PPR PPR_2

Protein Analysis

666

Amino Acids

74.53

Weight (kDa)

5.77

Isoelectric Point (pI)

39.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	202 - 251	5e-08	PPR repeat family
PPR	PF01535	205 - 232	6.1e-08	PPR repeat
PPR_1	PF12854	271 - 301	4.2e-06	PPR repeat
PPR_2	PF13041	338 - 379	1.1e-10	PPR repeat family
PPR	PF01535	338 - 368	1.9e-07	PPR repeat
PPR_2	PF13041	437 - 484	5.8e-08	PPR repeat family
PPR_long	PF17177	452 - 536	2e-06	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	556 - 616	1.2e-20	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0013262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37310
fragaria_vesca	FvH4_6g14880
malus_domestica	MD04G1110700.v1.1 MD12G1130100.v1.1 MD15G1361800.v1.1
pyrus_communis	pycom04g10440 pycom12g12620
rosa_chinensis	RchiOBHm_Chr3g0468091
rosa_laevigata	RLG00000024450
rosa_multiflora	Rmu_co8293603.1_g000001 Rmu_co8334519.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413060
rosa_rugosa	Rorug03G0092600
rosa_samantha	Rh3AG141000 Rh3BG162500 Rh3CG162300 Rh3DG163000
rosa_wichuraiana	Rw3G013320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	63, 148
AciI	CCGC	7 cut(s)	102, 112, 136, 139, 146, 172, 334
AclI	AACGTT	1 cut(s)	1424
AcoI	YGGCCR	3 cut(s)	109, 369, 573
AcsI	RAATTY	6 cut(s)	279, 622, 770, 1159, 1747, 1824
AcuI	CTGAAG	3 cut(s)	1599, 1638, 1923
AdeI	CACNNNGTG	1 cut(s)	268
AfaI	GTAC	6 cut(s)	326, 753, 947, 997, 1015, 1399
AfiI	CCNNNNNNNGG	3 cut(s)	47, 151, 1508
AflII	CTTAAG	1 cut(s)	1009
AflIII	ACRYGT	3 cut(s)	422, 948, 1602
AgsI	TTSAA	8 cut(s)	22, 29, 71, 799, 1105, 1673, 1847, 1925
AjnI	CCWGG	4 cut(s)	575, 617, 1270, 1828
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
Alw21I	GWGCWC	2 cut(s)	883, 1533
Alw26I	GTCTC	1 cut(s)	1564
Ama87I	CYCGRG	1 cut(s)	550
AoxI	GGCC	9 cut(s)	36, 73, 88, 109, 153, 369, 573, 710, 1491
ApeKI	GCWGC	4 cut(s)	160, 1064, 1346, 1583
ApoI	RAATTY	6 cut(s)	279, 622, 770, 1159, 1747, 1824
Asp700I	GAANNNNTTC	2 cut(s)	296, 1077
AspLEI	GCGC	2 cut(s)	65, 439
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	5 cut(s)	198, 600, 943, 1562, 1726
AsuHPI	GGTGA	2 cut(s)	121, 1508
AvaI	CYCGRG	1 cut(s)	550
BaeGI	GKGCMC	1 cut(s)	1279
BalI	TGGCCA	1 cut(s)	575
BarI	GAAGNNNNNNTAC	6 cut(s)	997, 1029, 1504, 1536, 1800, 1832
Bbv12I	GWGCWC	2 cut(s)	883, 1533
BbvI	GCAGC	4 cut(s)	172, 1051, 1333, 1570
BccI	CCATC	7 cut(s)	338, 565, 682, 890, 1702, 1764, 1850
BceAI	ACGGC	2 cut(s)	64, 103
BcgI	CGANNNNNNTGC	6 cut(s)	190, 224, 1232, 1266, 1601, 1635
BciT130I	CCWGG	4 cut(s)	577, 619, 1272, 1830
BciVI	GTATCC	1 cut(s)	1398
BclI	TGATCA	1 cut(s)	1291
BcnI	CCSGG	5 cut(s)	198, 600, 943, 1562, 1726
BcoDI	GTCTC	1 cut(s)	1564
BfaI	CTAG	2 cut(s)	237, 1934
BfmI	CTRYAG	2 cut(s)	726, 1584
BfoI	RGCGCY	1 cut(s)	440
BfrI	CTTAAG	1 cut(s)	1009
BfuI	GTATCC	1 cut(s)	1398
BisI	GCNGC	7 cut(s)	102, 112, 139, 161, 1065, 1347, 1584
BlsI	GCNGC	7 cut(s)	103, 113, 140, 162, 1066, 1348, 1585
BmcAI	AGTACT	2 cut(s)	1015, 1399
Bme1390I	CCNGG	9 cut(s)	198, 577, 600, 619, 943, 1272, 1562, 1726, 1830
BmeT110I	CYCGRG	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	39, 1713
BmrFI	CCNGG	9 cut(s)	198, 577, 600, 619, 943, 1272, 1562, 1726, 1830
BmrI	ACTGGG	1 cut(s)	1410
BmsI	GCATC	4 cut(s)	1348, 1380, 1873, 1895
BmuI	ACTGGG	1 cut(s)	1410
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpmI	CTGGAG	1 cut(s)	1479
Bpu10I	CCTNAGC	2 cut(s)	471, 882
BpuMI	CCSGG	5 cut(s)	198, 600, 943, 1562, 1726
Bsa29I	ATCGAT	1 cut(s)	1242
BsaJI	CCNNGG	5 cut(s)	372, 599, 975, 1271, 1351
BsaWI	WCCGGW	2 cut(s)	455, 1501
Bsc4I	CCNNNNNNNGG	3 cut(s)	47, 151, 1508
Bse1I	ACTGG	2 cut(s)	759, 1405
Bse3DI	GCAATG	1 cut(s)	481
BseBI	CCWGG	4 cut(s)	577, 619, 1272, 1830
BseCI	ATCGAT	1 cut(s)	1242
BseDI	CCNNGG	5 cut(s)	372, 599, 975, 1271, 1351
BseGI	GGATG	8 cut(s)	54, 330, 520, 576, 919, 1474, 1888, 1975
BseLI	CCNNNNNNNGG	3 cut(s)	47, 151, 1508
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	5 cut(s)	347, 659, 896, 1350, 1707
BseNI	ACTGG	2 cut(s)	759, 1405
BseRI	GAGGAG	1 cut(s)	1997
BseSI	GKGCMC	1 cut(s)	1279
BseXI	GCAGC	4 cut(s)	172, 1051, 1333, 1570
BseYI	CCCAGC	4 cut(s)	439, 635, 650, 1763
Bsh1236I	CGCG	2 cut(s)	63, 148
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	9 cut(s)	38, 75, 90, 111, 155, 371, 575, 712, 1493
BshVI	ATCGAT	1 cut(s)	1242
BsiEI	CGRYCG	1 cut(s)	136
BsiHKAI	GWGCWC	2 cut(s)	883, 1533
BsiHKCI	CYCGRG	1 cut(s)	550
BslI	CCNNNNNNNGG	3 cut(s)	47, 151, 1508
BsmAI	GTCTC	1 cut(s)	1564
BsmI	GAATGC	2 cut(s)	600, 1027
BsnI	GGCC	9 cut(s)	38, 75, 90, 111, 155, 371, 575, 712, 1493
BsoBI	CYCGRG	1 cut(s)	550
Bsp1286I	GDGCHC	3 cut(s)	883, 1279, 1533
Bsp1407I	TGTACA	1 cut(s)	751
Bsp143I	GATC	2 cut(s)	763, 1291
Bsp19I	CCATGG	3 cut(s)	372, 975, 1351
BspACI	CCGC	7 cut(s)	102, 112, 136, 139, 146, 172, 334
BspANI	GGCC	9 cut(s)	38, 75, 90, 111, 155, 371, 575, 712, 1493
BspCNI	CTCAG	5 cut(s)	348, 658, 895, 1349, 1708
BspDI	ATCGAT	1 cut(s)	1242
BspFNI	CGCG	2 cut(s)	63, 148
BspLI	GGNNCC	2 cut(s)	39, 1713
BspMAI	CTGCAG	2 cut(s)	730, 1588
BspTI	CTTAAG	1 cut(s)	1009
BsrDI	GCAATG	1 cut(s)	481
BsrGI	TGTACA	1 cut(s)	751
BsrI	ACTGG	2 cut(s)	759, 1405
BssECI	CCNNGG	5 cut(s)	372, 599, 975, 1271, 1351
BssMI	GATC	2 cut(s)	763, 1291
BssT1I	CCWWGG	3 cut(s)	372, 975, 1351
Bst2UI	CCWGG	4 cut(s)	577, 619, 1272, 1830
Bst4CI	ACNGT	3 cut(s)	756, 1117, 1697
Bst6I	CTCTTC	2 cut(s)	122, 188
BstAFI	CTTAAG	1 cut(s)	1009
BstAPI	GCANNNNNTGC	1 cut(s)	1883
BstAUI	TGTACA	1 cut(s)	751
BstC8I	GCNNGC	4 cut(s)	389, 744, 1092, 1540
BstDEI	CTNAG	8 cut(s)	356, 471, 645, 882, 1336, 1394, 1556, 1716
BstDSI	CCRYGG	3 cut(s)	372, 975, 1351
BstF5I	GGATG	8 cut(s)	54, 330, 520, 576, 919, 1474, 1888, 1975
BstFNI	CGCG	2 cut(s)	63, 148
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	2 cut(s)	65, 439
BstKTI	GATC	2 cut(s)	766, 1294
BstMAI	GTCTC	1 cut(s)	1564
BstMBI	GATC	2 cut(s)	763, 1291
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	4 cut(s)	308, 1346, 1658, 1883
BstNI	CCWGG	4 cut(s)	577, 619, 1272, 1830
BstNSI	RCATGY	7 cut(s)	343, 750, 952, 1098, 1187, 1542, 1606
BstSCI	CCNGG	9 cut(s)	196, 575, 598, 617, 941, 1270, 1560, 1724, 1828
BstSFI	CTRYAG	2 cut(s)	726, 1584
BstSLI	GKGCMC	1 cut(s)	1279
BstUI	CGCG	2 cut(s)	63, 148
BstV1I	GCAGC	4 cut(s)	172, 1051, 1333, 1570
Bsu15I	ATCGAT	1 cut(s)	1242
BsuI	GTATCC	1 cut(s)	1398
BsuRI	GGCC	9 cut(s)	38, 75, 90, 111, 155, 371, 575, 712, 1493
BsuTUI	ATCGAT	1 cut(s)	1242
BtgI	CCRYGG	3 cut(s)	372, 975, 1351
BtsCI	GGATG	8 cut(s)	54, 330, 520, 576, 919, 1474, 1888, 1975
BtsIMutI	CAGTG	2 cut(s)	766, 1575
Cac8I	GCNNGC	4 cut(s)	389, 744, 1092, 1540
CfoI	GCGC	2 cut(s)	65, 439
Cfr13I	GGNCC	1 cut(s)	37
ClaI	ATCGAT	1 cut(s)	1242
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	6 cut(s)	325, 752, 946, 996, 1014, 1398
CviQI	GTAC	6 cut(s)	325, 752, 946, 996, 1014, 1398
DdeI	CTNAG	8 cut(s)	356, 471, 645, 882, 1336, 1394, 1556, 1716
DpnI	GATC	2 cut(s)	765, 1293
DpnII	GATC	2 cut(s)	763, 1291
DraI	TTTAAA	1 cut(s)	1164
DraIII	CACNNNGTG	1 cut(s)	268
EaeI	YGGCCR	3 cut(s)	109, 369, 573
Eam1104I	CTCTTC	2 cut(s)	122, 188
EarI	CTCTTC	2 cut(s)	122, 188
Eco130I	CCWWGG	3 cut(s)	372, 975, 1351
Eco147I	AGGCCT	2 cut(s)	75, 712
Eco32I	GATATC	1 cut(s)	610
Eco57I	CTGAAG	3 cut(s)	1599, 1638, 1923
Eco88I	CYCGRG	1 cut(s)	550
EcoRI	GAATTC	1 cut(s)	622
EcoRII	CCWGG	4 cut(s)	575, 617, 1270, 1828
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	3 cut(s)	372, 975, 1351
EcoT22I	ATGCAT	4 cut(s)	345, 1540, 1544, 1888
ErhI	CCWWGG	3 cut(s)	372, 975, 1351
FauI	CCCGC	2 cut(s)	153, 179
FauNDI	CATATG	1 cut(s)	925
FbaI	TGATCA	1 cut(s)	1291
Fnu4HI	GCNGC	7 cut(s)	102, 112, 139, 161, 1065, 1347, 1584
FokI	GGATG	8 cut(s)	41, 317, 527, 583, 926, 1481, 1895, 1982
Fsp4HI	GCNGC	7 cut(s)	102, 112, 139, 161, 1065, 1347, 1584
FspBI	CTAG	2 cut(s)	237, 1934
GlaI	GCGC	2 cut(s)	64, 438
GluI	GCNGC	7 cut(s)	102, 112, 139, 161, 1065, 1347, 1584
GsaI	CCCAGC	4 cut(s)	443, 639, 654, 1767
GsuI	CTGGAG	1 cut(s)	1479
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	9 cut(s)	38, 75, 90, 111, 155, 371, 575, 712, 1493
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	2 cut(s)	65, 439
Hin6I	GCGC	2 cut(s)	63, 437
HinP1I	GCGC	2 cut(s)	63, 437
HindIII	AAGCTT	2 cut(s)	1006, 1473
HinfI	GANTC	5 cut(s)	380, 509, 695, 805, 1572
HphI	GGTGA	2 cut(s)	121, 1508
Hpy166II	GTNNAC	3 cut(s)	9, 752, 1428
Hpy188I	TCNGA	7 cut(s)	357, 463, 514, 989, 1047, 1199, 1707
Hpy188III	TCNNGA	5 cut(s)	237, 552, 884, 1082, 1458
Hpy8I	GTNNAC	3 cut(s)	9, 752, 1428
Hpy99I	CGWCG	2 cut(s)	89, 278
HpyAV	CCTTC	6 cut(s)	77, 86, 427, 904, 1530, 1919
HpyCH4III	ACNGT	3 cut(s)	756, 1117, 1697
HpyCH4IV	ACGT	2 cut(s)	422, 1424
HpyF10VI	GCNNNNNNNGC	4 cut(s)	308, 1346, 1658, 1883
HpyF3I	CTNAG	8 cut(s)	356, 471, 645, 882, 1336, 1394, 1556, 1716
HpySE526I	ACGT	2 cut(s)	422, 1424
HspAI	GCGC	2 cut(s)	63, 437
Ksp22I	TGATCA	1 cut(s)	1291
Kzo9I	GATC	2 cut(s)	763, 1291
LmnI	GCTCC	2 cut(s)	168, 1711
Lsp1109I	GCAGC	4 cut(s)	172, 1051, 1333, 1570
LweI	GCATC	4 cut(s)	1348, 1380, 1873, 1895
MaeI	CTAG	2 cut(s)	237, 1934
MaeII	ACGT	2 cut(s)	422, 1424
MaeIII	GTNAC	6 cut(s)	721, 806, 919, 1117, 1420, 1691
MalI	GATC	2 cut(s)	765, 1293
MboI	GATC	2 cut(s)	763, 1291
MboII	GAAGA	5 cut(s)	109, 175, 1127, 1259, 1787
MfeI	CAATTG	1 cut(s)	1851
MhlI	GDGCHC	3 cut(s)	883, 1279, 1533
MlsI	TGGCCA	1 cut(s)	575
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	4 cut(s)	389, 704, 814, 1566
MmeI	TCCRAC	3 cut(s)	82, 852, 1792
Mox20I	TGGCCA	1 cut(s)	575
Mph1103I	ATGCAT	4 cut(s)	345, 1540, 1544, 1888
MroXI	GAANNNNTTC	2 cut(s)	296, 1077
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	7 cut(s)	768, 1010, 1163, 1439, 1488, 1592, 1644
MslI	CAYNNNNRTG	2 cut(s)	815, 1356
Msp20I	TGGCCA	1 cut(s)	575
MspCI	CTTAAG	1 cut(s)	1009
MspR9I	CCNGG	9 cut(s)	198, 577, 600, 619, 943, 1272, 1562, 1726, 1830
MunI	CAATTG	1 cut(s)	1851
Mva1269I	GAATGC	2 cut(s)	600, 1027
MvaI	CCWGG	4 cut(s)	577, 619, 1272, 1830
MvnI	CGCG	2 cut(s)	63, 148
MwoI	GCNNNNNNNGC	4 cut(s)	308, 1346, 1658, 1883
NciI	CCSGG	5 cut(s)	198, 600, 943, 1562, 1726
NcoI	CCATGG	3 cut(s)	372, 975, 1351
NdeI	CATATG	1 cut(s)	925
NdeII	GATC	2 cut(s)	763, 1291
NlaIV	GGNNCC	2 cut(s)	39, 1713
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	4 cut(s)	721, 806, 1117, 1691
NsiI	ATGCAT	4 cut(s)	345, 1540, 1544, 1888
NspI	RCATGY	7 cut(s)	343, 750, 952, 1098, 1187, 1542, 1606
PaeI	GCATGC	1 cut(s)	1542
PaeR7I	CTCGAG	1 cut(s)	550
PceI	AGGCCT	2 cut(s)	75, 712
PciI	ACATGT	2 cut(s)	948, 1602
PctI	GAATGC	2 cut(s)	600, 1027
PdmI	GAANNNNTTC	2 cut(s)	296, 1077
PfeI	GAWTC	1 cut(s)	509
PflFI	GACNNNGTC	1 cut(s)	1123
PfoI	TCCNGGA	1 cut(s)	617
PkrI	GCNGC	7 cut(s)	103, 113, 140, 162, 1066, 1348, 1585
PleI	GAGTC	4 cut(s)	388, 703, 813, 1566
PpsI	GAGTC	4 cut(s)	388, 703, 813, 1566
PscI	ACATGT	2 cut(s)	948, 1602
Psp1406I	AACGTT	1 cut(s)	1424
Psp6I	CCWGG	4 cut(s)	575, 617, 1270, 1828
PspFI	CCCAGC	4 cut(s)	439, 635, 650, 1763
PspGI	CCWGG	4 cut(s)	575, 617, 1270, 1828
PspN4I	GGNNCC	2 cut(s)	39, 1713
PspPI	GGNCC	1 cut(s)	37
PstI	CTGCAG	2 cut(s)	730, 1588
PsyI	GACNNNGTC	1 cut(s)	1123
RsaI	GTAC	6 cut(s)	326, 753, 947, 997, 1015, 1399
RsaNI	GTAC	6 cut(s)	325, 752, 946, 996, 1014, 1398
RseI	CAYNNNNRTG	2 cut(s)	815, 1356
SaqAI	TTAA	7 cut(s)	768, 1010, 1163, 1439, 1488, 1592, 1644
SatI	GCNGC	7 cut(s)	102, 112, 139, 161, 1065, 1347, 1584
Sau3AI	GATC	2 cut(s)	763, 1291
Sau96I	GGNCC	1 cut(s)	37
ScaI	AGTACT	2 cut(s)	1015, 1399
SchI	GAGTC	4 cut(s)	389, 704, 814, 1566
ScrFI	CCNGG	9 cut(s)	198, 577, 600, 619, 943, 1272, 1562, 1726, 1830
SduI	GDGCHC	3 cut(s)	883, 1279, 1533
SfaNI	GCATC	4 cut(s)	1348, 1380, 1873, 1895
SfcI	CTRYAG	2 cut(s)	726, 1584
Sfr274I	CTCGAG	1 cut(s)	550
SlaI	CTCGAG	1 cut(s)	550
SmiMI	CAYNNNNRTG	2 cut(s)	815, 1356
SmlI	CTYRAG	2 cut(s)	550, 1009
SmoI	CTYRAG	2 cut(s)	550, 1009
SphI	GCATGC	1 cut(s)	1542
SseBI	AGGCCT	2 cut(s)	75, 712
SsiI	CCGC	7 cut(s)	102, 112, 136, 139, 146, 172, 334
SspMI	CTAG	2 cut(s)	237, 1934
StuI	AGGCCT	2 cut(s)	75, 712
StyD4I	CCNGG	9 cut(s)	196, 575, 598, 617, 941, 1270, 1560, 1724, 1828
StyI	CCWWGG	3 cut(s)	372, 975, 1351
TaaI	ACNGT	3 cut(s)	756, 1117, 1697
TaiI	ACGT	2 cut(s)	425, 1427
TaqI	TCGA	7 cut(s)	93, 273, 507, 551, 626, 1242, 1611
TatI	WGTACW	3 cut(s)	751, 1013, 1397
TauI	GCSGC	3 cut(s)	104, 114, 141
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	7 cut(s)	768, 1010, 1163, 1439, 1488, 1592, 1644
Tru9I	TTAA	7 cut(s)	768, 1010, 1163, 1439, 1488, 1592, 1644
TscAI	CASTG	2 cut(s)	766, 1582
TseFI	GTSAC	4 cut(s)	721, 806, 1117, 1691
TseI	GCWGC	4 cut(s)	160, 1064, 1346, 1583
Tsp45I	GTSAC	4 cut(s)	721, 806, 1117, 1691
TspGWI	ACGGA	2 cut(s)	178, 972
TspRI	CASTG	2 cut(s)	766, 1582
Tth111I	GACNNNGTC	1 cut(s)	1123
Vha464I	CTTAAG	1 cut(s)	1009
XapI	RAATTY	6 cut(s)	279, 622, 770, 1159, 1747, 1824
XbaI	TCTAGA	1 cut(s)	236
XceI	RCATGY	7 cut(s)	343, 750, 952, 1098, 1187, 1542, 1606
XhoI	CTCGAG	1 cut(s)	550
XmnI	GAANNNNTTC	2 cut(s)	296, 1077
XspI	CTAG	2 cut(s)	237, 1934
ZrmI	AGTACT	2 cut(s)	1015, 1399
Zsp2I	ATGCAT	4 cut(s)	345, 1540, 1544, 1888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.