Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0011576

Physical Location & Seq

Genomic Coordinates Reverse (-)

35882331 .. 35889443

Gene Structure 7113 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024442

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2742 bp

ATGACGGAAGAGCGCTTCAATGTCCGCCACGCTCATAAGCCCGGGAGAATTTTGAGTTCTGCTTCAGGATTGGTTGGTCTTGGATTTGATGAGGTTCAGGATTGGCTAGTCTTGAATTTTGATGAGAATTTTTTTCCTACATATATTGTGATAGTTATGCTTTGCGTGACTCATACAGAATCTGATGTCAACAGGGACGCCTATGGGTTTGCTTTGAGACCTCAATATGTACAAACATATAAAGAATACGCTCATATCTACAAGGAGGAGGAAGATGAACGATCAGATAAATGGAAGAACTTCCTTGAACATATAGAAAAATCTTCTCAGTCGTGCTCTCATGAGAAGGCACATACAGAGGAATTGTCAGCTGAAGCTACAGAGCAGAAGGCATATAGAGAGGAACTTCAGGCTGAACCTACTGAGCAGAACGCAGAGATAGTTTCTGAGAGCAATGACGAAGGGAATGACAAAAGTAGTCTGAAATCTATTTCTGAAGGTTCATCAGAAAGAGATCCCAAAAAGGAGGCTCAACTTCCAAAAGAAACAGGAAAAAGTAAGGTCCAAACATGGACCTTCATTAGGTCATCCCTTAGTTCCATTGAAAATATGATGAGCATTCGTGTTAGGAAACAAAAGAATATGAAAGATGAGCATATAGTTGTGGATAAAGACCATCTTCCATCAATAGAAGAAGTTCCTTCACAAGATGCTTTTGAGGATGGTCAAGAGGAAGACATTTATCTTGATGCCTCCAGTGGAGCAACTTCTGTAAGTAACAGGGAATCTGACGGATTGAAAGCTTCTGGGGAAGATGAGGTTGTGGATGGTGGTGTCTGTAACAGTGTGCAAGCTGATCAGACAAACGAGGATGTGGCTAATGGGATCCATTCAGAACCCCTCTTTCCTTGGAGCCAGGAACTGGAGTCCCTTGTTCATGGAGGAGTTCCAAGAGATCTCAGGGGAGAGGTATGGCAAGCTTTTGTAGGTGTGAAGGCTCGTCGGGTGGAGAAATATTATTATGACCTCCTGGCTGAAGAAACAAATACTGGCGAAAGCATGGATAATGATAATTCATGTGGTGCTTTCAGAAAATGGAGAAAGCAGATTGAGAAGGATATACCACGTACCTTTCCAGGACATCCTGCATTAGATGAGAACGGTCGGAATTCATTGAGGCGTTTGCTTTTGGCTTATGCTCGTCATAACCCCTCTGTTGGGTACTGCCAGGCAATGAATTTCTTTGCAGGGTTATTGCTACTTCTGATGCCTGAGGAAAATGCTTTTTGGACTTTGGTGGGTATCATCGACGACTATTTTGATGGCTACTATACTGAAGAAATGATAGAATCTCAGGTGGACCAGCTTGTTTTTGAGGAACTAGTGCGAGAAAAGTTTCCAAAATTGGTGAATCATCTGGATTACTTGGGAGTCCAGGTGGGATGGATCATTGGACCCTGGTTTCTTTCCATTTTTGTAAATATGATTCCTTGGGAAAGCGTTATTCGAGTTTGGGACGTGCTTCTGTTTGAAGGAAATCGTGTTATGCTATTTCGAACAGCACTTGCTTTGTTGGAGTTATATGGTCCTGCTATAGTCACCACTAAAGATGCAGGGGATGCTATTGTTTTGTTTCAGTCCCTTGTTGGCTCCACATTTGATAGCAGCCAGCTAGTTTTGACTGCATGCATGGGATTTTTAGCTATAACCGAAACTAGATTGAAAGAGTTGAGAGATAAGCACCGGCCAACTGTATTAGAAGTAGTTGAGGAAAGAGCTAGGGCTAAGAAATGGAAGGATTCAAAAGGGCTATCAGCTAAGTTGTACAGTTTTAAGCATGATCCTACTATAACAGAAGAAAAAAGTACTACTGAAGAAGAAAGCGCCAATGGAGATGTATCTCAATCGAAATCTGATTCCTGTAATCTAGATGAAATGCTTAATGGCCTATCTCTTTCTTCAGAACTAGATTCCTTATCGGATCCTCAGGACCAGTCCGTGTTGACTTTGATGTGGGTTTCTGTTTCTGTTGCTTTATTTTACCATCTTTCTTCCGTAATGGAAGTATTTCTCATTTACCTAATTGGACTGAATTTTCTGACTATGGATAATAGTATTACTAAGGTATTCTACTTATCCGAGGAGTTGGAGACGGCACTTATGGAGATTGTCAGGCATGATAATCGACGAGAATTAAGTGCAAAGGTTGAGCAGTTGGAGCACGAGGTGGCTGAGCTACACCAAGCCCTTGAGGACAAGACAGAGCAAGAAGCTGCAATGCTTAAGGTATTGATGTTGGTAGAGCAAGAACAAAAGGTAACTGAAGAAGCCAGAATAAGTGCCGAGCAAGAAGCAATAACACAGAAACATGCACTTTATGTGCTTCAGGAAAAATATGACAAAGCTATGTCTTCACTTACTGAAATGGAAAAGAGGGTAAAAGTGGCAGAGTCAATGCTGGAGGCTACATTGCAATATGAATCTGGCCAAGCTAAAGCTTTATCTCCACGGTCTTTGCCAGGCTCAACGCAGGGAAATCCCACAAGGAAGATACCTCTTCTGTCATTTGGACTTGGTTGGCGTGACAGAATGAAGAGATCCAATGACAGTAAATCAACCAATGAACAAAGTGACCCACCGATTCCACAAGAGGAAACCACTCCCACTCCACAAGAGAAAACTTCTCCCACTCCACAGGAAAAAACTGGTGAGGAAGTGCAGGAACATGTAGAGGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

914

Amino Acids

103.54

Weight (kDa)

4.79

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	319 - 530	7e-55	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	391 - 545	8e-25	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15020
malus_domestica	MD04G1112400.v1.1 MD12G1129300.v1.1
prunus_persica	Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1
pyrus_communis	pycom04g10320 pycom12g12560
rosa_chinensis	RchiOBHm_Chr3g0468201
rosa_laevigata	RLG00000024442
rosa_multiflora	Rmu_sc0004524.1_g000007
rosa_roxburghii	Rroxscaffold_6G00412920
rosa_rugosa	Rorug03G0094100
rosa_samantha	Rh3AG141800 Rh3BG163200 Rh3CG163300 Rh3DG163900
rosa_wichuraiana	Rw3G013420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	922
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	8 cut(s)	509, 880, 893, 1454, 1835, 1976, 1989, 2592
AcoI	YGGCCR	2 cut(s)	1745, 2485
AcsI	RAATTY	6 cut(s)	48, 115, 127, 1168, 1237, 2092
AcyI	GRCGYC	1 cut(s)	198
AdeI	CACNNNGTG	1 cut(s)	2227
AfaI	GTAC	5 cut(s)	231, 1129, 1223, 1826, 1867
AfeI	AGCGCT	1 cut(s)	14
AfiI	CCNNNNNNNGG	4 cut(s)	582, 922, 1217, 1218
AflII	CTTAAG	1 cut(s)	2282
AflIII	ACRYGT	1 cut(s)	2725
AgsI	TTSAA	8 cut(s)	19, 115, 308, 605, 799, 1532, 1723, 1803
AhlI	ACTAGT	1 cut(s)	1381
AjiI	CACGTC	1 cut(s)	1519
AjnI	CCWGG	7 cut(s)	915, 1029, 1135, 1227, 1434, 1457, 2518
Alw21I	GWGCWC	2 cut(s)	338, 2223
Alw26I	GTCTC	2 cut(s)	211, 2144
AlwI	GGATC	8 cut(s)	509, 880, 893, 1454, 1835, 1976, 1989, 2592
AlwNI	CAGNNNCTG	2 cut(s)	182, 922
Ama87I	CYCGRG	1 cut(s)	41
Aor51HI	AGCGCT	1 cut(s)	14
AoxI	GGCC	3 cut(s)	1745, 1945, 2485
ApeKI	GCWGC	2 cut(s)	1665, 2273
ApoI	RAATTY	6 cut(s)	48, 115, 127, 1168, 1237, 2092
ArsI	GACNNNNNNTTYG	2 cut(s)	1301, 1333
Asp700I	GAANNNNTTC	4 cut(s)	299, 696, 1395, 2067
AspLEI	GCGC	2 cut(s)	15, 1886
AspS9I	GGNCC	6 cut(s)	562, 573, 1360, 1454, 1586, 1990
AsuC2I	CCSGG	2 cut(s)	42, 43
AsuHPI	GGTGA	3 cut(s)	1420, 1591, 2720
AsuII	TTCGAA	1 cut(s)	1555
AvaI	CYCGRG	1 cut(s)	41
AvaII	GGWCC	6 cut(s)	562, 573, 1360, 1454, 1586, 1990
AxyI	CCTNAGG	2 cut(s)	1272, 1986
BalI	TGGCCA	1 cut(s)	2487
BamHI	GGATCC	2 cut(s)	885, 1981
BauI	CACGAG	1 cut(s)	2222
BbsI	GAAGAC	2 cut(s)	741, 2403
Bbv12I	GWGCWC	2 cut(s)	338, 2223
BbvI	GCAGC	2 cut(s)	1677, 2260
BccI	CCATC	7 cut(s)	684, 691, 716, 821, 1316, 1437, 2052
BceAI	ACGGC	1 cut(s)	2169
BcgI	CGANNNNNNTGC	2 cut(s)	2165, 2199
BciT130I	CCWGG	7 cut(s)	917, 1031, 1137, 1229, 1436, 1459, 2520
BclI	TGATCA	1 cut(s)	856
BcnI	CCSGG	2 cut(s)	42, 43
BcoDI	GTCTC	2 cut(s)	211, 2144
BcuI	ACTAGT	1 cut(s)	1381
BfaI	CTAG	7 cut(s)	107, 1382, 1673, 1716, 1779, 1928, 1967
BfmI	CTRYAG	2 cut(s)	378, 1593
BfoI	RGCGCY	2 cut(s)	16, 1887
BfrI	CTTAAG	1 cut(s)	2282
BglII	AGATCT	1 cut(s)	955
BisI	GCNGC	2 cut(s)	1666, 2274
BlpI	GCTNAGC	1 cut(s)	2232
BlsI	GCNGC	2 cut(s)	1667, 2275
BmcAI	AGTACT	1 cut(s)	1867
Bme1390I	CCNGG	9 cut(s)	42, 43, 917, 1031, 1137, 1229, 1436, 1459, 2520
Bme18I	GGWCC	6 cut(s)	562, 573, 1360, 1454, 1586, 1990
BmeT110I	CYCGRG	1 cut(s)	41
BmgBI	CACGTC	1 cut(s)	1519
BmgT120I	GGNCC	6 cut(s)	562, 573, 1360, 1454, 1586, 1990
BmiI	GGNNCC	5 cut(s)	887, 914, 1456, 1651, 1983
BmrFI	CCNGG	9 cut(s)	42, 43, 917, 1031, 1137, 1229, 1436, 1459, 2520
BmsI	GCATC	5 cut(s)	700, 739, 1257, 1600, 1609
BpiI	GAAGAC	2 cut(s)	741, 2403
BpmI	CTGGAG	3 cut(s)	739, 944, 2480
Bpu1102I	GCTNAGC	1 cut(s)	2232
Bpu14I	TTCGAA	1 cut(s)	1555
BpuEI	CTTGAG	1 cut(s)	2270
BpuMI	CCSGG	2 cut(s)	42, 43
BsaAI	YACGTR	1 cut(s)	1127
BsaHI	GRCGYC	1 cut(s)	198
BsaI	GGTCTC	1 cut(s)	211
BsaJI	CCNNGG	6 cut(s)	41, 908, 1457, 1490, 2139, 2507
BsaXI	ACNNNNNCTCC	4 cut(s)	1422, 1452, 2650, 2680
Bsc4I	CCNNNNNNNGG	4 cut(s)	582, 922, 1217, 1218
Bse118I	RCCGGY	1 cut(s)	1743
Bse1I	ACTGG	5 cut(s)	756, 927, 1054, 1993, 2710
Bse21I	CCTNAGG	2 cut(s)	1272, 1986
Bse3DI	GCAATG	4 cut(s)	460, 1239, 2283, 2468
BseBI	CCWGG	7 cut(s)	917, 1031, 1137, 1229, 1436, 1459, 2520
BseDI	CCNNGG	6 cut(s)	41, 908, 1457, 1490, 2139, 2507
BseGI	GGATG	7 cut(s)	587, 727, 832, 877, 1141, 1448, 1624
BseLI	CCNNNNNNNGG	4 cut(s)	582, 922, 1217, 1218
BseMI	GCAATG	4 cut(s)	460, 1239, 2283, 2468
BseMII	CTCAG	8 cut(s)	341, 414, 438, 973, 1263, 1367, 2000, 2223
BseNI	ACTGG	5 cut(s)	756, 927, 1054, 1993, 2710
BseRI	GAGGAG	3 cut(s)	281, 957, 2156
BseXI	GCAGC	2 cut(s)	1677, 2260
BsgI	GTGCAG	1 cut(s)	2738
Bsh1285I	CGRYCG	1 cut(s)	1165
BshFI	GGCC	3 cut(s)	1747, 1947, 2487
BsiEI	CGRYCG	1 cut(s)	1165
BsiHKAI	GWGCWC	2 cut(s)	338, 2223
BsiHKCI	CYCGRG	1 cut(s)	41
BsiSI	CCGG	2 cut(s)	42, 1744
BslFI	GGGAC	4 cut(s)	209, 913, 1529, 1624
BslI	CCNNNNNNNGG	4 cut(s)	582, 922, 1217, 1218
BsmAI	GTCTC	2 cut(s)	211, 2144
BsmBI	CGTCTC	1 cut(s)	2144
BsmFI	GGGAC	4 cut(s)	209, 913, 1529, 1624
BsmI	GAATGC	1 cut(s)	618
BsnI	GGCC	3 cut(s)	1747, 1947, 2487
Bso31I	GGTCTC	1 cut(s)	211
BsoBI	CYCGRG	1 cut(s)	41
Bsp119I	TTCGAA	1 cut(s)	1555
Bsp1286I	GDGCHC	2 cut(s)	338, 2223
Bsp1407I	TGTACA	2 cut(s)	229, 1824
Bsp143I	GATC	9 cut(s)	281, 514, 856, 885, 955, 1446, 1840, 1981, 2597
Bsp1720I	GCTNAGC	1 cut(s)	2232
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	3 cut(s)	1747, 1947, 2487
BspCNI	CTCAG	8 cut(s)	340, 415, 439, 972, 1264, 1366, 1999, 2224
BspHI	TCATGA	1 cut(s)	340
BspLI	GGNNCC	5 cut(s)	887, 914, 1456, 1651, 1983
BspPI	GGATC	8 cut(s)	509, 880, 893, 1454, 1835, 1976, 1989, 2592
BspQI	GCTCTTC	1 cut(s)	3
BspT104I	TTCGAA	1 cut(s)	1555
BspTI	CTTAAG	1 cut(s)	2282
BspTNI	GGTCTC	1 cut(s)	211
BsrDI	GCAATG	4 cut(s)	460, 1239, 2283, 2468
BsrFI	RCCGGY	1 cut(s)	1743
BsrGI	TGTACA	2 cut(s)	229, 1824
BsrI	ACTGG	5 cut(s)	756, 927, 1054, 1993, 2710
BssAI	RCCGGY	1 cut(s)	1743
BssECI	CCNNGG	6 cut(s)	41, 908, 1457, 1490, 2139, 2507
BssMI	GATC	9 cut(s)	281, 514, 856, 885, 955, 1446, 1840, 1981, 2597
BssNI	GRCGYC	1 cut(s)	198
BssSI	CACGAG	1 cut(s)	2222
BssT1I	CCWWGG	2 cut(s)	908, 1490
Bst2BI	CACGAG	1 cut(s)	2222
Bst2UI	CCWGG	7 cut(s)	917, 1031, 1137, 1229, 1436, 1459, 2520
Bst4CI	ACNGT	6 cut(s)	845, 1163, 1753, 1829, 2511, 2609
Bst6I	CTCTTC	3 cut(s)	3, 2562, 2588
BstACI	GRCGYC	1 cut(s)	198
BstAFI	CTTAAG	1 cut(s)	2282
BstAPI	GCANNNNNTGC	1 cut(s)	1619
BstAUI	TGTACA	2 cut(s)	229, 1824
BstBAI	YACGTR	1 cut(s)	1127
BstBI	TTCGAA	1 cut(s)	1555
BstC8I	GCNNGC	4 cut(s)	852, 978, 1670, 1687
BstDSI	CCRYGG	1 cut(s)	2507
BstENI	CCTNNNNNAGG	1 cut(s)	580
BstF5I	GGATG	7 cut(s)	587, 727, 832, 877, 1141, 1448, 1624
BstH2I	RGCGCY	2 cut(s)	16, 1887
BstHHI	GCGC	2 cut(s)	15, 1886
BstKTI	GATC	9 cut(s)	284, 517, 859, 888, 958, 1449, 1843, 1984, 2600
BstMAI	GTCTC	2 cut(s)	211, 2144
BstMBI	GATC	9 cut(s)	281, 514, 856, 885, 955, 1446, 1840, 1981, 2597
BstMCI	CGRYCG	1 cut(s)	1165
BstMWI	GCNNNNNNNGC	2 cut(s)	1619, 2218
BstNI	CCWGG	7 cut(s)	917, 1031, 1137, 1229, 1436, 1459, 2520
BstNSI	RCATGY	3 cut(s)	1689, 2372, 2729
BstSCI	CCNGG	9 cut(s)	40, 41, 915, 1029, 1135, 1227, 1434, 1457, 2518
BstSFI	CTRYAG	2 cut(s)	378, 1593
BstV1I	GCAGC	2 cut(s)	1677, 2260
BstV2I	GAAGAC	2 cut(s)	741, 2403
BstX2I	RGATCY	5 cut(s)	514, 885, 955, 1981, 2597
BstYI	RGATCY	5 cut(s)	514, 885, 955, 1981, 2597
Bsu36I	CCTNAGG	2 cut(s)	1272, 1986
BsuRI	GGCC	3 cut(s)	1747, 1947, 2487
BtgI	CCRYGG	1 cut(s)	2507
BtrI	CACGTC	1 cut(s)	1519
BtsCI	GGATG	7 cut(s)	587, 727, 832, 877, 1141, 1448, 1624
BtsIMutI	CAGTG	2 cut(s)	763, 850
Cac8I	GCNNGC	4 cut(s)	852, 978, 1670, 1687
CaiI	CAGNNNCTG	2 cut(s)	182, 922
CciI	TCATGA	1 cut(s)	340
CfoI	GCGC	2 cut(s)	15, 1886
Cfr10I	RCCGGY	1 cut(s)	1743
Cfr13I	GGNCC	6 cut(s)	562, 573, 1360, 1454, 1586, 1990
Cfr9I	CCCGGG	1 cut(s)	41
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	5 cut(s)	230, 1128, 1222, 1825, 1866
CspCI	CAANNNNNGTGG	2 cut(s)	2496, 2531
CviQI	GTAC	5 cut(s)	230, 1128, 1222, 1825, 1866
DpnI	GATC	9 cut(s)	283, 516, 858, 887, 957, 1448, 1842, 1983, 2599
DpnII	GATC	9 cut(s)	281, 514, 856, 885, 955, 1446, 1840, 1981, 2597
DraIII	CACNNNGTG	1 cut(s)	2227
EaeI	YGGCCR	2 cut(s)	1745, 2485
Eam1104I	CTCTTC	3 cut(s)	3, 2562, 2588
EarI	CTCTTC	3 cut(s)	3, 2562, 2588
EciI	GGCGGA	1 cut(s)	14
Eco130I	CCWWGG	2 cut(s)	908, 1490
Eco31I	GGTCTC	1 cut(s)	211
Eco47I	GGWCC	6 cut(s)	562, 573, 1360, 1454, 1586, 1990
Eco47III	AGCGCT	1 cut(s)	14
Eco81I	CCTNAGG	2 cut(s)	1272, 1986
Eco88I	CYCGRG	1 cut(s)	41
EcoNI	CCTNNNNNAGG	1 cut(s)	580
EcoRI	GAATTC	1 cut(s)	1168
EcoRII	CCWGG	7 cut(s)	915, 1029, 1135, 1227, 1434, 1457, 2518
EcoT14I	CCWWGG	2 cut(s)	908, 1490
EcoT22I	ATGCAT	1 cut(s)	1691
ErhI	CCWWGG	2 cut(s)	908, 1490
Esp3I	CGTCTC	1 cut(s)	2144
FalI	AAGNNNNNCTT	2 cut(s)	663, 695
FaqI	GGGAC	4 cut(s)	209, 913, 1529, 1624
FbaI	TGATCA	1 cut(s)	856
Fnu4HI	GCNGC	2 cut(s)	1666, 2274
FokI	GGATG	7 cut(s)	574, 734, 839, 884, 1128, 1455, 1631
Fsp4HI	GCNGC	2 cut(s)	1666, 2274
FspBI	CTAG	7 cut(s)	107, 1382, 1673, 1716, 1779, 1928, 1967
GlaI	GCGC	2 cut(s)	14, 1885
GluI	GCNGC	2 cut(s)	1666, 2274
GsuI	CTGGAG	3 cut(s)	739, 944, 2480
HaeII	RGCGCY	2 cut(s)	16, 1887
HaeIII	GGCC	3 cut(s)	1747, 1947, 2487
HapII	CCGG	2 cut(s)	42, 1744
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	2 cut(s)	15, 1886
Hin1I	GRCGYC	1 cut(s)	198
Hin6I	GCGC	2 cut(s)	13, 1884
HinP1I	GCGC	2 cut(s)	13, 1884
HincII	GTYRAC	2 cut(s)	190, 2004
HindII	GTYRAC	2 cut(s)	190, 2004
HindIII	AAGCTT	3 cut(s)	801, 978, 2496
HpaII	CCGG	2 cut(s)	42, 1744
HphI	GGTGA	3 cut(s)	1420, 1591, 2720
Hpy166II	GTNNAC	3 cut(s)	190, 1360, 2004
Hpy8I	GTNNAC	3 cut(s)	190, 1360, 2004
Hpy99I	CGWCG	3 cut(s)	1005, 1313, 2190
HpyCH4III	ACNGT	6 cut(s)	845, 1163, 1753, 1829, 2511, 2609
HpyCH4IV	ACGT	2 cut(s)	1126, 1518
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1619, 2218
HpySE526I	ACGT	2 cut(s)	1126, 1518
Hsp92I	GRCGYC	1 cut(s)	198
HspAI	GCGC	2 cut(s)	13, 1884
Ksp22I	TGATCA	1 cut(s)	856
Kzo9I	GATC	9 cut(s)	281, 514, 856, 885, 955, 1446, 1840, 1981, 2597
LguI	GCTCTTC	1 cut(s)	3
LmnI	GCTCC	4 cut(s)	761, 912, 1655, 2218
Lsp1109I	GCAGC	2 cut(s)	1677, 2260
LweI	GCATC	5 cut(s)	700, 739, 1257, 1600, 1609
MaeI	CTAG	7 cut(s)	107, 1382, 1673, 1716, 1779, 1928, 1967
MaeII	ACGT	2 cut(s)	1126, 1518
MaeIII	GTNAC	7 cut(s)	166, 776, 839, 1597, 2317, 2582, 2630
MalI	GATC	9 cut(s)	283, 516, 858, 887, 957, 1448, 1842, 1983, 2599
MboI	GATC	9 cut(s)	281, 514, 856, 885, 955, 1446, 1840, 1981, 2597
MflI	RGATCY	5 cut(s)	514, 885, 955, 1981, 2597
MhlI	GDGCHC	2 cut(s)	338, 2223
MlsI	TGGCCA	1 cut(s)	2487
MluNI	TGGCCA	1 cut(s)	2487
MlyI	GAGTC	4 cut(s)	163, 935, 1440, 2459
MmeI	TCCRAC	4 cut(s)	1145, 1554, 2127, 2196
Mox20I	TGGCCA	1 cut(s)	2487
Mph1103I	ATGCAT	1 cut(s)	1691
MroXI	GAANNNNTTC	4 cut(s)	299, 696, 1395, 2067
MscI	TGGCCA	1 cut(s)	2487
MseI	TTAA	4 cut(s)	1833, 1941, 2195, 2283
Msp20I	TGGCCA	1 cut(s)	2487
MspA1I	CMGCKG	1 cut(s)	371
MspCI	CTTAAG	1 cut(s)	2282
MspI	CCGG	2 cut(s)	42, 1744
MspR9I	CCNGG	9 cut(s)	42, 43, 917, 1031, 1137, 1229, 1436, 1459, 2520
Mva1269I	GAATGC	1 cut(s)	618
MvaI	CCWGG	7 cut(s)	917, 1031, 1137, 1229, 1436, 1459, 2520
MwoI	GCNNNNNNNGC	2 cut(s)	1619, 2218
NciI	CCSGG	2 cut(s)	42, 43
NdeII	GATC	9 cut(s)	281, 514, 856, 885, 955, 1446, 1840, 1981, 2597
NlaIV	GGNNCC	5 cut(s)	887, 914, 1456, 1651, 1983
NmeAIII	GCCGAG	1 cut(s)	2368
NmuCI	GTSAC	4 cut(s)	166, 1597, 2582, 2630
NsiI	ATGCAT	1 cut(s)	1691
NspI	RCATGY	3 cut(s)	1689, 2372, 2729
NspV	TTCGAA	1 cut(s)	1555
PaeI	GCATGC	1 cut(s)	1689
PagI	TCATGA	1 cut(s)	340
PciI	ACATGT	1 cut(s)	2725
PciSI	GCTCTTC	1 cut(s)	3
PctI	GAATGC	1 cut(s)	618
PdmI	GAANNNNTTC	4 cut(s)	299, 696, 1395, 2067
PflMI	CCANNNNNTGG	1 cut(s)	922
PfoI	TCCNGGA	1 cut(s)	1135
PkrI	GCNGC	2 cut(s)	1667, 2275
PleI	GAGTC	4 cut(s)	163, 934, 1439, 2458
PpsI	GAGTC	4 cut(s)	163, 934, 1439, 2458
Ppu21I	YACGTR	1 cut(s)	1127
PscI	ACATGT	1 cut(s)	2725
Psp6I	CCWGG	7 cut(s)	915, 1029, 1135, 1227, 1434, 1457, 2518
PspGI	CCWGG	7 cut(s)	915, 1029, 1135, 1227, 1434, 1457, 2518
PspN4I	GGNNCC	5 cut(s)	887, 914, 1456, 1651, 1983
PspPI	GGNCC	6 cut(s)	562, 573, 1360, 1454, 1586, 1990
PstNI	CAGNNNCTG	2 cut(s)	182, 922
PsuI	RGATCY	5 cut(s)	514, 885, 955, 1981, 2597
PvuII	CAGCTG	1 cut(s)	371
RsaI	GTAC	5 cut(s)	231, 1129, 1223, 1826, 1867
RsaNI	GTAC	5 cut(s)	230, 1128, 1222, 1825, 1866
SapI	GCTCTTC	1 cut(s)	3
SaqAI	TTAA	4 cut(s)	1833, 1941, 2195, 2283
SatI	GCNGC	2 cut(s)	1666, 2274
Sau3AI	GATC	9 cut(s)	281, 514, 856, 885, 955, 1446, 1840, 1981, 2597
Sau96I	GGNCC	6 cut(s)	562, 573, 1360, 1454, 1586, 1990
ScaI	AGTACT	1 cut(s)	1867
SchI	GAGTC	4 cut(s)	163, 935, 1440, 2459
ScrFI	CCNGG	9 cut(s)	42, 43, 917, 1031, 1137, 1229, 1436, 1459, 2520
SduI	GDGCHC	2 cut(s)	338, 2223
SfaNI	GCATC	5 cut(s)	700, 739, 1257, 1600, 1609
SfcI	CTRYAG	2 cut(s)	378, 1593
SfuI	TTCGAA	1 cut(s)	1555
SinI	GGWCC	6 cut(s)	562, 573, 1360, 1454, 1586, 1990
SmaI	CCCGGG	1 cut(s)	43
SmlI	CTYRAG	2 cut(s)	2249, 2282
SmoI	CTYRAG	2 cut(s)	2249, 2282
SpeI	ACTAGT	1 cut(s)	1381
SphI	GCATGC	1 cut(s)	1689
SsiI	CCGC	1 cut(s)	25
SspI	AATATT	1 cut(s)	1016
SspMI	CTAG	7 cut(s)	107, 1382, 1673, 1716, 1779, 1928, 1967
StyD4I	CCNGG	9 cut(s)	40, 41, 915, 1029, 1135, 1227, 1434, 1457, 2518
StyI	CCWWGG	2 cut(s)	908, 1490
TaaI	ACNGT	6 cut(s)	845, 1163, 1753, 1829, 2511, 2609
TaiI	ACGT	2 cut(s)	1129, 1521
TaqI	TCGA	5 cut(s)	1308, 1507, 1555, 1907, 2185
TatI	WGTACW	3 cut(s)	229, 1824, 1865
Tru1I	TTAA	4 cut(s)	1833, 1941, 2195, 2283
Tru9I	TTAA	4 cut(s)	1833, 1941, 2195, 2283
TscAI	CASTG	2 cut(s)	763, 850
TseFI	GTSAC	4 cut(s)	166, 1597, 2582, 2630
TseI	GCWGC	2 cut(s)	1665, 2273
Tsp45I	GTSAC	4 cut(s)	166, 1597, 2582, 2630
TspGWI	ACGGA	4 cut(s)	20, 807, 1987, 2044
TspMI	CCCGGG	1 cut(s)	41
TspRI	CASTG	2 cut(s)	763, 850
Van91I	CCANNNNNTGG	1 cut(s)	922
Vha464I	CTTAAG	1 cut(s)	2282
VpaK11BI	GGWCC	6 cut(s)	562, 573, 1360, 1454, 1586, 1990
XagI	CCTNNNNNAGG	1 cut(s)	580
XapI	RAATTY	6 cut(s)	48, 115, 127, 1168, 1237, 2092
XbaI	TCTAGA	1 cut(s)	1927
XceI	RCATGY	3 cut(s)	1689, 2372, 2729
XmaI	CCCGGG	1 cut(s)	41
XmnI	GAANNNNTTC	4 cut(s)	299, 696, 1395, 2067
XspI	CTAG	7 cut(s)	107, 1382, 1673, 1716, 1779, 1928, 1967
ZrmI	AGTACT	1 cut(s)	1867
Zsp2I	ATGCAT	1 cut(s)	1691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.