Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0011576

Physical Location & Seq

Genomic Coordinates Forward (+)

12459575 .. 12467232

Gene Structure 7658 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG141800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2538 bp

ATGTTGTTGTCCTTCTTGAGTAAGCGCTCGTTGGAGGCTGATTCCAGGGACGCCTATGGGTTTGCTTTGAGACCTCAATATGTACAAACATATCAAGAATACGCTCATATCTACAAGGAGGAGGAAGATGAACGATCAGATAAATGGAAGAATTTCCTTGAACATATAGAAAAATCTTCTCAGTCGTGCTCTCTTGAGAAGGCACATACAGAGGAATTGCCAGCTGAAGCTACAGAGCAGAAGGCATATAGAGAGGAACTTCAAGCTGAACCTACTGAGCAGAAAGCAGAGATAGTTTCTGAGAGCGATGAGGAAGGGAATGACAAAAGTAGTCTGAAATCTATTTCTGAAGGTTCATCAGAAAGAGATCCCAAAAAGGAGGCTCAACTTCCAAAAGAAACAGGAAAAAGTAAGGTCCAAACATGGAGCTTCATTAGGTCATCCCTTAGTTCCATTGAAAATATGATGAGCATTCGTGTTAGGAAACAAAAGAATATGAAAGATGAGCATATAGTTGTGGATAAAGACCATCTTCCATCAATAGAAGAAGTTCCTTCACAAGATGCTTTTGAGGATGGTCAAGAGGAAGACATTTATCTTGATGCCTCCAGTGGAGCAACTTCTGTAAGTAACAGAGAATCTGACGGATTGAAAGCTTCTGGGGAAGATGAGGTTGTGGATGGTGGTGTCTGTAACAGTGTGCAAGCTGATCAGACAAAAGAAGATGTGGCTAATGGGATCCATCCAGAACCTCTCTTTCCCTGGAACCAGGAACTGGAGTCCCTTGTTCATGGAGGAGTTCCAAGAGATCTCAGGGGAGAGGTATGGCAAGCTTTTGTAGGTGTGAAGGCTCGTCGGGTGGAGAAATATTATTATGACCTCCTGGCTGAAGAAACAGATCCTGGCGAAAGCATGGATAATGATAATTCATGTGGTGCTTTCAGAAAATGGAGAAAGCAGATTGAGAAGGACATACCACGTACCTTTCCAGGACATCCTGCATTAGATGAGAACGGTCGGAATTCATTGAGGCGTTTGCTTTTGGCTTATGCTCGTCATAACCCCTCTGTTGGGTACTGCCAGGCAATGAATTTCTTTGCAGGGTTATTGCTACTTCTGATGCCTGAGGAAAATGCTTTTTGGACTTTGGTGGGTATCATGGACGACTATTTTGATGGCTACTATACTGAAGAAATGATAGAATCTCAGGTGGACCAGCTTGTTTTTGAGGAACTAGTGCGAGAAAAGTTTCCAAAATTGGTGAATCATCTGGATTACTTGGGAGTCCAGGTGGGATGGATCATTGGACCCTGGTTTCTTTCCATTTTTGTAAATATGATTCCTTGGGAAAGCGTTATTCGAGTTTGGGACGTGCTTCTGTTTGAAGGAAATCGTGTTATGCTATTTCGAACAGCACTTGCTTTATTGGAGTTATATGGTCCTGCTATAGTCACCACTAAAGATGCAGGGGATGCTATTGTTTTGTTTCAGTCCCTTGTTGGCTCCACATTTGATAGCAGCCAGCTAGTTTTGACTGCATGCATGGGATTTTTAGCTATAACTGAAACTAGATTGAAAGAGTTGAGAGATAAGCATCGGCCAACTGTATTAGAAGTAGTTGAGGAAAGAGCTAGGGCTAAGAAATGGAAGGATTCAAAAGGGCTATCAGCTAAGCTGTACAGTTTTAAGCATGATCCTACTATAACAGAAGAAAAAAGTACTACTGAAGAAGAAAGCGCCAATGGAGATGTATCTCAATCGAAATCTGATTCCTGTAATCTAGATGAAATGCTTAAAGGCCTGTCTCTTTCTTCAGAACTAGATTCCTTATCGGATCCTCAGGACCAGGTGGATTGGTTGAAGGTTGAGTTATGCAGGGTGCTGGAGGAGAAAAGATCTTCTGTACTCAGATCCGAGGAGTTGGAGACGGCACTTATGGAGATTGTCAGGCATGATAATCGACGAGAATTAAGTGCAAAGGTTGAGCAGTTGGAGCATGAGGTGGCTGAGCTACACCAAGCCCTTGAGGACAAGACAGAGCAAGAAGCTGCAATGCTTAAGGTATTGATGTTGGTAGAGCAAGAACAAAAGGTAACTGAAGAAGCCAGAATAAGTGCCGAGCAAGAAGCGATAACACAGAAACATGCACTTTATGTGCTTCAGGAAAAATATGACAAAGCTATGTCTTCACTTACTGAAATGGAAAAGAGGGTAAAAGTGGCAGAATCAATGCTGGAGGCTACATTGCAATATGAATCTGGCCAAGCTAAAGCTTTATCTCCACGGTCTTTGCCAGGCTCAACGCAGGGAAATCCCACAAGGAAGATACCTCTTCTGTCATTTGGTCTTGGTTGGCGTGACAGAATGAAGAGATCCAATGACAGTAAATCAACCAATGAACAAAGTGACCCACCAATTCCACAAGAGGAAACCACTCCCACTCCACAAGAGAAAACTTCTCCCACTCCACAGGAAAAAACTGGTGAGGAAGTGCAGGAACATGTAGAGGGGGGAAGTGATACCCAAGTATTTGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

845

Amino Acids

95.89

Weight (kDa)

4.78

Isoelectric Point (pI)

55.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	270 - 481	1.4e-55	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	342 - 496	1.5e-25	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15020
malus_domestica	MD04G1112400.v1.1 MD12G1129300.v1.1
prunus_persica	Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1
pyrus_communis	pycom04g10320 pycom12g12560
rosa_chinensis	RchiOBHm_Chr3g0468201
rosa_laevigata	RLG00000024442
rosa_multiflora	Rmu_sc0004524.1_g000007
rosa_roxburghii	Rroxscaffold_6G00412920
rosa_rugosa	Rorug03G0094100
rosa_samantha	Rh3AG141800 Rh3BG163200 Rh3CG163300 Rh3DG163900
rosa_wichuraiana	Rw3G013420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	775
AcoI	YGGCCR	2 cut(s)	1598, 2260
AcsI	RAATTY	3 cut(s)	151, 1021, 1090
AcuI	CTGAAG	8 cut(s)	246, 369, 909, 1209, 1746, 1797, 2118, 2144
AcyI	GRCGYC	1 cut(s)	51
AfaI	GTAC	6 cut(s)	84, 982, 1076, 1679, 1720, 1905
AfeI	AGCGCT	1 cut(s)	26
AfiI	CCNNNNNNNGG	3 cut(s)	775, 1070, 1071
AflII	CTTAAG	1 cut(s)	2057
AflIII	ACRYGT	1 cut(s)	2500
AgsI	TTSAA	8 cut(s)	161, 263, 458, 652, 1385, 1576, 1656, 1861
AhlI	ACTAGT	1 cut(s)	1234
AjiI	CACGTC	1 cut(s)	1372
Alw21I	GWGCWC	1 cut(s)	191
Alw26I	GTCTC	3 cut(s)	64, 1809, 1919
AlwNI	CAGNNNCTG	2 cut(s)	775, 902
Aor51HI	AGCGCT	1 cut(s)	26
AoxI	GGCC	3 cut(s)	1598, 1798, 2260
ApeKI	GCWGC	2 cut(s)	1518, 2048
ApoI	RAATTY	3 cut(s)	151, 1021, 1090
ArsI	GACNNNNNNTTYG	2 cut(s)	1154, 1186
Asp700I	GAANNNNTTC	3 cut(s)	152, 549, 1248
AspLEI	GCGC	2 cut(s)	27, 1739
AspS9I	GGNCC	5 cut(s)	415, 1213, 1307, 1439, 1843
AsuHPI	GGTGA	3 cut(s)	1273, 1444, 2495
AsuII	TTCGAA	1 cut(s)	1408
AvaII	GGWCC	5 cut(s)	415, 1213, 1307, 1439, 1843
AxyI	CCTNAGG	2 cut(s)	1125, 1839
BaeI	ACNNNNGTAYC	1 cut(s)	2511
BalI	TGGCCA	1 cut(s)	2262
BamHI	GGATCC	2 cut(s)	738, 1834
BbsI	GAAGAC	2 cut(s)	594, 2178
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	2 cut(s)	1530, 2035
BccI	CCATC	7 cut(s)	537, 544, 569, 674, 750, 1169, 1290
BceAI	ACGGC	1 cut(s)	1944
BcgI	CGANNNNNNTGC	2 cut(s)	1940, 1974
BclI	TGATCA	1 cut(s)	709
BcoDI	GTCTC	3 cut(s)	64, 1809, 1919
BcuI	ACTAGT	1 cut(s)	1234
BfaI	CTAG	7 cut(s)	1235, 1526, 1569, 1632, 1781, 1820, 2536
BfmI	CTRYAG	2 cut(s)	231, 1446
BfoI	RGCGCY	2 cut(s)	28, 1740
BfrI	CTTAAG	1 cut(s)	2057
BglII	AGATCT	2 cut(s)	808, 1895
BisI	GCNGC	2 cut(s)	1519, 2049
BlpI	GCTNAGC	2 cut(s)	1671, 2007
BlsI	GCNGC	2 cut(s)	1520, 2050
BmcAI	AGTACT	1 cut(s)	1720
Bme18I	GGWCC	5 cut(s)	415, 1213, 1307, 1439, 1843
BmgBI	CACGTC	1 cut(s)	1372
BmgT120I	GGNCC	5 cut(s)	415, 1213, 1307, 1439, 1843
BmiI	GGNNCC	5 cut(s)	740, 767, 1309, 1504, 1836
BmsI	GCATC	6 cut(s)	553, 592, 1110, 1453, 1462, 1603
BpiI	GAAGAC	2 cut(s)	594, 2178
BpmI	CTGGAG	4 cut(s)	592, 797, 1904, 2255
Bpu1102I	GCTNAGC	2 cut(s)	1671, 2007
Bpu14I	TTCGAA	1 cut(s)	1408
BpuEI	CTTGAG	3 cut(s)	37, 215, 2045
BsaAI	YACGTR	1 cut(s)	980
BsaBI	GATNNNNATC	1 cut(s)	1593
BsaHI	GRCGYC	1 cut(s)	51
BsaI	GGTCTC	1 cut(s)	64
BsaJI	CCNNGG	6 cut(s)	45, 761, 1310, 1343, 1914, 2282
BsaXI	ACNNNNNCTCC	4 cut(s)	1275, 1305, 2425, 2455
Bsc4I	CCNNNNNNNGG	3 cut(s)	775, 1070, 1071
Bse1I	ACTGG	3 cut(s)	609, 780, 2485
Bse21I	CCTNAGG	2 cut(s)	1125, 1839
Bse3DI	GCAATG	3 cut(s)	1092, 2058, 2243
Bse8I	GATNNNNATC	1 cut(s)	1593
BseDI	CCNNGG	6 cut(s)	45, 761, 1310, 1343, 1914, 2282
BseGI	GGATG	7 cut(s)	440, 580, 685, 742, 994, 1301, 1477
BseJI	GATNNNNATC	1 cut(s)	1593
BseLI	CCNNNNNNNGG	3 cut(s)	775, 1070, 1071
BseMI	GCAATG	3 cut(s)	1092, 2058, 2243
BseMII	CTCAG	9 cut(s)	194, 267, 291, 826, 1116, 1220, 1853, 1921, 1998
BseNI	ACTGG	3 cut(s)	609, 780, 2485
BseRI	GAGGAG	4 cut(s)	134, 810, 1901, 1931
BseXI	GCAGC	2 cut(s)	1530, 2035
BsgI	GTGCAG	1 cut(s)	2513
Bsh1285I	CGRYCG	1 cut(s)	1018
BshFI	GGCC	3 cut(s)	1600, 1800, 2262
BsiEI	CGRYCG	1 cut(s)	1018
BsiHKAI	GWGCWC	1 cut(s)	191
BslFI	GGGAC	4 cut(s)	62, 766, 1382, 1477
BslI	CCNNNNNNNGG	3 cut(s)	775, 1070, 1071
BsmAI	GTCTC	3 cut(s)	64, 1809, 1919
BsmBI	CGTCTC	1 cut(s)	1919
BsmFI	GGGAC	4 cut(s)	62, 766, 1382, 1477
BsmI	GAATGC	1 cut(s)	471
BsnI	GGCC	3 cut(s)	1600, 1800, 2262
Bso31I	GGTCTC	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	1408
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp1407I	TGTACA	2 cut(s)	82, 1677
Bsp1720I	GCTNAGC	2 cut(s)	1671, 2007
BspANI	GGCC	3 cut(s)	1600, 1800, 2262
BspCNI	CTCAG	9 cut(s)	193, 268, 292, 825, 1117, 1219, 1852, 1920, 1999
BspLI	GGNNCC	5 cut(s)	740, 767, 1309, 1504, 1836
BspT104I	TTCGAA	1 cut(s)	1408
BspTI	CTTAAG	1 cut(s)	2057
BspTNI	GGTCTC	1 cut(s)	64
BsrDI	GCAATG	3 cut(s)	1092, 2058, 2243
BsrGI	TGTACA	2 cut(s)	82, 1677
BsrI	ACTGG	3 cut(s)	609, 780, 2485
BssECI	CCNNGG	6 cut(s)	45, 761, 1310, 1343, 1914, 2282
BssNI	GRCGYC	1 cut(s)	51
BssT1I	CCWWGG	1 cut(s)	1343
Bst4CI	ACNGT	6 cut(s)	698, 1016, 1606, 1682, 2286, 2384
Bst6I	CTCTTC	2 cut(s)	2337, 2363
BstACI	GRCGYC	1 cut(s)	51
BstAFI	CTTAAG	1 cut(s)	2057
BstAPI	GCANNNNNTGC	1 cut(s)	1472
BstAUI	TGTACA	2 cut(s)	82, 1677
BstBAI	YACGTR	1 cut(s)	980
BstBI	TTCGAA	1 cut(s)	1408
BstC8I	GCNNGC	5 cut(s)	222, 705, 831, 1523, 1540
BstDSI	CCRYGG	1 cut(s)	2282
BstF5I	GGATG	7 cut(s)	440, 580, 685, 742, 994, 1301, 1477
BstH2I	RGCGCY	2 cut(s)	28, 1740
BstHHI	GCGC	2 cut(s)	27, 1739
BstMAI	GTCTC	3 cut(s)	64, 1809, 1919
BstMCI	CGRYCG	1 cut(s)	1018
BstMWI	GCNNNNNNNGC	2 cut(s)	1472, 1993
BstNSI	RCATGY	3 cut(s)	1542, 2147, 2504
BstSFI	CTRYAG	2 cut(s)	231, 1446
BstV1I	GCAGC	2 cut(s)	1530, 2035
BstV2I	GAAGAC	2 cut(s)	594, 2178
BstX2I	RGATCY	8 cut(s)	367, 738, 808, 898, 1834, 1895, 1910, 2372
BstYI	RGATCY	8 cut(s)	367, 738, 808, 898, 1834, 1895, 1910, 2372
Bsu36I	CCTNAGG	2 cut(s)	1125, 1839
BsuRI	GGCC	3 cut(s)	1600, 1800, 2262
BtgI	CCRYGG	1 cut(s)	2282
BtgZI	GCGATG	1 cut(s)	321
BtrI	CACGTC	1 cut(s)	1372
BtsCI	GGATG	7 cut(s)	440, 580, 685, 742, 994, 1301, 1477
BtsIMutI	CAGTG	2 cut(s)	616, 703
Cac8I	GCNNGC	5 cut(s)	222, 705, 831, 1523, 1540
CaiI	CAGNNNCTG	2 cut(s)	775, 902
CfoI	GCGC	2 cut(s)	27, 1739
Cfr13I	GGNCC	5 cut(s)	415, 1213, 1307, 1439, 1843
CseI	GACGC	1 cut(s)	59
CsiI	ACCWGGT	1 cut(s)	1845
Csp6I	GTAC	6 cut(s)	83, 981, 1075, 1678, 1719, 1904
CspCI	CAANNNNNGTGG	2 cut(s)	2271, 2306
CviQI	GTAC	6 cut(s)	83, 981, 1075, 1678, 1719, 1904
EaeI	YGGCCR	2 cut(s)	1598, 2260
Eam1104I	CTCTTC	2 cut(s)	2337, 2363
EarI	CTCTTC	2 cut(s)	2337, 2363
Eco130I	CCWWGG	1 cut(s)	1343
Eco147I	AGGCCT	1 cut(s)	1800
Eco31I	GGTCTC	1 cut(s)	64
Eco47I	GGWCC	5 cut(s)	415, 1213, 1307, 1439, 1843
Eco47III	AGCGCT	1 cut(s)	26
Eco57I	CTGAAG	8 cut(s)	246, 369, 909, 1209, 1746, 1797, 2118, 2144
Eco81I	CCTNAGG	2 cut(s)	1125, 1839
EcoRI	GAATTC	1 cut(s)	1021
EcoT14I	CCWWGG	1 cut(s)	1343
EcoT22I	ATGCAT	1 cut(s)	1544
ErhI	CCWWGG	1 cut(s)	1343
Esp3I	CGTCTC	1 cut(s)	1919
FalI	AAGNNNNNCTT	2 cut(s)	516, 548
FaqI	GGGAC	4 cut(s)	62, 766, 1382, 1477
FbaI	TGATCA	1 cut(s)	709
Fnu4HI	GCNGC	2 cut(s)	1519, 2049
FokI	GGATG	7 cut(s)	427, 587, 692, 729, 981, 1308, 1484
Fsp4HI	GCNGC	2 cut(s)	1519, 2049
FspBI	CTAG	7 cut(s)	1235, 1526, 1569, 1632, 1781, 1820, 2536
GlaI	GCGC	2 cut(s)	26, 1738
GluI	GCNGC	2 cut(s)	1519, 2049
GsuI	CTGGAG	4 cut(s)	592, 797, 1904, 2255
HaeII	RGCGCY	2 cut(s)	28, 1740
HaeIII	GGCC	3 cut(s)	1600, 1800, 2262
HgaI	GACGC	1 cut(s)	59
HhaI	GCGC	2 cut(s)	27, 1739
Hin1I	GRCGYC	1 cut(s)	51
Hin6I	GCGC	2 cut(s)	25, 1737
HinP1I	GCGC	2 cut(s)	25, 1737
HindIII	AAGCTT	3 cut(s)	654, 831, 2271
HphI	GGTGA	3 cut(s)	1273, 1444, 2495
Hpy166II	GTNNAC	1 cut(s)	1213
Hpy8I	GTNNAC	1 cut(s)	1213
Hpy99I	CGWCG	2 cut(s)	858, 1965
HpyCH4III	ACNGT	6 cut(s)	698, 1016, 1606, 1682, 2286, 2384
HpyCH4IV	ACGT	2 cut(s)	979, 1371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1472, 1993
HpySE526I	ACGT	2 cut(s)	979, 1371
Hsp92I	GRCGYC	1 cut(s)	51
HspAI	GCGC	2 cut(s)	25, 1737
Ksp22I	TGATCA	1 cut(s)	709
LmnI	GCTCC	4 cut(s)	426, 614, 1508, 1993
Lsp1109I	GCAGC	2 cut(s)	1530, 2035
LweI	GCATC	6 cut(s)	553, 592, 1110, 1453, 1462, 1603
MabI	ACCWGGT	1 cut(s)	1845
MaeI	CTAG	7 cut(s)	1235, 1526, 1569, 1632, 1781, 1820, 2536
MaeII	ACGT	2 cut(s)	979, 1371
MaeIII	GTNAC	6 cut(s)	629, 692, 1450, 2092, 2357, 2405
MflI	RGATCY	8 cut(s)	367, 738, 808, 898, 1834, 1895, 1910, 2372
MhlI	GDGCHC	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	2262
MluCI	AATT	8 cut(s)	151, 215, 925, 1021, 1090, 1256, 1967, 2415
MluNI	TGGCCA	1 cut(s)	2262
MlyI	GAGTC	2 cut(s)	788, 1293
MmeI	TCCRAC	4 cut(s)	12, 998, 1902, 1971
Mox20I	TGGCCA	1 cut(s)	2262
Mph1103I	ATGCAT	1 cut(s)	1544
MroXI	GAANNNNTTC	3 cut(s)	152, 549, 1248
MscI	TGGCCA	1 cut(s)	2262
MseI	TTAA	4 cut(s)	1686, 1794, 1970, 2058
Msp20I	TGGCCA	1 cut(s)	2262
MspA1I	CMGCKG	1 cut(s)	224
MspCI	CTTAAG	1 cut(s)	2057
Mva1269I	GAATGC	1 cut(s)	471
MwoI	GCNNNNNNNGC	2 cut(s)	1472, 1993
NlaIV	GGNNCC	5 cut(s)	740, 767, 1309, 1504, 1836
NmeAIII	GCCGAG	1 cut(s)	2143
NmuCI	GTSAC	3 cut(s)	1450, 2357, 2405
NsiI	ATGCAT	1 cut(s)	1544
NspI	RCATGY	3 cut(s)	1542, 2147, 2504
NspV	TTCGAA	1 cut(s)	1408
PaeI	GCATGC	1 cut(s)	1542
PceI	AGGCCT	1 cut(s)	1800
PciI	ACATGT	1 cut(s)	2500
PctI	GAATGC	1 cut(s)	471
PdmI	GAANNNNTTC	3 cut(s)	152, 549, 1248
PflMI	CCANNNNNTGG	1 cut(s)	775
PfoI	TCCNGGA	1 cut(s)	988
PkrI	GCNGC	2 cut(s)	1520, 2050
PleI	GAGTC	2 cut(s)	787, 1292
PpsI	GAGTC	2 cut(s)	787, 1292
Ppu21I	YACGTR	1 cut(s)	980
PscI	ACATGT	1 cut(s)	2500
PspN4I	GGNNCC	5 cut(s)	740, 767, 1309, 1504, 1836
PspPI	GGNCC	5 cut(s)	415, 1213, 1307, 1439, 1843
PstNI	CAGNNNCTG	2 cut(s)	775, 902
PsuI	RGATCY	8 cut(s)	367, 738, 808, 898, 1834, 1895, 1910, 2372
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	6 cut(s)	84, 982, 1076, 1679, 1720, 1905
RsaNI	GTAC	6 cut(s)	83, 981, 1075, 1678, 1719, 1904
SaqAI	TTAA	4 cut(s)	1686, 1794, 1970, 2058
SatI	GCNGC	2 cut(s)	1519, 2049
Sau96I	GGNCC	5 cut(s)	415, 1213, 1307, 1439, 1843
ScaI	AGTACT	1 cut(s)	1720
SchI	GAGTC	2 cut(s)	788, 1293
SduI	GDGCHC	1 cut(s)	191
SexAI	ACCWGGT	1 cut(s)	1845
SfaNI	GCATC	6 cut(s)	553, 592, 1110, 1453, 1462, 1603
SfcI	CTRYAG	2 cut(s)	231, 1446
SfuI	TTCGAA	1 cut(s)	1408
SinI	GGWCC	5 cut(s)	415, 1213, 1307, 1439, 1843
SmlI	CTYRAG	4 cut(s)	16, 194, 2024, 2057
SmoI	CTYRAG	4 cut(s)	16, 194, 2024, 2057
SpeI	ACTAGT	1 cut(s)	1234
SphI	GCATGC	1 cut(s)	1542
Sse9I	AATT	8 cut(s)	151, 215, 925, 1021, 1090, 1256, 1967, 2415
SseBI	AGGCCT	1 cut(s)	1800
SspI	AATATT	1 cut(s)	869
SspMI	CTAG	7 cut(s)	1235, 1526, 1569, 1632, 1781, 1820, 2536
StuI	AGGCCT	1 cut(s)	1800
StyI	CCWWGG	1 cut(s)	1343
TaaI	ACNGT	6 cut(s)	698, 1016, 1606, 1682, 2286, 2384
TaiI	ACGT	2 cut(s)	982, 1374
TaqI	TCGA	4 cut(s)	1360, 1408, 1760, 1960
TasI	AATT	8 cut(s)	151, 215, 925, 1021, 1090, 1256, 1967, 2415
TatI	WGTACW	4 cut(s)	82, 1677, 1718, 1903
Tru1I	TTAA	4 cut(s)	1686, 1794, 1970, 2058
Tru9I	TTAA	4 cut(s)	1686, 1794, 1970, 2058
TscAI	CASTG	2 cut(s)	616, 703
TseFI	GTSAC	3 cut(s)	1450, 2357, 2405
TseI	GCWGC	2 cut(s)	1518, 2048
Tsp45I	GTSAC	3 cut(s)	1450, 2357, 2405
TspGWI	ACGGA	1 cut(s)	660
TspRI	CASTG	2 cut(s)	616, 703
Van91I	CCANNNNNTGG	1 cut(s)	775
Vha464I	CTTAAG	1 cut(s)	2057
VpaK11BI	GGWCC	5 cut(s)	415, 1213, 1307, 1439, 1843
XapI	RAATTY	3 cut(s)	151, 1021, 1090
XbaI	TCTAGA	1 cut(s)	1780
XceI	RCATGY	3 cut(s)	1542, 2147, 2504
XmnI	GAANNNNTTC	3 cut(s)	152, 549, 1248
XspI	CTAG	7 cut(s)	1235, 1526, 1569, 1632, 1781, 1820, 2536
ZrmI	AGTACT	1 cut(s)	1720
Zsp2I	ATGCAT	1 cut(s)	1544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.