Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0011576

Physical Location & Seq

Genomic Coordinates Reverse (-)

13085932 .. 13087811

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGTTGTTGTCCTTGATGAGTAAGCGCTTGTTGGAGGCTGATTCCAGGTCTGTAGATTTAGTGATATATTTATGGTATCAGGAGCAGGAAGAGGAAAGATCAAATAAGTGGAAGTACTTCCTTGAAAGTGTAGAGAAATCTTCTCAATCGTGCACTCCTGAGAATTCAGATAAAGAGGAATTGCAGGCTGAAGCTACTGAGCAGAAAGCAAAGACAGTTTGTGAGAGTGGTGAGGAAGGGAATGATACAATTAGTAAAAAAACTGCTTCTGATCTTTCATCAGAAAGAGATCCAGAAAAGGAGCTTAAACTTTTAGAACAAACAGAGACATCTGAGGTCCAAAAGTGGACTCTTATTAGATCATCTCTTAGTTCCATTGAAAATATGATGAGCGTTCGTGTCAGGAAGGGAAGAAATATGAAAGATGAGCAGATAATCGTGGATAAGGACCATCTTCCATTCATAGAAGAAGAAGCTGTTGATGTTGGGATAGAGGAAGCTAGGGTTAATGGGGCCCCTCTAGAGCCCTTCTTTCCTTGGAAACTAGAACTCGAGTCCCTTGTTCATGGCGGATTGCCAAGGGATCTCAGGTATGACTTGCTGGCTCAAGAAATAAATACTAGTGCAAGCATGGATAATGACAACTCATCTGGTGTTCCCAGAAAATGGAGAAGGCAGATTGAGAAGGTCATTAGATGCATGTGCCTTGGACTTTATGTTTCAATTCGTAGGTGCTACTTCTTTTTCTTTGCATTGCAATCTGGGTTTCTCCCTGAACTAAATGTTATCATTTTATTGCAGGACATACCACGTACATTTCCAGGGTGTCCTGCATTGAACGAGAATGGTTGGAATTTGCTGAGGCGTTTACTTTTAGCTTATGTTCGTCATAACCCTTCTGTTGGGTATTGCCAGGTAATTGGGGCAATTCATCAGACTTTCTATTTTGCATTTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

320

Amino Acids

36.79

Weight (kDa)

5.11

Isoelectric Point (pI)

68.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15020
malus_domestica	MD04G1112400.v1.1 MD12G1129300.v1.1
prunus_persica	Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1
pyrus_communis	pycom04g10320 pycom12g12560
rosa_chinensis	RchiOBHm_Chr3g0468201
rosa_laevigata	RLG00000024442
rosa_multiflora	Rmu_sc0004524.1_g000007
rosa_roxburghii	Rroxscaffold_6G00412920
rosa_rugosa	Rorug03G0094100
rosa_samantha	Rh3AG141800 Rh3BG163200 Rh3CG163300 Rh3DG163900
rosa_wichuraiana	Rw3G013420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	666
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	2 cut(s)	284, 591
AcsI	RAATTY	2 cut(s)	163, 853
AcuI	CTGAAG	1 cut(s)	210
AfaI	GTAC	2 cut(s)	116, 814
AfeI	AGCGCT	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	666, 902
AgsI	TTSAA	4 cut(s)	125, 380, 723, 838
AhlI	ACTAGT	1 cut(s)	620
AjnI	CCWGG	3 cut(s)	44, 820, 912
AluBI	AGCT	5 cut(s)	194, 304, 476, 500, 878
AluI	AGCT	5 cut(s)	194, 304, 476, 500, 878
Alw21I	GWGCWC	1 cut(s)	155
Alw26I	GTCTC	1 cut(s)	320
Alw44I	GTGCAC	1 cut(s)	151
AlwI	GGATC	2 cut(s)	284, 591
Ama87I	CYCGRG	1 cut(s)	551
Aor51HI	AGCGCT	1 cut(s)	26
AoxI	GGCC	1 cut(s)	513
ApaI	GGGCCC	1 cut(s)	517
ApaLI	GTGCAC	1 cut(s)	151
ApoI	RAATTY	2 cut(s)	163, 853
Asp700I	GAANNNNTTC	1 cut(s)	116
AspLEI	GCGC	1 cut(s)	27
AspS9I	GGNCC	4 cut(s)	337, 448, 513, 514
AsuHPI	GGTGA	1 cut(s)	242
AvaI	CYCGRG	1 cut(s)	551
AvaII	GGWCC	2 cut(s)	337, 448
BaeGI	GKGCMC	2 cut(s)	155, 517
BanII	GRGCYC	2 cut(s)	517, 528
Bbv12I	GWGCWC	1 cut(s)	155
BbvCI	CCTCAGC	1 cut(s)	860
BccI	CCATC	1 cut(s)	459
BciT130I	CCWGG	3 cut(s)	46, 822, 914
BcoDI	GTCTC	1 cut(s)	320
BcuI	ACTAGT	1 cut(s)	620
BfaI	CTAG	4 cut(s)	501, 521, 545, 621
BfmI	CTRYAG	1 cut(s)	51
BfoI	RGCGCY	1 cut(s)	28
BmcAI	AGTACT	1 cut(s)	116
Bme1390I	CCNGG	3 cut(s)	46, 822, 914
Bme18I	GGWCC	2 cut(s)	337, 448
BmeT110I	CYCGRG	1 cut(s)	551
BmgT120I	GGNCC	4 cut(s)	337, 448, 513, 514
BmiI	GGNNCC	3 cut(s)	514, 515, 516
BmrFI	CCNGG	3 cut(s)	46, 822, 914
BmsI	GCATC	1 cut(s)	686
Bpu10I	CCTNAGC	1 cut(s)	860
BpuEI	CTTGAG	1 cut(s)	591
BsaAI	YACGTR	1 cut(s)	812
BsaJI	CCNNGG	4 cut(s)	536, 578, 706, 821
Bsc4I	CCNNNNNNNGG	2 cut(s)	666, 902
Bse3DI	GCAATG	1 cut(s)	752
BseBI	CCWGG	3 cut(s)	46, 822, 914
BseDI	CCNNGG	4 cut(s)	536, 578, 706, 821
BseLI	CCNNNNNNNGG	2 cut(s)	666, 902
BseMI	GCAATG	1 cut(s)	752
BseMII	CTCAG	5 cut(s)	150, 189, 324, 601, 851
BseSI	GKGCMC	2 cut(s)	155, 517
BshFI	GGCC	1 cut(s)	515
BsiHKAI	GWGCWC	1 cut(s)	155
BsiHKCI	CYCGRG	1 cut(s)	551
BslFI	GGGAC	1 cut(s)	541
BslI	CCNNNNNNNGG	2 cut(s)	666, 902
BsmAI	GTCTC	1 cut(s)	320
BsmFI	GGGAC	1 cut(s)	541
BsnI	GGCC	1 cut(s)	515
BsoBI	CYCGRG	1 cut(s)	551
Bsp120I	GGGCCC	1 cut(s)	513
Bsp1286I	GDGCHC	3 cut(s)	155, 517, 528
Bsp143I	GATC	5 cut(s)	98, 271, 289, 359, 583
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	1 cut(s)	515
BspCNI	CTCAG	5 cut(s)	151, 190, 325, 600, 852
BspLI	GGNNCC	3 cut(s)	514, 515, 516
BspPI	GGATC	2 cut(s)	284, 591
BsrDI	GCAATG	1 cut(s)	752
BssECI	CCNNGG	4 cut(s)	536, 578, 706, 821
BssMI	GATC	5 cut(s)	98, 271, 289, 359, 583
BssT1I	CCWWGG	3 cut(s)	536, 578, 706
Bst2UI	CCWGG	3 cut(s)	46, 822, 914
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	84
BstBAI	YACGTR	1 cut(s)	812
BstC8I	GCNNGC	3 cut(s)	186, 603, 628
BstDEI	CTNAG	6 cut(s)	159, 198, 333, 368, 587, 860
BstH2I	RGCGCY	1 cut(s)	28
BstHHI	GCGC	1 cut(s)	27
BstKTI	GATC	5 cut(s)	101, 274, 292, 362, 586
BstMAI	GTCTC	1 cut(s)	320
BstMBI	GATC	5 cut(s)	98, 271, 289, 359, 583
BstNI	CCWGG	3 cut(s)	46, 822, 914
BstNSI	RCATGY	1 cut(s)	703
BstSCI	CCNGG	3 cut(s)	44, 820, 912
BstSFI	CTRYAG	1 cut(s)	51
BstSLI	GKGCMC	2 cut(s)	155, 517
BstX2I	RGATCY	2 cut(s)	289, 583
BstXI	CCANNNNNNTGG	1 cut(s)	920
BstYI	RGATCY	2 cut(s)	289, 583
BsuRI	GGCC	1 cut(s)	515
Cac8I	GCNNGC	3 cut(s)	186, 603, 628
CfoI	GCGC	1 cut(s)	27
Cfr13I	GGNCC	4 cut(s)	337, 448, 513, 514
Csp6I	GTAC	2 cut(s)	115, 813
CviAII	CATG	3 cut(s)	566, 631, 700
CviQI	GTAC	2 cut(s)	115, 813
DdeI	CTNAG	6 cut(s)	159, 198, 333, 368, 587, 860
DpnI	GATC	5 cut(s)	100, 273, 291, 361, 585
DpnII	GATC	5 cut(s)	98, 271, 289, 359, 583
Eam1104I	CTCTTC	1 cut(s)	84
EarI	CTCTTC	1 cut(s)	84
EciI	GGCGGA	1 cut(s)	585
Eco130I	CCWWGG	3 cut(s)	536, 578, 706
Eco24I	GRGCYC	2 cut(s)	517, 528
Eco47I	GGWCC	2 cut(s)	337, 448
Eco47III	AGCGCT	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	210
Eco88I	CYCGRG	1 cut(s)	551
EcoO109I	RGGNCCY	2 cut(s)	513, 514
EcoRI	GAATTC	1 cut(s)	163
EcoRII	CCWGG	3 cut(s)	44, 820, 912
EcoT14I	CCWWGG	3 cut(s)	536, 578, 706
EcoT22I	ATGCAT	1 cut(s)	701
EcoT38I	GRGCYC	2 cut(s)	517, 528
ErhI	CCWWGG	3 cut(s)	536, 578, 706
FaeI	CATG	3 cut(s)	569, 634, 703
FaqI	GGGAC	1 cut(s)	541
FatI	CATG	3 cut(s)	565, 630, 699
FriOI	GRGCYC	2 cut(s)	517, 528
FspBI	CTAG	4 cut(s)	501, 521, 545, 621
GlaI	GCGC	1 cut(s)	26
HaeII	RGCGCY	1 cut(s)	28
HaeIII	GGCC	1 cut(s)	515
HhaI	GCGC	1 cut(s)	27
Hin1II	CATG	3 cut(s)	569, 634, 703
Hin6I	GCGC	1 cut(s)	25
HinP1I	GCGC	1 cut(s)	25
HinfI	GANTC	3 cut(s)	41, 349, 554
HphI	GGTGA	1 cut(s)	242
Hpy166II	GTNNAC	3 cut(s)	153, 348, 869
Hpy188I	TCNGA	5 cut(s)	169, 271, 283, 334, 936
Hpy188III	TCNNGA	6 cut(s)	80, 158, 293, 403, 521, 608
Hpy8I	GTNNAC	3 cut(s)	153, 348, 869
HpyAV	CCTTC	6 cut(s)	230, 400, 538, 666, 679, 906
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	811
HpyCH4V	TGCA	9 cut(s)	153, 184, 626, 699, 752, 757, 799, 833, 950
HpyF3I	CTNAG	6 cut(s)	159, 198, 333, 368, 587, 860
HpySE526I	ACGT	1 cut(s)	811
Hsp92II	CATG	3 cut(s)	569, 634, 703
HspAI	GCGC	1 cut(s)	25
Kzo9I	GATC	5 cut(s)	98, 271, 289, 359, 583
LmnI	GCTCC	2 cut(s)	82, 301
LweI	GCATC	1 cut(s)	686
MaeI	CTAG	4 cut(s)	501, 521, 545, 621
MaeII	ACGT	1 cut(s)	811
MalI	GATC	5 cut(s)	100, 273, 291, 361, 585
MboI	GATC	5 cut(s)	98, 271, 289, 359, 583
MboII	GAAGA	6 cut(s)	101, 132, 423, 446, 479, 482
MflI	RGATCY	2 cut(s)	289, 583
MhlI	GDGCHC	3 cut(s)	155, 517, 528
MluCI	AATT	7 cut(s)	163, 179, 249, 723, 853, 918, 927
MlyI	GAGTC	2 cut(s)	343, 563
MmeI	TCCRAC	2 cut(s)	12, 830
MnlI	CCTC	8 cut(s)	28, 85, 169, 226, 328, 487, 528, 855
Mph1103I	ATGCAT	1 cut(s)	701
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	2 cut(s)	306, 507
MspR9I	CCNGG	3 cut(s)	46, 822, 914
MvaI	CCWGG	3 cut(s)	46, 822, 914
NdeII	GATC	5 cut(s)	98, 271, 289, 359, 583
NlaIII	CATG	3 cut(s)	569, 634, 703
NlaIV	GGNNCC	3 cut(s)	514, 515, 516
NsiI	ATGCAT	1 cut(s)	701
NspI	RCATGY	1 cut(s)	703
PaeR7I	CTCGAG	1 cut(s)	551
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	666
PleI	GAGTC	2 cut(s)	343, 562
PpsI	GAGTC	2 cut(s)	343, 562
Ppu21I	YACGTR	1 cut(s)	812
Psp6I	CCWGG	3 cut(s)	44, 820, 912
PspGI	CCWGG	3 cut(s)	44, 820, 912
PspN4I	GGNNCC	3 cut(s)	514, 515, 516
PspOMI	GGGCCC	1 cut(s)	513
PspPI	GGNCC	4 cut(s)	337, 448, 513, 514
PspXI	VCTCGAGB	1 cut(s)	551
PsuI	RGATCY	2 cut(s)	289, 583
RsaI	GTAC	2 cut(s)	116, 814
RsaNI	GTAC	2 cut(s)	115, 813
SaqAI	TTAA	2 cut(s)	306, 507
Sau3AI	GATC	5 cut(s)	98, 271, 289, 359, 583
Sau96I	GGNCC	4 cut(s)	337, 448, 513, 514
ScaI	AGTACT	1 cut(s)	116
SchI	GAGTC	2 cut(s)	343, 563
ScrFI	CCNGG	3 cut(s)	46, 822, 914
SduI	GDGCHC	3 cut(s)	155, 517, 528
SfaNI	GCATC	1 cut(s)	686
SfcI	CTRYAG	1 cut(s)	51
Sfr274I	CTCGAG	1 cut(s)	551
SinI	GGWCC	2 cut(s)	337, 448
SlaI	CTCGAG	1 cut(s)	551
SmlI	CTYRAG	2 cut(s)	551, 606
SmoI	CTYRAG	2 cut(s)	551, 606
SpeI	ACTAGT	1 cut(s)	620
Sse9I	AATT	7 cut(s)	163, 179, 249, 723, 853, 918, 927
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	4 cut(s)	501, 521, 545, 621
StyD4I	CCNGG	3 cut(s)	44, 820, 912
StyI	CCWWGG	3 cut(s)	536, 578, 706
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	814
TaqI	TCGA	1 cut(s)	552
TasI	AATT	7 cut(s)	163, 179, 249, 723, 853, 918, 927
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	2 cut(s)	306, 507
Tru9I	TTAA	2 cut(s)	306, 507
TspDTI	ATGAA	5 cut(s)	267, 434, 451, 554, 920
Van91I	CCANNNNNTGG	1 cut(s)	666
VneI	GTGCAC	1 cut(s)	151
VpaK11BI	GGWCC	2 cut(s)	337, 448
XapI	RAATTY	2 cut(s)	163, 853
XbaI	TCTAGA	1 cut(s)	520
XceI	RCATGY	1 cut(s)	703
XhoI	CTCGAG	1 cut(s)	551
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	4 cut(s)	501, 521, 545, 621
ZrmI	AGTACT	1 cut(s)	116
Zsp2I	ATGCAT	1 cut(s)	701

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.