Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0011576

Physical Location & Seq

Genomic Coordinates Forward (+)

19808543 .. 19812513

Gene Structure 3971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1112400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGATAAGTATCGTAGCTATTACTGTTTTTGTCAATATTATTATTACTTCGGTAATAAAATATATGCAGGCAATGAATTTCTTTGCAGGGTTATTGTTACTTCTGATGCCTGAGGAAAATGCCTTTTGGACTTTGGTTGGTATAATTGATGACTACTTTGATGGCTACTATACTGAGGAAATGACAGAATCTCAGGTGTTGAATCATCTGGATTTCTTAGGAGTCCAGGTGGGATGGATCATTGGACCTTGGTTCCTTTCCATATTTGTGAATATGATTCCTTGGGGAAGTGTTATTCGAGTTTGGGATGTGCTTCTGTTTGAAGGAAATCGTGTTATGCTATTTCGAACAGCACTAGCATTGATGGAGTTATATGGGCCAGCGTTAGTTACCACTAAGGATGCAGGAGATGCTATTACTTTATTGCAGTCTCTTGCTGGCTCAACATTTGATAGCAGCCAACTTGTTTTGACTGCTTGCATGGGTTTTTTGGCTGTAACTGAAAGTAGATTGAAAGAGTTGAGAGATAAGCACCGGCCAGCTGTATTAGCAATAGTTGAGGAAAGATTTAAACAGGGTCAGGCTTGGAAGGATTCCAAAGGACTCGCATCCAAGCTGTATAGTTTTAAGTGTGATCCTAGCATAATAGAAGAGAAAGGTCCTACTGAAGAAGGAAGTACAGATAGAGATGTATCTCGCTCGAAATATGGCTCTTGTAATCTGGCTGAATTCCTTAGTGGCCTATCTGTATCAGAAGTAGATTCTTTACCAGATATTCAGGATCAGGTCGATTGGTTGAAGGTTGAGGTATGCAGGGTGCTGGAGGAGAAAAGATCTGCTGTGCTCATCGTGGCTCCTGCTCTTTCCAGGGCTAAGGAGTTAGAGACAGCACTTATGGAGATAGTCGAGCTCGATAATCGACGAGAATTAAGTGCAAGGGTCTTGATGTGGATGGAGCAAGAGCAAAAGGTTACTGAAGATGCCCAACTAAGAGCCGAGCAAGAAGCAGCTGCTCAGAAAAGTGCAGTTAATGTGCTTCAGAACATGAATATATCTATTTCTCAACAGAATAGCGTATATGCAGGAAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

365

Amino Acids

40.78

Weight (kDa)

4.71

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	19 - 127	4.7e-19	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	63 - 144	1.3e-06	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15020
malus_domestica	MD04G1112400.v1.1 MD12G1129300.v1.1
prunus_persica	Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1
pyrus_communis	pycom04g10320 pycom12g12560
rosa_chinensis	RchiOBHm_Chr3g0468201
rosa_laevigata	RLG00000024442
rosa_multiflora	Rmu_sc0004524.1_g000007
rosa_roxburghii	Rroxscaffold_6G00412920
rosa_rugosa	Rorug03G0094100
rosa_samantha	Rh3AG141800 Rh3BG163200 Rh3CG163300 Rh3DG163900
rosa_wichuraiana	Rw3G013420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	245, 629, 789
AcoI	YGGCCR	1 cut(s)	536
AcsI	RAATTY	2 cut(s)	76, 728
AcuI	CTGAAG	3 cut(s)	687, 996, 1022
AfaI	GTAC	1 cut(s)	679
AgsI	TTSAA	4 cut(s)	202, 323, 514, 799
AjnI	CCWGG	2 cut(s)	225, 866
AluBI	AGCT	5 cut(s)	17, 542, 616, 910, 1010
AluI	AGCT	5 cut(s)	17, 542, 616, 910, 1010
Alw21I	GWGCWC	2 cut(s)	846, 912
Alw26I	GTCTC	2 cut(s)	435, 878
AlwI	GGATC	3 cut(s)	245, 629, 789
AoxI	GGCC	3 cut(s)	377, 536, 739
ApeKI	GCWGC	3 cut(s)	456, 1007, 1010
ApoI	RAATTY	2 cut(s)	76, 728
AspS9I	GGNCC	3 cut(s)	245, 377, 659
AsuII	TTCGAA	1 cut(s)	346
AvaII	GGWCC	2 cut(s)	245, 659
AxyI	CCTNAGG	1 cut(s)	111
BanII	GRGCYC	1 cut(s)	912
Bbv12I	GWGCWC	2 cut(s)	846, 912
BbvI	GCAGC	3 cut(s)	468, 997, 1019
BccI	CCATC	4 cut(s)	155, 228, 358, 946
BciT130I	CCWGG	2 cut(s)	227, 868
BcoDI	GTCTC	2 cut(s)	435, 878
BfaI	CTAG	2 cut(s)	356, 639
BglII	AGATCT	1 cut(s)	833
BisI	GCNGC	3 cut(s)	457, 1008, 1011
BlsI	GCNGC	3 cut(s)	458, 1009, 1012
Bme1390I	CCNGG	2 cut(s)	227, 868
Bme18I	GGWCC	2 cut(s)	245, 659
BmgT120I	GGNCC	3 cut(s)	245, 377, 659
BmiI	GGNNCC	2 cut(s)	254, 855
BmrFI	CCNGG	2 cut(s)	227, 868
BmsI	GCATC	5 cut(s)	96, 391, 400, 617, 970
BpmI	CTGGAG	1 cut(s)	842
Bpu10I	CCTNAGC	1 cut(s)	873
Bpu14I	TTCGAA	1 cut(s)	346
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	3 cut(s)	248, 281, 867
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bse118I	RCCGGY	1 cut(s)	534
Bse21I	CCTNAGG	1 cut(s)	111
Bse3DI	GCAATG	1 cut(s)	78
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	227, 868
BseDI	CCNNGG	3 cut(s)	248, 281, 867
BseGI	GGATG	5 cut(s)	239, 313, 406, 608, 957
BseJI	GATNNNNATC	1 cut(s)	8
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	4 cut(s)	102, 165, 206, 1028
BseRI	GAGGAG	1 cut(s)	839
BseXI	GCAGC	3 cut(s)	468, 997, 1019
BsgI	GTGCAG	1 cut(s)	1044
BshFI	GGCC	3 cut(s)	379, 538, 741
BsiHKAI	GWGCWC	2 cut(s)	846, 912
BsiSI	CCGG	1 cut(s)	535
BsmAI	GTCTC	2 cut(s)	435, 878
BsnI	GGCC	3 cut(s)	379, 538, 741
Bsp119I	TTCGAA	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	846, 912
Bsp143I	GATC	4 cut(s)	237, 634, 781, 833
BspANI	GGCC	3 cut(s)	379, 538, 741
BspCNI	CTCAG	4 cut(s)	103, 166, 205, 1027
BspLI	GGNNCC	2 cut(s)	254, 855
BspPI	GGATC	3 cut(s)	245, 629, 789
BspT104I	TTCGAA	1 cut(s)	346
BsrDI	GCAATG	1 cut(s)	78
BsrFI	RCCGGY	1 cut(s)	534
BssAI	RCCGGY	1 cut(s)	534
BssECI	CCNNGG	3 cut(s)	248, 281, 867
BssMI	GATC	4 cut(s)	237, 634, 781, 833
BssT1I	CCWWGG	2 cut(s)	248, 281
Bst2UI	CCWGG	2 cut(s)	227, 868
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	645
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstBI	TTCGAA	1 cut(s)	346
BstC8I	GCNNGC	5 cut(s)	69, 381, 439, 478, 540
BstDEI	CTNAG	9 cut(s)	111, 174, 192, 217, 396, 734, 873, 989, 1014
BstF5I	GGATG	5 cut(s)	239, 313, 406, 608, 957
BstKTI	GATC	4 cut(s)	240, 637, 784, 836
BstMAI	GTCTC	2 cut(s)	435, 878
BstMBI	GATC	4 cut(s)	237, 634, 781, 833
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 548
BstNI	CCWGG	2 cut(s)	227, 868
BstSCI	CCNGG	2 cut(s)	225, 866
BstV1I	GCAGC	3 cut(s)	468, 997, 1019
BstX2I	RGATCY	1 cut(s)	833
BstYI	RGATCY	1 cut(s)	833
Bsu36I	CCTNAGG	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	379, 538, 741
BtsCI	GGATG	5 cut(s)	239, 313, 406, 608, 957
Cac8I	GCNNGC	5 cut(s)	69, 381, 439, 478, 540
Cfr10I	RCCGGY	1 cut(s)	534
Cfr13I	GGNCC	3 cut(s)	245, 377, 659
Csp6I	GTAC	1 cut(s)	678
CviAII	CATG	2 cut(s)	481, 1045
CviQI	GTAC	1 cut(s)	678
DdeI	CTNAG	9 cut(s)	111, 174, 192, 217, 396, 734, 873, 989, 1014
DpnI	GATC	4 cut(s)	239, 636, 783, 835
DpnII	GATC	4 cut(s)	237, 634, 781, 833
DraI	TTTAAA	1 cut(s)	571
EaeI	YGGCCR	1 cut(s)	536
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Ecl136II	GAGCTC	1 cut(s)	910
Eco130I	CCWWGG	2 cut(s)	248, 281
Eco24I	GRGCYC	1 cut(s)	912
Eco47I	GGWCC	2 cut(s)	245, 659
Eco53kI	GAGCTC	1 cut(s)	910
Eco57I	CTGAAG	3 cut(s)	687, 996, 1022
Eco81I	CCTNAGG	1 cut(s)	111
EcoICRI	GAGCTC	1 cut(s)	910
EcoO109I	RGGNCCY	1 cut(s)	659
EcoRI	GAATTC	1 cut(s)	728
EcoRII	CCWGG	2 cut(s)	225, 866
EcoT14I	CCWWGG	2 cut(s)	248, 281
EcoT38I	GRGCYC	1 cut(s)	912
ErhI	CCWWGG	2 cut(s)	248, 281
FaeI	CATG	2 cut(s)	484, 1048
FatI	CATG	2 cut(s)	480, 1044
Fnu4HI	GCNGC	3 cut(s)	457, 1008, 1011
FokI	GGATG	5 cut(s)	246, 320, 413, 595, 964
FriOI	GRGCYC	1 cut(s)	912
Fsp4HI	GCNGC	3 cut(s)	457, 1008, 1011
FspBI	CTAG	2 cut(s)	356, 639
GluI	GCNGC	3 cut(s)	457, 1008, 1011
GsuI	CTGGAG	1 cut(s)	842
HaeIII	GGCC	3 cut(s)	379, 538, 741
HapII	CCGG	1 cut(s)	535
Hin1II	CATG	2 cut(s)	484, 1048
HinfI	GANTC	7 cut(s)	188, 202, 222, 277, 593, 603, 761
HpaII	CCGG	1 cut(s)	535
Hpy188I	TCNGA	4 cut(s)	105, 754, 1017, 1041
Hpy188III	TCNNGA	3 cut(s)	209, 779, 943
Hpy99I	CGWCG	1 cut(s)	924
HpyAV	CCTTC	4 cut(s)	317, 583, 665, 793
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	9 cut(s)	67, 86, 404, 427, 480, 813, 935, 1025, 1082
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 548
HpyF3I	CTNAG	9 cut(s)	111, 174, 192, 217, 396, 734, 873, 989, 1014
Hsp92II	CATG	2 cut(s)	484, 1048
Kzo9I	GATC	4 cut(s)	237, 634, 781, 833
LmnI	GCTCC	2 cut(s)	859, 955
Lsp1109I	GCAGC	3 cut(s)	468, 997, 1019
LweI	GCATC	5 cut(s)	96, 391, 400, 617, 970
MaeI	CTAG	2 cut(s)	356, 639
MaeIII	GTNAC	4 cut(s)	96, 388, 496, 970
MalI	GATC	4 cut(s)	239, 636, 783, 835
MboI	GATC	4 cut(s)	237, 634, 781, 833
MboII	GAAGA	3 cut(s)	662, 680, 989
MflI	RGATCY	1 cut(s)	833
MhlI	GDGCHC	2 cut(s)	846, 912
MluCI	AATT	4 cut(s)	76, 144, 728, 926
MlyI	GAGTC	2 cut(s)	231, 597
MnlI	CCTC	5 cut(s)	106, 169, 553, 799, 817
MseI	TTAA	4 cut(s)	570, 627, 929, 1029
MslI	CAYNNNNRTG	1 cut(s)	266
MspA1I	CMGCKG	2 cut(s)	542, 1010
MspI	CCGG	1 cut(s)	535
MspR9I	CCNGG	2 cut(s)	227, 868
MvaI	CCWGG	2 cut(s)	227, 868
MwoI	GCNNNNNNNGC	2 cut(s)	410, 548
NdeII	GATC	4 cut(s)	237, 634, 781, 833
NlaIII	CATG	2 cut(s)	484, 1048
NlaIV	GGNNCC	2 cut(s)	254, 855
NmeAIII	GCCGAG	1 cut(s)	1021
NspV	TTCGAA	1 cut(s)	346
PfeI	GAWTC	5 cut(s)	188, 202, 277, 593, 761
PkrI	GCNGC	3 cut(s)	458, 1009, 1012
PleI	GAGTC	2 cut(s)	230, 597
PpsI	GAGTC	2 cut(s)	230, 597
PpuMI	RGGWCCY	1 cut(s)	659
Psp124BI	GAGCTC	1 cut(s)	912
Psp5II	RGGWCCY	1 cut(s)	659
Psp6I	CCWGG	2 cut(s)	225, 866
PspGI	CCWGG	2 cut(s)	225, 866
PspN4I	GGNNCC	2 cut(s)	254, 855
PspPI	GGNCC	3 cut(s)	245, 377, 659
PspPPI	RGGWCCY	1 cut(s)	659
PsuI	RGATCY	1 cut(s)	833
PvuII	CAGCTG	2 cut(s)	542, 1010
RsaI	GTAC	1 cut(s)	679
RsaNI	GTAC	1 cut(s)	678
RseI	CAYNNNNRTG	1 cut(s)	266
SacI	GAGCTC	1 cut(s)	912
SaqAI	TTAA	4 cut(s)	570, 627, 929, 1029
SatI	GCNGC	3 cut(s)	457, 1008, 1011
Sau3AI	GATC	4 cut(s)	237, 634, 781, 833
Sau96I	GGNCC	3 cut(s)	245, 377, 659
SchI	GAGTC	2 cut(s)	231, 597
ScrFI	CCNGG	2 cut(s)	227, 868
SduI	GDGCHC	2 cut(s)	846, 912
SfaNI	GCATC	5 cut(s)	96, 391, 400, 617, 970
SfuI	TTCGAA	1 cut(s)	346
SinI	GGWCC	2 cut(s)	245, 659
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	4 cut(s)	76, 144, 728, 926
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	2 cut(s)	356, 639
SstI	GAGCTC	1 cut(s)	912
StyD4I	CCNGG	2 cut(s)	225, 866
StyI	CCWWGG	2 cut(s)	248, 281
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	7 cut(s)	298, 346, 701, 789, 906, 912, 919
TasI	AATT	4 cut(s)	76, 144, 728, 926
TatI	WGTACW	1 cut(s)	677
TfiI	GAWTC	5 cut(s)	188, 202, 277, 593, 761
Tru1I	TTAA	4 cut(s)	570, 627, 929, 1029
Tru9I	TTAA	4 cut(s)	570, 627, 929, 1029
TseI	GCWGC	3 cut(s)	456, 1007, 1010
TspDTI	ATGAA	2 cut(s)	89, 1061
VpaK11BI	GGWCC	2 cut(s)	245, 659
XapI	RAATTY	2 cut(s)	76, 728
XspI	CTAG	2 cut(s)	356, 639

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.