Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0013262

Physical Location & Seq

Genomic Coordinates Reverse (-)

35491362 .. 35494694

Gene Structure 3333 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00413060.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2001 bp

ATGTGGTTTACAAAGCCATTGAACATTCAAATCTCGGCCCCAACCAACGGCTACATCCAACGCGCCCTTCAAGGCCTTCACACCGACGGCCTCGACCTCGCCGCCTATGGCCGCCTCTTCCAGCACTTCACAGACCGCCGCCTGCCGCGTCAGGCCAAGCAGCTCCACTCCCGCCTTGTCCTCTTCTCCGTCAAGCCCGGCAACTTCCTCGCCTCAAAACTCATCAACTTCTACTCTAGAGCCAACCAGCTCAAACAAGCCCACAAGGTGTTCGACGAAATTCCCCACAAGAACACTTTCGCTTGGAACGCCCTGCTCATTGGGTATTCCATTCGCAACATGCACACCGATACTCTGAGGGTGTTTTCGGCCATGGTGGAGTCGGGCTCGCCGGAAGTGAAGCCAGATAATTTCACTATAACGTGTGTGATGAAGGCGCTGGGGGGTTTGTTTTCCGGTTCGGATTTGGCTAAGGAGGTGCATTGCTTTGTTCTGCGAAATGGCTTCGATTCGGATGTGTTTGTTGCTAATTGTTTGATGACTTTCTACTCGAGATGTGATGAGGTTGGGATGGCCAGGAGTTTGTTTGATAGAATGCCGGAGAAAGATATCGTGTCCTGGAATTCGATGATTGCTGGGTATTCTCAGGCTGGGTATTATGGAGAGTGTAAGGAGTTGTATAGGGAGATGATGGAGTCTGTGGAGTTGAGGCCTGATGATGTGACTGCAGTTAGTGTCTTGCAGGCATGTGTACAGTCCAGTGATCTTAAATTTGGAATGGAGGTTCATCAGTTTTTGAATGAGAGTCACATTGAGATGAATGTCATGCTTTACAATGCTCTTATAGGGTTATATGCAAGATGTGGTAAGTTCGATTGTGCTCAAGAATTATTTGATGGGATGAGCGAGAAAGATGATGTTACATATGGCTCATTAGTTTCCGGGTACATGTTTCATGGGTTTGTTGATAAAGCCATGGATATTTTCCGAGAATGTACCGACCTAAGCTTAAGTACTTGGAATGCTATGATTTCGGGTCTGGTTCAGAACAATCGGCATGAGGCTGCCATAGAATTAGTTCGTGAAATGCAGGCATGTGGTTTCAAAACAAATACCGTGACGTTGTCAAGTGTTCTTCCTGCAATTTCATATTTCTCAAATTTAAAAGTAGGGAAAGAAGTACATGCTCATTCAGTCAGAAACAATTTTGATTGGAATATCTATGTTGCAACTGCTATTATTGATACTTATGCAAAGTCGGGGTTTCTTCCTGGGGCACAACAGGTTTTTGATCAATCAAAATATAAGAGTTTGGTCATTTGGACAGCAATAATCTCAGCTTATGCTGCCCATGGAGATGCTTATGTGTCTATTGGTCTGTTTTACAAGATGCTTAGTACTGGGATACAGCCAGATGAAGTAACATTTACAGCAGTATTAACAGCTTGTTCTCATTCTGGAGTGGTGGATGAAGCTTGGAAAATCTTTAAGGCCATGTTTCCGGTATACGGTATTCACCCTTCGGTTGAGCACTATGCATGCATGGTTGGTGTTCTTAGCCGGGCAGGGAGACTCACTGAAGCTGCAGAGTTAATACAAAACATGTCAATCGAGCCAAGTGCTAAAGTTTGGGGTGCATTACTTAATGGGGCTTCAGTTGCTCGTAATGTTGAATTGGGAAAGTTTGTTTGTGACCATCTATTTCAGATGGAGCCTGAGAATACCGGGAACTATATCATTATGGCAAATTTATATTCACAAGCTGGGAGATGGGAAGAAGCTGATAAGGTCAGGGAAAGAATGAAAGAAGTTGGATTACAGAAAATTCCTGGTATTAGCTGGATTGAAACAAGTGATGGATTACACAGCTTCATAGCAAGGGATGCATCTAATGTAAGAACTGAAGCGATTTATGAAATACTTGAAGGATTGCTAGGATTGATGAAAGAGAAAGGGTATGTTTTGCAGGATGAATTAGATGAGGAGAGTGTCAATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CDP-OH_P_transf PPR PPR_2

Protein Analysis

666

Amino Acids

74.59

Weight (kDa)

5.66

Isoelectric Point (pI)

38.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	202 - 251	9e-08	PPR repeat family
PPR	PF01535	205 - 232	1.2e-07	PPR repeat
PPR_2	PF13041	338 - 379	4.5e-09	PPR repeat family
PPR	PF01535	338 - 368	1.9e-07	PPR repeat
PPR_2	PF13041	437 - 484	5.8e-08	PPR repeat family
PPR_long	PF17177	452 - 536	1.9e-06	Pentacotripeptide-repeat region of PRORP
E_motif	PF20431	556 - 616	2.9e-20	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013262)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37310
fragaria_vesca	FvH4_6g14880
malus_domestica	MD04G1110700.v1.1 MD12G1130100.v1.1 MD15G1361800.v1.1
pyrus_communis	pycom04g10440 pycom12g12620
rosa_chinensis	RchiOBHm_Chr3g0468091
rosa_laevigata	RLG00000024450
rosa_multiflora	Rmu_co8293603.1_g000001 Rmu_co8334519.1_g000001
rosa_roxburghii	Rroxscaffold_6G00413060
rosa_rugosa	Rorug03G0092600
rosa_samantha	Rh3AG141000 Rh3BG162500 Rh3CG162300 Rh3DG163000
rosa_wichuraiana	Rw3G013320

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1506
AccII	CGCG	2 cut(s)	63, 148
AciI	CCGC	6 cut(s)	102, 112, 136, 139, 146, 172
AcoI	YGGCCR	3 cut(s)	109, 369, 573
AcsI	RAATTY	6 cut(s)	279, 622, 770, 1159, 1747, 1824
AcuI	CTGAAG	3 cut(s)	1599, 1638, 1923
AdeI	CACNNNGTG	1 cut(s)	268
AfaI	GTAC	6 cut(s)	753, 947, 997, 1015, 1182, 1399
AfiI	CCNNNNNNNGG	2 cut(s)	47, 1508
AflII	CTTAAG	1 cut(s)	1009
AflIII	ACRYGT	3 cut(s)	422, 948, 1602
AgsI	TTSAA	8 cut(s)	22, 29, 71, 799, 1105, 1673, 1847, 1925
AjnI	CCWGG	4 cut(s)	575, 617, 1270, 1828
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AloI	GAACNNNNNNTCC	2 cut(s)	768, 800
Alw21I	GWGCWC	2 cut(s)	883, 1533
Alw26I	GTCTC	1 cut(s)	1564
Ama87I	CYCGRG	1 cut(s)	550
AoxI	GGCC	9 cut(s)	36, 73, 88, 109, 153, 369, 573, 710, 1491
ApeKI	GCWGC	4 cut(s)	160, 1064, 1346, 1583
ApoI	RAATTY	6 cut(s)	279, 622, 770, 1159, 1747, 1824
Asp700I	GAANNNNTTC	2 cut(s)	296, 1077
AspLEI	GCGC	2 cut(s)	65, 439
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	4 cut(s)	198, 943, 1562, 1726
AsuHPI	GGTGA	1 cut(s)	1508
AvaI	CYCGRG	1 cut(s)	550
BaeGI	GKGCMC	1 cut(s)	1279
BalI	TGGCCA	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	389
BarI	GAAGNNNNNNTAC	4 cut(s)	1504, 1536, 1800, 1832
Bbv12I	GWGCWC	2 cut(s)	883, 1533
BbvI	GCAGC	4 cut(s)	172, 1051, 1333, 1570
BccI	CCATC	7 cut(s)	565, 685, 890, 1702, 1704, 1764, 1850
BceAI	ACGGC	2 cut(s)	64, 103
BcgI	CGANNNNNNTGC	4 cut(s)	190, 224, 1601, 1635
BciT130I	CCWGG	4 cut(s)	577, 619, 1272, 1830
BciVI	GTATCC	1 cut(s)	1398
BclI	TGATCA	1 cut(s)	1291
BcnI	CCSGG	4 cut(s)	198, 943, 1562, 1726
BcoDI	GTCTC	1 cut(s)	1564
BfaI	CTAG	2 cut(s)	237, 1934
BfmI	CTRYAG	2 cut(s)	726, 1584
BfoI	RGCGCY	1 cut(s)	440
BfrI	CTTAAG	1 cut(s)	1009
BfuI	GTATCC	1 cut(s)	1398
BisI	GCNGC	8 cut(s)	102, 112, 139, 146, 161, 1065, 1347, 1584
BlsI	GCNGC	8 cut(s)	103, 113, 140, 147, 162, 1066, 1348, 1585
BmcAI	AGTACT	2 cut(s)	1015, 1399
Bme1390I	CCNGG	8 cut(s)	198, 577, 619, 943, 1272, 1562, 1726, 1830
BmeT110I	CYCGRG	1 cut(s)	550
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	39, 1713
BmrFI	CCNGG	8 cut(s)	198, 577, 619, 943, 1272, 1562, 1726, 1830
BmrI	ACTGGG	1 cut(s)	1410
BmsI	GCATC	4 cut(s)	1348, 1380, 1873, 1895
BmuI	ACTGGG	1 cut(s)	1410
BplI	GAGNNNNNCTC	2 cut(s)	371, 403
BpmI	CTGGAG	1 cut(s)	1479
Bpu10I	CCTNAGC	2 cut(s)	471, 1004
BpuEI	CTTGAG	1 cut(s)	867
BpuMI	CCSGG	4 cut(s)	198, 943, 1562, 1726
BsaJI	CCNNGG	4 cut(s)	372, 975, 1271, 1351
BsaWI	WCCGGW	2 cut(s)	455, 1501
Bsc4I	CCNNNNNNNGG	2 cut(s)	47, 1508
Bse1I	ACTGG	2 cut(s)	759, 1405
Bse3DI	GCAATG	1 cut(s)	481
BseBI	CCWGG	4 cut(s)	577, 619, 1272, 1830
BseDI	CCNNGG	4 cut(s)	372, 975, 1271, 1351
BseGI	GGATG	7 cut(s)	54, 520, 576, 906, 1474, 1888, 1975
BseLI	CCNNNNNNNGG	2 cut(s)	47, 1508
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	4 cut(s)	347, 659, 1350, 1707
BseNI	ACTGG	2 cut(s)	759, 1405
BseRI	GAGGAG	1 cut(s)	1997
BseSI	GKGCMC	1 cut(s)	1279
BseXI	GCAGC	4 cut(s)	172, 1051, 1333, 1570
BseYI	CCCAGC	4 cut(s)	439, 635, 650, 1763
Bsh1236I	CGCG	2 cut(s)	63, 148
BshFI	GGCC	9 cut(s)	38, 75, 90, 111, 155, 371, 575, 712, 1493
BsiHKAI	GWGCWC	2 cut(s)	883, 1533
BsiHKCI	CYCGRG	1 cut(s)	550
BsiSI	CCGG	8 cut(s)	198, 392, 456, 599, 942, 1502, 1561, 1725
BslI	CCNNNNNNNGG	2 cut(s)	47, 1508
BsmAI	GTCTC	1 cut(s)	1564
BsmI	GAATGC	2 cut(s)	600, 1027
BsnI	GGCC	9 cut(s)	38, 75, 90, 111, 155, 371, 575, 712, 1493
BsoBI	CYCGRG	1 cut(s)	550
Bsp1286I	GDGCHC	4 cut(s)	389, 883, 1279, 1533
Bsp1407I	TGTACA	1 cut(s)	751
Bsp143I	GATC	2 cut(s)	763, 1291
Bsp19I	CCATGG	3 cut(s)	372, 975, 1351
BspACI	CCGC	6 cut(s)	102, 112, 136, 139, 146, 172
BspANI	GGCC	9 cut(s)	38, 75, 90, 111, 155, 371, 575, 712, 1493
BspCNI	CTCAG	4 cut(s)	348, 658, 1349, 1708
BspFNI	CGCG	2 cut(s)	63, 148
BspLI	GGNNCC	2 cut(s)	39, 1713
BspMAI	CTGCAG	2 cut(s)	730, 1588
BspTI	CTTAAG	1 cut(s)	1009
BsrDI	GCAATG	1 cut(s)	481
BsrGI	TGTACA	1 cut(s)	751
BsrI	ACTGG	2 cut(s)	759, 1405
BssECI	CCNNGG	4 cut(s)	372, 975, 1271, 1351
BssMI	GATC	2 cut(s)	763, 1291
BssNAI	GTATAC	1 cut(s)	1507
BssT1I	CCWWGG	3 cut(s)	372, 975, 1351
Bst1107I	GTATAC	1 cut(s)	1507
Bst2UI	CCWGG	4 cut(s)	577, 619, 1272, 1830
Bst4CI	ACNGT	3 cut(s)	756, 1117, 1511
Bst6I	CTCTTC	2 cut(s)	122, 188
BstAFI	CTTAAG	1 cut(s)	1009
BstAPI	GCANNNNNTGC	1 cut(s)	1883
BstAUI	TGTACA	1 cut(s)	751
BstC8I	GCNNGC	5 cut(s)	143, 389, 744, 1092, 1540
BstDEI	CTNAG	8 cut(s)	356, 471, 645, 1004, 1336, 1394, 1556, 1716
BstDSI	CCRYGG	3 cut(s)	372, 975, 1351
BstF5I	GGATG	7 cut(s)	54, 520, 576, 906, 1474, 1888, 1975
BstFNI	CGCG	2 cut(s)	63, 148
BstH2I	RGCGCY	1 cut(s)	440
BstHHI	GCGC	2 cut(s)	65, 439
BstKTI	GATC	2 cut(s)	766, 1294
BstMAI	GTCTC	1 cut(s)	1564
BstMBI	GATC	2 cut(s)	763, 1291
BstMWI	GCNNNNNNNGC	4 cut(s)	308, 1346, 1658, 1883
BstNI	CCWGG	4 cut(s)	577, 619, 1272, 1830
BstNSI	RCATGY	7 cut(s)	343, 750, 952, 1098, 1187, 1542, 1606
BstSCI	CCNGG	8 cut(s)	196, 575, 617, 941, 1270, 1560, 1724, 1828
BstSFI	CTRYAG	2 cut(s)	726, 1584
BstSLI	GKGCMC	1 cut(s)	1279
BstUI	CGCG	2 cut(s)	63, 148
BstV1I	GCAGC	4 cut(s)	172, 1051, 1333, 1570
BstZ17I	GTATAC	1 cut(s)	1507
BsuI	GTATCC	1 cut(s)	1398
BsuRI	GGCC	9 cut(s)	38, 75, 90, 111, 155, 371, 575, 712, 1493
BtgI	CCRYGG	3 cut(s)	372, 975, 1351
BtsCI	GGATG	7 cut(s)	54, 520, 576, 906, 1474, 1888, 1975
BtsIMutI	CAGTG	2 cut(s)	766, 1575
Cac8I	GCNNGC	5 cut(s)	143, 389, 744, 1092, 1540
CfoI	GCGC	2 cut(s)	65, 439
Cfr13I	GGNCC	1 cut(s)	37
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	6 cut(s)	752, 946, 996, 1014, 1181, 1398
CviQI	GTAC	6 cut(s)	752, 946, 996, 1014, 1181, 1398
DdeI	CTNAG	8 cut(s)	356, 471, 645, 1004, 1336, 1394, 1556, 1716
DpnI	GATC	2 cut(s)	765, 1293
DpnII	GATC	2 cut(s)	763, 1291
DraI	TTTAAA	1 cut(s)	1164
DraIII	CACNNNGTG	1 cut(s)	268
EaeI	YGGCCR	3 cut(s)	109, 369, 573
Eam1104I	CTCTTC	2 cut(s)	122, 188
EarI	CTCTTC	2 cut(s)	122, 188
Eco130I	CCWWGG	3 cut(s)	372, 975, 1351
Eco147I	AGGCCT	2 cut(s)	75, 712
Eco24I	GRGCYC	1 cut(s)	389
Eco32I	GATATC	1 cut(s)	610
Eco57I	CTGAAG	3 cut(s)	1599, 1638, 1923
Eco88I	CYCGRG	1 cut(s)	550
EcoRI	GAATTC	1 cut(s)	622
EcoRII	CCWGG	4 cut(s)	575, 617, 1270, 1828
EcoRV	GATATC	1 cut(s)	610
EcoT14I	CCWWGG	3 cut(s)	372, 975, 1351
EcoT22I	ATGCAT	3 cut(s)	1540, 1544, 1888
EcoT38I	GRGCYC	1 cut(s)	389
ErhI	CCWWGG	3 cut(s)	372, 975, 1351
FauI	CCCGC	1 cut(s)	179
FauNDI	CATATG	1 cut(s)	925
FbaI	TGATCA	1 cut(s)	1291
FblI	GTMKAC	1 cut(s)	1506
Fnu4HI	GCNGC	8 cut(s)	102, 112, 139, 146, 161, 1065, 1347, 1584
FokI	GGATG	7 cut(s)	41, 527, 583, 913, 1481, 1895, 1982
FriOI	GRGCYC	1 cut(s)	389
Fsp4HI	GCNGC	8 cut(s)	102, 112, 139, 146, 161, 1065, 1347, 1584
FspBI	CTAG	2 cut(s)	237, 1934
GlaI	GCGC	2 cut(s)	64, 438
GluI	GCNGC	8 cut(s)	102, 112, 139, 146, 161, 1065, 1347, 1584
GsaI	CCCAGC	4 cut(s)	443, 639, 654, 1767
GsuI	CTGGAG	1 cut(s)	1479
HaeII	RGCGCY	1 cut(s)	440
HaeIII	GGCC	9 cut(s)	38, 75, 90, 111, 155, 371, 575, 712, 1493
HapII	CCGG	8 cut(s)	198, 392, 456, 599, 942, 1502, 1561, 1725
HgaI	GACGC	1 cut(s)	137
HhaI	GCGC	2 cut(s)	65, 439
Hin6I	GCGC	2 cut(s)	63, 437
HinP1I	GCGC	2 cut(s)	63, 437
HindIII	AAGCTT	2 cut(s)	1006, 1473
HinfI	GANTC	5 cut(s)	380, 509, 695, 805, 1572
HpaII	CCGG	8 cut(s)	198, 392, 456, 599, 942, 1502, 1561, 1725
HphI	GGTGA	1 cut(s)	1508
Hpy166II	GTNNAC	3 cut(s)	9, 752, 1507
Hpy188I	TCNGA	7 cut(s)	357, 463, 514, 989, 1047, 1199, 1707
Hpy188III	TCNNGA	5 cut(s)	237, 552, 884, 1082, 1458
Hpy8I	GTNNAC	3 cut(s)	9, 752, 1507
Hpy99I	CGWCG	2 cut(s)	89, 278
HpyAV	CCTTC	5 cut(s)	77, 86, 427, 1530, 1919
HpyCH4III	ACNGT	3 cut(s)	756, 1117, 1511
HpyCH4IV	ACGT	2 cut(s)	422, 1121
HpyF10VI	GCNNNNNNNGC	4 cut(s)	308, 1346, 1658, 1883
HpyF3I	CTNAG	8 cut(s)	356, 471, 645, 1004, 1336, 1394, 1556, 1716
HpySE526I	ACGT	2 cut(s)	422, 1121
HspAI	GCGC	2 cut(s)	63, 437
Ksp22I	TGATCA	1 cut(s)	1291
Kzo9I	GATC	2 cut(s)	763, 1291
LmnI	GCTCC	2 cut(s)	168, 1711
Lsp1109I	GCAGC	4 cut(s)	172, 1051, 1333, 1570
LweI	GCATC	4 cut(s)	1348, 1380, 1873, 1895
MaeI	CTAG	2 cut(s)	237, 1934
MaeII	ACGT	2 cut(s)	422, 1121
MaeIII	GTNAC	6 cut(s)	721, 806, 919, 1117, 1420, 1691
MalI	GATC	2 cut(s)	765, 1293
MboI	GATC	2 cut(s)	763, 1291
MboII	GAAGA	5 cut(s)	109, 175, 1127, 1259, 1787
MhlI	GDGCHC	4 cut(s)	389, 883, 1279, 1533
MlsI	TGGCCA	1 cut(s)	575
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	4 cut(s)	389, 704, 814, 1566
MmeI	TCCRAC	2 cut(s)	82, 1792
Mox20I	TGGCCA	1 cut(s)	575
Mph1103I	ATGCAT	3 cut(s)	1540, 1544, 1888
MroXI	GAANNNNTTC	2 cut(s)	296, 1077
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	7 cut(s)	768, 1010, 1163, 1439, 1488, 1592, 1644
MslI	CAYNNNNRTG	2 cut(s)	815, 1356
Msp20I	TGGCCA	1 cut(s)	575
MspCI	CTTAAG	1 cut(s)	1009
MspI	CCGG	8 cut(s)	198, 392, 456, 599, 942, 1502, 1561, 1725
MspR9I	CCNGG	8 cut(s)	198, 577, 619, 943, 1272, 1562, 1726, 1830
Mva1269I	GAATGC	2 cut(s)	600, 1027
MvaI	CCWGG	4 cut(s)	577, 619, 1272, 1830
MvnI	CGCG	2 cut(s)	63, 148
MwoI	GCNNNNNNNGC	4 cut(s)	308, 1346, 1658, 1883
NciI	CCSGG	4 cut(s)	198, 943, 1562, 1726
NcoI	CCATGG	3 cut(s)	372, 975, 1351
NdeI	CATATG	1 cut(s)	925
NdeII	GATC	2 cut(s)	763, 1291
NlaIV	GGNNCC	2 cut(s)	39, 1713
NmeAIII	GCCGAG	1 cut(s)	14
NmuCI	GTSAC	4 cut(s)	721, 806, 1117, 1691
NsiI	ATGCAT	3 cut(s)	1540, 1544, 1888
NspI	RCATGY	7 cut(s)	343, 750, 952, 1098, 1187, 1542, 1606
PaeI	GCATGC	1 cut(s)	1542
PaeR7I	CTCGAG	1 cut(s)	550
PceI	AGGCCT	2 cut(s)	75, 712
PciI	ACATGT	2 cut(s)	948, 1602
PctI	GAATGC	2 cut(s)	600, 1027
PdmI	GAANNNNTTC	2 cut(s)	296, 1077
PfeI	GAWTC	1 cut(s)	509
PflFI	GACNNNGTC	1 cut(s)	1123
PfoI	TCCNGGA	1 cut(s)	617
PkrI	GCNGC	8 cut(s)	103, 113, 140, 147, 162, 1066, 1348, 1585
PleI	GAGTC	4 cut(s)	388, 703, 813, 1566
PpsI	GAGTC	4 cut(s)	388, 703, 813, 1566
PscI	ACATGT	2 cut(s)	948, 1602
Psp6I	CCWGG	4 cut(s)	575, 617, 1270, 1828
PspFI	CCCAGC	4 cut(s)	439, 635, 650, 1763
PspGI	CCWGG	4 cut(s)	575, 617, 1270, 1828
PspN4I	GGNNCC	2 cut(s)	39, 1713
PspPI	GGNCC	1 cut(s)	37
PstI	CTGCAG	2 cut(s)	730, 1588
PsyI	GACNNNGTC	1 cut(s)	1123
RsaI	GTAC	6 cut(s)	753, 947, 997, 1015, 1182, 1399
RsaNI	GTAC	6 cut(s)	752, 946, 996, 1014, 1181, 1398
RseI	CAYNNNNRTG	2 cut(s)	815, 1356
SaqAI	TTAA	7 cut(s)	768, 1010, 1163, 1439, 1488, 1592, 1644
SatI	GCNGC	8 cut(s)	102, 112, 139, 146, 161, 1065, 1347, 1584
Sau3AI	GATC	2 cut(s)	763, 1291
Sau96I	GGNCC	1 cut(s)	37
ScaI	AGTACT	2 cut(s)	1015, 1399
SchI	GAGTC	4 cut(s)	389, 704, 814, 1566
ScrFI	CCNGG	8 cut(s)	198, 577, 619, 943, 1272, 1562, 1726, 1830
SduI	GDGCHC	4 cut(s)	389, 883, 1279, 1533
SfaNI	GCATC	4 cut(s)	1348, 1380, 1873, 1895
SfcI	CTRYAG	2 cut(s)	726, 1584
Sfr274I	CTCGAG	1 cut(s)	550
SlaI	CTCGAG	1 cut(s)	550
SmiMI	CAYNNNNRTG	2 cut(s)	815, 1356
SmlI	CTYRAG	3 cut(s)	550, 882, 1009
SmoI	CTYRAG	3 cut(s)	550, 882, 1009
SphI	GCATGC	1 cut(s)	1542
SseBI	AGGCCT	2 cut(s)	75, 712
SsiI	CCGC	6 cut(s)	102, 112, 136, 139, 146, 172
SspMI	CTAG	2 cut(s)	237, 1934
StuI	AGGCCT	2 cut(s)	75, 712
StyD4I	CCNGG	8 cut(s)	196, 575, 617, 941, 1270, 1560, 1724, 1828
StyI	CCWWGG	3 cut(s)	372, 975, 1351
TaaI	ACNGT	3 cut(s)	756, 1117, 1511
TaiI	ACGT	2 cut(s)	425, 1124
TaqI	TCGA	7 cut(s)	93, 273, 507, 551, 626, 873, 1611
TatI	WGTACW	4 cut(s)	751, 1013, 1180, 1397
TauI	GCSGC	4 cut(s)	104, 114, 141, 148
TfiI	GAWTC	1 cut(s)	509
Tru1I	TTAA	7 cut(s)	768, 1010, 1163, 1439, 1488, 1592, 1644
Tru9I	TTAA	7 cut(s)	768, 1010, 1163, 1439, 1488, 1592, 1644
TscAI	CASTG	2 cut(s)	766, 1582
TseFI	GTSAC	4 cut(s)	721, 806, 1117, 1691
TseI	GCWGC	4 cut(s)	160, 1064, 1346, 1583
Tsp45I	GTSAC	4 cut(s)	721, 806, 1117, 1691
TspGWI	ACGGA	1 cut(s)	178
TspRI	CASTG	2 cut(s)	766, 1582
Tth111I	GACNNNGTC	1 cut(s)	1123
Vha464I	CTTAAG	1 cut(s)	1009
XapI	RAATTY	6 cut(s)	279, 622, 770, 1159, 1747, 1824
XbaI	TCTAGA	1 cut(s)	236
XceI	RCATGY	7 cut(s)	343, 750, 952, 1098, 1187, 1542, 1606
XhoI	CTCGAG	1 cut(s)	550
XmiI	GTMKAC	1 cut(s)	1506
XmnI	GAANNNNTTC	2 cut(s)	296, 1077
XspI	CTAG	2 cut(s)	237, 1934
ZrmI	AGTACT	2 cut(s)	1015, 1399
Zsp2I	ATGCAT	3 cut(s)	1540, 1544, 1888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.