Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0011576

Physical Location & Seq

Genomic Coordinates Reverse (-)

35377782 .. 35385266

Gene Structure 7485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2454 bp

ATGATGACGGAAGAGCGCTTCAATGTCCGCCACGATCATAAGCCCGGGAGAGAATCTGGTGTCAACAGGGACGCCTATGGGTTTGCTTTGAGACCTCAATATGTACAAACATATGAAGAATACGCTCATATCTACAAGGAGGAGGAAGATGAACGATCAGATAAATGGAAGAACTTCCTTGAACATATAGAAAAATCTTCTCAGTCGTGCTCTCATGAGAAGGCGCATACAGAGGAATTGCCAGCTGAAGCTACAGAGCAGAAGGCATATAGAGAGGAACTTCAGGCTGAACCTACTGAGCAGAAAGCAGAGATAGTTTCTGAGAGCGATGAGGAAGGGAATGACAAAACTAGTCTGAAATCTATTTCTGAAGGTTCATCAGAAAGAGATCCCAAAAAGGAGGCTCAACTTCCAAAAGAAATAGGAAAAAGTAAGGTCCAAACATGGACCTTCATTAGGTCATCCCTTAGTTCCATTGAAAATATGATGAGCATTCGTGTTAGGAAACAAAAGAATATGAAAGATGAGCATATAGTTGTGGATAAAGACCATCTTCCATCAATAGAAGAAGTTCCTTCACAAGATGCTTTTGAGGATGGTCTAGAGGAAGACATTTATCTTGATGCCTCCAGTGGAGGAACTTCTGTAAGTAACGGGGAGTCTGACGGATTGAAAGCTTCTGGGGAAGATGAGGTTGTGGATGGTGGTGTCTGTAACAATGTGCAAGCTGATCAGACAAAAGAGGATGTGGCTAATGGGATCCATCCAGAACCTCTCTTTCCTTGGAACCAGGAACTGGAGTCTCTTGTTCATGGAGGAGTACCAAGAGATCTCAGGGGAGAGGTATGGCAAGCTTTTGTAGGTGTGAAGGCTCGTCGGGTGGAGAAATATTATTATGACCTCCTGGCTGAAGAAACAAATACTGGCGAAAGCATCGATAATGATAATTCATGTGGTGCTTTCAGAAAATGGAGAAAGCAGATTGAGAAGGACATACCACGAACCTTTCCAGGACATCCTGCATTAGATGAGAACGGTCGGAATTCATTGAGGCGTTTGCTTTTGGCTTATGCTCGTCATAACCCCTCTGTTGGGTACTGCCAGGCAATGAATTTCTTTGCAGGGTTATTGCTACTTCTGATGCCTGAGGAAAATGCTTTTTGGACTTTGGTGGGTATCATCGACGACTATTTTGATGGCTACTATACTGAAGAAATGATAGAATCTCAGTCTGTGCTGCCTTTTTTCATTCTGAGTAGCATTTATTGCAGTGAATCATCTGGATTACTTGGGAGTCCAGTTATTCGAGTTTGGGACGTGCTTCTGTTTGAAGGAAATCGTGTTATGCTATTTCGAACAGCACTTGCTTTATTGGAGTTATATGGTCCTGCTATAGTCACCACTAAAGATGCAGGGGATGCTATTGTTTTGTTGCAGTCCCTCGTTGGCTCCACATTTGACAGCAGCCAGCTAGTTTTGACTGCATGCATGGGATTTTTAGCTATAACTGAAACTAAATTGAAAGAGTTGAGAGATAAGCACCGGCCAACTGTATTAGAAGTAGTTGAGGAAAGAGCTAGGGCTAAGAAATGGAAGGATTCAAAAGGGCTGTCAGCTAAGCTGTACAGTTTTAAGCATGATCCTACTATAACAGAAGAAAAAAGTACTACTGAAGAAGAAAGCGCCAATGGAGATGTATCCCAATCAAAATCTGATTCCTGTAATCTAGATGAAATGCTTAATGGCCTATCTCTTTCTTCAGAATTAGATTCCTTATCGGATCCTCAGGACCAGTTGGAATCCTGCCATGCATTGTTTACTCTATCCACGCTGCATCCACTTTCCAGATCCGAGGAGTTGGAGACTGCACTTATGGAGATTGTCAGGCATGATAATCGACGAGAATTAAGTGCAAAGGTTGAGCAGTTGGAGCACGAGGTGGCTGAGCTAAACCAAGCCCTTGAGGACAAGACAGAGCAAGAAGCTGCAATGCTTAAGGTATTGATGTTGGTAGAGCAAGAACAAAAGGTAACTGAAGAAGCCAGAATAAGTGCCGAGCAAGAAGCAATAACACAGAAACATGCACTTTATGTGCTTCAGGAAAAATATGACAAAGCTATGTCTTCACTTACTGAAATGGAAAAGAGGGTAAAAGTGGCAGAATCAATGCTGGAGGCTACATTGCAATATGAATCTGGCCAAGCTAAAGCTTTATCTCCACGGTCTTTGCCAGGCTCAACGCAGGGAAATCCCACAAGGAAGATACCTCTTCTGTCATTTGGACTTGGTTGGCGTGACAGAATGAAGAGATCCAATGACAGTAAATCAACCAATGAACAAAGTGACCCACCAATTCCACAAGAGGAAACCACTCCCACTCCACAAGAGAAAACTTCTCCCACTCCACAGGAAAAAACTGGTGAGGAAGTGCAGGAACATGTAGAGGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

817

Amino Acids

92.09

Weight (kDa)

4.83

Isoelectric Point (pI)

58.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	277 - 410	4.5e-29	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	349 - 413	1.2e-09	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15020
malus_domestica	MD04G1112400.v1.1 MD12G1129300.v1.1
prunus_persica	Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1
pyrus_communis	pycom04g10320 pycom12g12560
rosa_chinensis	RchiOBHm_Chr3g0468201
rosa_laevigata	RLG00000024442
rosa_multiflora	Rmu_sc0004524.1_g000007
rosa_roxburghii	Rroxscaffold_6G00412920
rosa_rugosa	Rorug03G0094100
rosa_samantha	Rh3AG141800 Rh3BG163200 Rh3CG163300 Rh3DG163900
rosa_wichuraiana	Rw3G013420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	796
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	8 cut(s)	383, 754, 767, 1634, 1775, 1788, 1842, 2304
AcoI	YGGCCR	2 cut(s)	1544, 2197
AcsI	RAATTY	2 cut(s)	1042, 1111
AcuI	CTGAAG	9 cut(s)	266, 267, 390, 930, 1230, 1692, 1743, 2055, 2081
AcyI	GRCGYC	1 cut(s)	72
AdeI	CACNNNGTG	1 cut(s)	1939
AfaI	GTAC	5 cut(s)	105, 822, 1097, 1625, 1666
AfeI	AGCGCT	1 cut(s)	17
AfiI	CCNNNNNNNGG	4 cut(s)	456, 796, 1091, 1092
AflII	CTTAAG	1 cut(s)	1994
AflIII	ACRYGT	1 cut(s)	2437
AgsI	TTSAA	7 cut(s)	22, 182, 479, 673, 1331, 1522, 1602
AhlI	ACTAGT	1 cut(s)	350
AjiI	CACGTC	1 cut(s)	1318
AjnI	CCWGG	5 cut(s)	789, 903, 1009, 1101, 2230
Alw21I	GWGCWC	2 cut(s)	212, 1935
Alw26I	GTCTC	3 cut(s)	85, 807, 1856
AlwI	GGATC	8 cut(s)	383, 754, 767, 1634, 1775, 1788, 1842, 2304
AlwNI	CAGNNNCTG	1 cut(s)	796
Ama87I	CYCGRG	1 cut(s)	44
Aor51HI	AGCGCT	1 cut(s)	17
AoxI	GGCC	3 cut(s)	1544, 1744, 2197
ApeKI	GCWGC	4 cut(s)	1237, 1464, 1831, 1985
ApoI	RAATTY	2 cut(s)	1042, 1111
ArsI	GACNNNNNNTTYG	4 cut(s)	1175, 1207, 1595, 1627
Asp700I	GAANNNNTTC	2 cut(s)	173, 570
AspLEI	GCGC	3 cut(s)	18, 226, 1685
AspS9I	GGNCC	4 cut(s)	436, 447, 1385, 1789
AsuC2I	CCSGG	2 cut(s)	45, 46
AsuHPI	GGTGA	2 cut(s)	1390, 2432
AsuII	TTCGAA	1 cut(s)	1354
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	4 cut(s)	436, 447, 1385, 1789
AxyI	CCTNAGG	2 cut(s)	1146, 1785
BalI	TGGCCA	1 cut(s)	2199
BamHI	GGATCC	2 cut(s)	759, 1780
BauI	CACGAG	1 cut(s)	1934
BbsI	GAAGAC	2 cut(s)	615, 2115
Bbv12I	GWGCWC	2 cut(s)	212, 1935
BbvI	GCAGC	4 cut(s)	1224, 1476, 1818, 1972
BccI	CCATC	6 cut(s)	558, 565, 590, 695, 771, 1190
BcgI	CGANNNNNNTGC	2 cut(s)	1877, 1911
BciT130I	CCWGG	5 cut(s)	791, 905, 1011, 1103, 2232
BciVI	GTATCC	1 cut(s)	1708
BclI	TGATCA	1 cut(s)	730
BcnI	CCSGG	2 cut(s)	45, 46
BcoDI	GTCTC	3 cut(s)	85, 807, 1856
BcuI	ACTAGT	1 cut(s)	350
BfaI	CTAG	5 cut(s)	351, 602, 1472, 1578, 1727
BfmI	CTRYAG	2 cut(s)	252, 1392
BfoI	RGCGCY	2 cut(s)	19, 1686
BfrI	CTTAAG	1 cut(s)	1994
BfuI	GTATCC	1 cut(s)	1708
BglII	AGATCT	1 cut(s)	829
BisI	GCNGC	4 cut(s)	1238, 1465, 1832, 1986
BlpI	GCTNAGC	2 cut(s)	1617, 1944
BlsI	GCNGC	4 cut(s)	1239, 1466, 1833, 1987
BmcAI	AGTACT	1 cut(s)	1666
Bme1390I	CCNGG	7 cut(s)	45, 46, 791, 905, 1011, 1103, 2232
Bme18I	GGWCC	4 cut(s)	436, 447, 1385, 1789
BmeT110I	CYCGRG	1 cut(s)	44
BmgBI	CACGTC	1 cut(s)	1318
BmgT120I	GGNCC	4 cut(s)	436, 447, 1385, 1789
BmiI	GGNNCC	4 cut(s)	761, 788, 1450, 1782
BmrFI	CCNGG	7 cut(s)	45, 46, 791, 905, 1011, 1103, 2232
BmsI	GCATC	7 cut(s)	574, 613, 942, 1131, 1399, 1408, 1843
BpiI	GAAGAC	2 cut(s)	615, 2115
BpmI	CTGGAG	3 cut(s)	613, 818, 2192
Bpu1102I	GCTNAGC	2 cut(s)	1617, 1944
Bpu14I	TTCGAA	1 cut(s)	1354
BpuEI	CTTGAG	1 cut(s)	1982
BpuMI	CCSGG	2 cut(s)	45, 46
Bsa29I	ATCGAT	1 cut(s)	936
BsaHI	GRCGYC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	4 cut(s)	44, 782, 1851, 2219
BsaXI	ACNNNNNCTCC	2 cut(s)	2362, 2392
Bsc4I	CCNNNNNNNGG	4 cut(s)	456, 796, 1091, 1092
Bse118I	RCCGGY	1 cut(s)	1542
Bse1I	ACTGG	6 cut(s)	630, 801, 928, 1298, 1792, 2422
Bse21I	CCTNAGG	2 cut(s)	1146, 1785
Bse3DI	GCAATG	3 cut(s)	1113, 1995, 2180
BseBI	CCWGG	5 cut(s)	791, 905, 1011, 1103, 2232
BseCI	ATCGAT	1 cut(s)	936
BseDI	CCNNGG	4 cut(s)	44, 782, 1851, 2219
BseGI	GGATG	8 cut(s)	461, 601, 706, 751, 763, 1015, 1423, 1834
BseLI	CCNNNNNNNGG	4 cut(s)	456, 796, 1091, 1092
BseMI	GCAATG	3 cut(s)	1113, 1995, 2180
BseMII	CTCAG	9 cut(s)	215, 288, 312, 847, 1137, 1241, 1244, 1799, 1935
BseNI	ACTGG	6 cut(s)	630, 801, 928, 1298, 1792, 2422
BseRI	GAGGAG	3 cut(s)	155, 831, 1868
BseXI	GCAGC	4 cut(s)	1224, 1476, 1818, 1972
BsgI	GTGCAG	2 cut(s)	1851, 2450
Bsh1285I	CGRYCG	1 cut(s)	1039
BshFI	GGCC	3 cut(s)	1546, 1746, 2199
BshVI	ATCGAT	1 cut(s)	936
BsiEI	CGRYCG	1 cut(s)	1039
BsiHKAI	GWGCWC	2 cut(s)	212, 1935
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	2 cut(s)	45, 1543
BslFI	GGGAC	3 cut(s)	83, 1328, 1423
BslI	CCNNNNNNNGG	4 cut(s)	456, 796, 1091, 1092
BsmAI	GTCTC	3 cut(s)	85, 807, 1856
BsmFI	GGGAC	3 cut(s)	83, 1328, 1423
BsmI	GAATGC	1 cut(s)	492
BsnI	GGCC	3 cut(s)	1546, 1746, 2199
Bso31I	GGTCTC	1 cut(s)	85
BsoBI	CYCGRG	1 cut(s)	44
Bsp119I	TTCGAA	1 cut(s)	1354
Bsp1286I	GDGCHC	2 cut(s)	212, 1935
Bsp1407I	TGTACA	2 cut(s)	103, 1623
Bsp1720I	GCTNAGC	2 cut(s)	1617, 1944
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	3 cut(s)	1546, 1746, 2199
BspCNI	CTCAG	9 cut(s)	214, 289, 313, 846, 1138, 1240, 1245, 1798, 1936
BspDI	ATCGAT	1 cut(s)	936
BspHI	TCATGA	1 cut(s)	214
BspLI	GGNNCC	4 cut(s)	761, 788, 1450, 1782
BspPI	GGATC	8 cut(s)	383, 754, 767, 1634, 1775, 1788, 1842, 2304
BspQI	GCTCTTC	1 cut(s)	6
BspT104I	TTCGAA	1 cut(s)	1354
BspTI	CTTAAG	1 cut(s)	1994
BspTNI	GGTCTC	1 cut(s)	85
BsrDI	GCAATG	3 cut(s)	1113, 1995, 2180
BsrFI	RCCGGY	1 cut(s)	1542
BsrGI	TGTACA	2 cut(s)	103, 1623
BsrI	ACTGG	6 cut(s)	630, 801, 928, 1298, 1792, 2422
BssAI	RCCGGY	1 cut(s)	1542
BssECI	CCNNGG	4 cut(s)	44, 782, 1851, 2219
BssNI	GRCGYC	1 cut(s)	72
BssSI	CACGAG	1 cut(s)	1934
BssT1I	CCWWGG	1 cut(s)	782
Bst2BI	CACGAG	1 cut(s)	1934
Bst2UI	CCWGG	5 cut(s)	791, 905, 1011, 1103, 2232
Bst4CI	ACNGT	5 cut(s)	1037, 1552, 1628, 2223, 2321
Bst6I	CTCTTC	3 cut(s)	6, 2274, 2300
BstACI	GRCGYC	1 cut(s)	72
BstAFI	CTTAAG	1 cut(s)	1994
BstAPI	GCANNNNNTGC	2 cut(s)	1266, 1418
BstAUI	TGTACA	2 cut(s)	103, 1623
BstBI	TTCGAA	1 cut(s)	1354
BstC8I	GCNNGC	5 cut(s)	243, 726, 852, 1469, 1486
BstDSI	CCRYGG	1 cut(s)	2219
BstENI	CCTNNNNNAGG	1 cut(s)	454
BstF5I	GGATG	8 cut(s)	461, 601, 706, 751, 763, 1015, 1423, 1834
BstH2I	RGCGCY	2 cut(s)	19, 1686
BstHHI	GCGC	3 cut(s)	18, 226, 1685
BstMAI	GTCTC	3 cut(s)	85, 807, 1856
BstMCI	CGRYCG	1 cut(s)	1039
BstMWI	GCNNNNNNNGC	3 cut(s)	1266, 1418, 1930
BstNI	CCWGG	5 cut(s)	791, 905, 1011, 1103, 2232
BstNSI	RCATGY	3 cut(s)	1488, 2084, 2441
BstSCI	CCNGG	7 cut(s)	43, 44, 789, 903, 1009, 1101, 2230
BstSFI	CTRYAG	2 cut(s)	252, 1392
BstV1I	GCAGC	4 cut(s)	1224, 1476, 1818, 1972
BstV2I	GAAGAC	2 cut(s)	615, 2115
BstX2I	RGATCY	6 cut(s)	388, 759, 829, 1780, 1847, 2309
BstYI	RGATCY	6 cut(s)	388, 759, 829, 1780, 1847, 2309
Bsu15I	ATCGAT	1 cut(s)	936
Bsu36I	CCTNAGG	2 cut(s)	1146, 1785
BsuI	GTATCC	1 cut(s)	1708
BsuRI	GGCC	3 cut(s)	1546, 1746, 2199
BsuTUI	ATCGAT	1 cut(s)	936
BtgI	CCRYGG	1 cut(s)	2219
BtgZI	GCGATG	1 cut(s)	342
BtrI	CACGTC	1 cut(s)	1318
BtsCI	GGATG	8 cut(s)	461, 601, 706, 751, 763, 1015, 1423, 1834
BtsI	GCAGTG	1 cut(s)	1276
BtsIMutI	CAGTG	2 cut(s)	637, 1276
Cac8I	GCNNGC	5 cut(s)	243, 726, 852, 1469, 1486
CaiI	CAGNNNCTG	1 cut(s)	796
CciI	TCATGA	1 cut(s)	214
CfoI	GCGC	3 cut(s)	18, 226, 1685
Cfr10I	RCCGGY	1 cut(s)	1542
Cfr13I	GGNCC	4 cut(s)	436, 447, 1385, 1789
Cfr9I	CCCGGG	1 cut(s)	44
ClaI	ATCGAT	1 cut(s)	936
CseI	GACGC	1 cut(s)	80
Csp6I	GTAC	5 cut(s)	104, 821, 1096, 1624, 1665
CspCI	CAANNNNNGTGG	2 cut(s)	2208, 2243
CviQI	GTAC	5 cut(s)	104, 821, 1096, 1624, 1665
DraIII	CACNNNGTG	1 cut(s)	1939
EaeI	YGGCCR	2 cut(s)	1544, 2197
Eam1104I	CTCTTC	3 cut(s)	6, 2274, 2300
EarI	CTCTTC	3 cut(s)	6, 2274, 2300
EciI	GGCGGA	1 cut(s)	17
Eco130I	CCWWGG	1 cut(s)	782
Eco31I	GGTCTC	1 cut(s)	85
Eco47I	GGWCC	4 cut(s)	436, 447, 1385, 1789
Eco47III	AGCGCT	1 cut(s)	17
Eco57I	CTGAAG	9 cut(s)	266, 267, 390, 930, 1230, 1692, 1743, 2055, 2081
Eco81I	CCTNAGG	2 cut(s)	1146, 1785
Eco88I	CYCGRG	1 cut(s)	44
EcoNI	CCTNNNNNAGG	1 cut(s)	454
EcoRI	GAATTC	1 cut(s)	1042
EcoRII	CCWGG	5 cut(s)	789, 903, 1009, 1101, 2230
EcoT14I	CCWWGG	1 cut(s)	782
EcoT22I	ATGCAT	2 cut(s)	1490, 1813
ErhI	CCWWGG	1 cut(s)	782
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	3 cut(s)	83, 1328, 1423
FauNDI	CATATG	1 cut(s)	112
FbaI	TGATCA	1 cut(s)	730
Fnu4HI	GCNGC	4 cut(s)	1238, 1465, 1832, 1986
FokI	GGATG	8 cut(s)	448, 608, 713, 750, 758, 1002, 1430, 1821
Fsp4HI	GCNGC	4 cut(s)	1238, 1465, 1832, 1986
FspBI	CTAG	5 cut(s)	351, 602, 1472, 1578, 1727
GlaI	GCGC	3 cut(s)	17, 225, 1684
GluI	GCNGC	4 cut(s)	1238, 1465, 1832, 1986
GsuI	CTGGAG	3 cut(s)	613, 818, 2192
HaeII	RGCGCY	2 cut(s)	19, 1686
HaeIII	GGCC	3 cut(s)	1546, 1746, 2199
HapII	CCGG	2 cut(s)	45, 1543
HgaI	GACGC	1 cut(s)	80
HhaI	GCGC	3 cut(s)	18, 226, 1685
Hin1I	GRCGYC	1 cut(s)	72
Hin6I	GCGC	3 cut(s)	16, 224, 1683
HinP1I	GCGC	3 cut(s)	16, 224, 1683
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	3 cut(s)	675, 852, 2208
HpaII	CCGG	2 cut(s)	45, 1543
HphI	GGTGA	2 cut(s)	1390, 2432
Hpy166II	GTNNAC	2 cut(s)	64, 1818
Hpy188III	TCNNGA	9 cut(s)	215, 602, 620, 767, 1281, 1727, 1787, 1845, 2099
Hpy8I	GTNNAC	2 cut(s)	64, 1818
Hpy99I	CGWCG	3 cut(s)	879, 1187, 1902
HpyCH4III	ACNGT	5 cut(s)	1037, 1552, 1628, 2223, 2321
HpyCH4IV	ACGT	1 cut(s)	1317
HpyF10VI	GCNNNNNNNGC	3 cut(s)	1266, 1418, 1930
HpySE526I	ACGT	1 cut(s)	1317
Hsp92I	GRCGYC	1 cut(s)	72
HspAI	GCGC	3 cut(s)	16, 224, 1683
Ksp22I	TGATCA	1 cut(s)	730
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	2 cut(s)	1454, 1930
Lsp1109I	GCAGC	4 cut(s)	1224, 1476, 1818, 1972
LweI	GCATC	7 cut(s)	574, 613, 942, 1131, 1399, 1408, 1843
MaeI	CTAG	5 cut(s)	351, 602, 1472, 1578, 1727
MaeII	ACGT	1 cut(s)	1317
MaeIII	GTNAC	6 cut(s)	650, 713, 1396, 2029, 2294, 2342
MflI	RGATCY	6 cut(s)	388, 759, 829, 1780, 1847, 2309
MhlI	GDGCHC	2 cut(s)	212, 1935
MlsI	TGGCCA	1 cut(s)	2199
MluCI	AATT	8 cut(s)	236, 946, 1042, 1111, 1517, 1763, 1904, 2352
MluNI	TGGCCA	1 cut(s)	2199
MlyI	GAGTC	3 cut(s)	668, 809, 1303
MmeI	TCCRAC	4 cut(s)	1019, 1776, 1839, 1908
Mox20I	TGGCCA	1 cut(s)	2199
Mph1103I	ATGCAT	2 cut(s)	1490, 1813
MroXI	GAANNNNTTC	2 cut(s)	173, 570
MscI	TGGCCA	1 cut(s)	2199
MseI	TTAA	4 cut(s)	1632, 1740, 1907, 1995
Msp20I	TGGCCA	1 cut(s)	2199
MspA1I	CMGCKG	1 cut(s)	245
MspCI	CTTAAG	1 cut(s)	1994
MspI	CCGG	2 cut(s)	45, 1543
MspR9I	CCNGG	7 cut(s)	45, 46, 791, 905, 1011, 1103, 2232
Mva1269I	GAATGC	1 cut(s)	492
MvaI	CCWGG	5 cut(s)	791, 905, 1011, 1103, 2232
MwoI	GCNNNNNNNGC	3 cut(s)	1266, 1418, 1930
NciI	CCSGG	2 cut(s)	45, 46
NdeI	CATATG	1 cut(s)	112
NlaIV	GGNNCC	4 cut(s)	761, 788, 1450, 1782
NmeAIII	GCCGAG	1 cut(s)	2080
NmuCI	GTSAC	3 cut(s)	1396, 2294, 2342
NsiI	ATGCAT	2 cut(s)	1490, 1813
NspI	RCATGY	3 cut(s)	1488, 2084, 2441
NspV	TTCGAA	1 cut(s)	1354
PaeI	GCATGC	1 cut(s)	1488
PagI	TCATGA	1 cut(s)	214
PciI	ACATGT	1 cut(s)	2437
PciSI	GCTCTTC	1 cut(s)	6
PctI	GAATGC	1 cut(s)	492
PdmI	GAANNNNTTC	2 cut(s)	173, 570
PfeI	GAWTC	9 cut(s)	53, 1223, 1274, 1598, 1715, 1769, 1799, 2162, 2192
PflMI	CCANNNNNTGG	1 cut(s)	796
PfoI	TCCNGGA	1 cut(s)	1009
PkrI	GCNGC	4 cut(s)	1239, 1466, 1833, 1987
PleI	GAGTC	3 cut(s)	667, 808, 1302
PpsI	GAGTC	3 cut(s)	667, 808, 1302
PscI	ACATGT	1 cut(s)	2437
Psp6I	CCWGG	5 cut(s)	789, 903, 1009, 1101, 2230
PspGI	CCWGG	5 cut(s)	789, 903, 1009, 1101, 2230
PspN4I	GGNNCC	4 cut(s)	761, 788, 1450, 1782
PspPI	GGNCC	4 cut(s)	436, 447, 1385, 1789
PstNI	CAGNNNCTG	1 cut(s)	796
PsuI	RGATCY	6 cut(s)	388, 759, 829, 1780, 1847, 2309
PvuII	CAGCTG	1 cut(s)	245
RsaI	GTAC	5 cut(s)	105, 822, 1097, 1625, 1666
RsaNI	GTAC	5 cut(s)	104, 821, 1096, 1624, 1665
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	4 cut(s)	1632, 1740, 1907, 1995
SatI	GCNGC	4 cut(s)	1238, 1465, 1832, 1986
Sau96I	GGNCC	4 cut(s)	436, 447, 1385, 1789
ScaI	AGTACT	1 cut(s)	1666
SchI	GAGTC	3 cut(s)	668, 809, 1303
ScrFI	CCNGG	7 cut(s)	45, 46, 791, 905, 1011, 1103, 2232
SduI	GDGCHC	2 cut(s)	212, 1935
SfaNI	GCATC	7 cut(s)	574, 613, 942, 1131, 1399, 1408, 1843
SfcI	CTRYAG	2 cut(s)	252, 1392
SfuI	TTCGAA	1 cut(s)	1354
SinI	GGWCC	4 cut(s)	436, 447, 1385, 1789
SmaI	CCCGGG	1 cut(s)	46
SmlI	CTYRAG	2 cut(s)	1961, 1994
SmoI	CTYRAG	2 cut(s)	1961, 1994
SpeI	ACTAGT	1 cut(s)	350
SphI	GCATGC	1 cut(s)	1488
Sse9I	AATT	8 cut(s)	236, 946, 1042, 1111, 1517, 1763, 1904, 2352
SsiI	CCGC	1 cut(s)	28
SspI	AATATT	1 cut(s)	890
SspMI	CTAG	5 cut(s)	351, 602, 1472, 1578, 1727
StyD4I	CCNGG	7 cut(s)	43, 44, 789, 903, 1009, 1101, 2230
StyI	CCWWGG	1 cut(s)	782
TaaI	ACNGT	5 cut(s)	1037, 1552, 1628, 2223, 2321
TaiI	ACGT	1 cut(s)	1320
TaqI	TCGA	5 cut(s)	936, 1182, 1306, 1354, 1897
TasI	AATT	8 cut(s)	236, 946, 1042, 1111, 1517, 1763, 1904, 2352
TatI	WGTACW	3 cut(s)	103, 1623, 1664
TfiI	GAWTC	9 cut(s)	53, 1223, 1274, 1598, 1715, 1769, 1799, 2162, 2192
Tru1I	TTAA	4 cut(s)	1632, 1740, 1907, 1995
Tru9I	TTAA	4 cut(s)	1632, 1740, 1907, 1995
TscAI	CASTG	2 cut(s)	637, 1276
TseFI	GTSAC	3 cut(s)	1396, 2294, 2342
TseI	GCWGC	4 cut(s)	1237, 1464, 1831, 1985
Tsp45I	GTSAC	3 cut(s)	1396, 2294, 2342
TspGWI	ACGGA	2 cut(s)	23, 681
TspMI	CCCGGG	1 cut(s)	44
TspRI	CASTG	2 cut(s)	637, 1276
Van91I	CCANNNNNTGG	1 cut(s)	796
Vha464I	CTTAAG	1 cut(s)	1994
VpaK11BI	GGWCC	4 cut(s)	436, 447, 1385, 1789
XagI	CCTNNNNNAGG	1 cut(s)	454
XapI	RAATTY	2 cut(s)	1042, 1111
XbaI	TCTAGA	2 cut(s)	601, 1726
XceI	RCATGY	3 cut(s)	1488, 2084, 2441
XmaI	CCCGGG	1 cut(s)	44
XmnI	GAANNNNTTC	2 cut(s)	173, 570
XspI	CTAG	5 cut(s)	351, 602, 1472, 1578, 1727
ZrmI	AGTACT	1 cut(s)	1666
Zsp2I	ATGCAT	2 cut(s)	1490, 1813

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.