Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0011576

Physical Location & Seq

Genomic Coordinates Forward (+)

13754034 .. 13761233

Gene Structure 7200 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG163300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2286 bp

ATGATGACGGAAGAGCGCTTCAATGTCCGCCACGCTCATAAGCCCAGGAGGGACGCCTATGGGTTTGCTTTGAGACCTCAATATGTACAAACATATCAAGAATACGCTCATATCTACAAGGAGGAGGAAGATGAACGATCAGATAAATGGAAGAACTTCCTTGAACATATAGAAAAATCTTCCCAGTCATGCTCTCATGAGAAGGCACATACAGAGGAATTGCCAGCTGAAGCTACAGAGCAGAAGGCATATAGAGAGGAACTTCAGGCTGAACCTACTGAGCAGAAAGCAGAGATAGTTTCTGAGAGCGATGAGGAAGGGAATGACAAAAGTAGTCTGAAATCTATTTCTGAAGGTTCATCAGAAAGAGATCCCAAAAAGGAGGCTCAACTTCCAAAAGAAACAGGAAAAAGTAAGGTCCAAACATGGACCTTCATTAGGTCATCCCTTAGTTCCATTGAAAATATGATGAGCATTCGTGTTAGGAAACAAAAGAATATGAAAGATGAGCATATAGTTGTGGATAAAGACCATCTTCCATCAATAGAAGAAGTTCCTTCACAAGATGCTTTTGAGGATGGTCAAGAGGAAGACATTTATCTTGATGCCTCCAGTGGAGCAACTTCTGTAAGTAACAGAGAATCTGACGGATTGAAAGCTTCTGGGGAAGATGAGGTTGTGGATGGTGGTGTCTATAACAGTGTGCAAGCTGATCAGACAAAAGAGGATGTGGCTAATGGGATCCATCCAGAACCTCTCTTTCCTTGGAACCAGGAACTGGAGTCCCTTGTTCATGGAGGAGTTCCAAGAGATCTCAGGGGAGAGGTATGGCAAGCTTTTGTAGGTGTGAAGGCTCGTCGGGTGGAGAAATATTATTATGACCTCCTGGCTGAAGAAACAGATACTGGCGAAAGCATGGATAATGATAATTCATGTGGTGCTTTCAGAAAATGGAGAAAGCAGATTGAGAAGGACATACCACGTACCTTTCCAGGACATCCTGCATTAGATGAGAACGGTCGGAATTCATTGAGGCGTTTGCTTTTGGCTTATGCTCGTCATAACCCCTCTGTTGGGTACTGCCAGGCAATGAATTTCTTTGCAGGGTTATTGCTACTTCTGATGCCTGAGGAAAATGCTTTTTGGACTTTGGTGGGTATCATCGACGACTATTTTGATGGCTACTATACTGAAGAAATGATAGAATCTCAGGTGGACCAGCTTGTTTTTGAGGAACTAGTGCGAGAAAAGTTTCCAAAATTGGTGAATCATCTGGATTACTTGGGAGTCCAGGTGGGATGGATCATTGGACCCTGGTTTCTTTCCATTTTTGTAAATATGATTCCTTGGGAAAGCGTTATTCGAGTTTGGGACGTGCTTCTGTTTGAAGGAAATCGTGTTATGCTATTTCGAACAGCACTTGCTTTATTGGAGTTATATGGTCCTGCTATAGTCACCACTAAAGATGCAGGGGATGCTATTGTTTTGTTTCAGTCCCTTGTTGGCTCCACATTTGATAGCAGCCAGCTAGTTTTGACTGCATGCATGGGATTTTTAGCTATAACTGAAACTAGATTGAAAGAGTTGAGAGATAAGCACCGGCCAACTGTATTAGAAGTAGTTGAGGAAAGAGCTAGGGCTAAGAAATGGAAGGATTCAAAAGGGCTATCAGCTAAGCTATCCGAGGAGTTGGAGACGGCACTTATGGAGATTGTCAGGCATGATAATCGACGAGAATTAAGTGCAAAGGTTGAGCAGTTGGAGCACGAGGTGGCTGAGCTACACCAAGCCCTTGAGGACAAGACAGAGCAAGAAGCTGCAATGCTTAAGGTATTGATGTTGGTAGAGCAAGAACAAAAGGTAACTGAAGAAGCCAGAATAAGTGCCGAACAAGAAGCAATAACACAGAAACATGCACTTTATGTGCTTCAGGAAAAATATGACAAAGCTATGTCTTCACTTACTGAAATGGAAAAGAGGGTAAAAGTGGCAGAATCAATGCTGGAGGCTACATTGCAATATGAATCTGGCCAAGCTAAAGCTTTATCTCCACGGTCTTTGCCAGGCTCAACGCAGGGAAATCCCACAAGGAAGATACCTCTTCTGTCATTTGGACTTGGTTGGCGTGACAGAATGAAGAGATCCAATGACAGTAAATCAACCAATGAACAAAGTGACCCACCAATTCCACAAGAGGAAACCACTCCCACTCCACAAGAGAAAACTTCTCCCACTCCACAGGAAAAAACTGGTGAGGAAGTGCAGGAACATGTAGAGGGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0006810 GO:0006886 GO:0008047 GO:0008104 GO:0008150 GO:0012505 GO:0015031 GO:0015833 GO:0017016 GO:0017137 GO:0019899 GO:0030234 GO:0030695 GO:0031267 GO:0031338 GO:0032879 GO:0033036 GO:0033043 GO:0034613 GO:0042886 GO:0043085 GO:0043087 GO:0043547 GO:0044093 GO:0044464 GO:0045184 GO:0046907 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060589 GO:0060627 GO:0065007 GO:0065009 GO:0070727 GO:0071702 GO:0071705 GO:0090630 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RabGAP-TBC

Protein Analysis

761

Amino Acids

86.81

Weight (kDa)

4.97

Isoelectric Point (pI)

53.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RabGAP-TBC	PF00566	271 - 482	6.5e-55	Rab-GTPase-TBC domain
RabGap-TBC_2	PF23436	343 - 497	5.9e-25	RabGAP TBC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011576)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g15020
malus_domestica	MD04G1112400.v1.1 MD12G1129300.v1.1
prunus_persica	Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1 Prupe.6G244600_v2.0.a1
pyrus_communis	pycom04g10320 pycom12g12560
rosa_chinensis	RchiOBHm_Chr3g0468201
rosa_laevigata	RLG00000024442
rosa_multiflora	Rmu_sc0004524.1_g000007
rosa_roxburghii	Rroxscaffold_6G00412920
rosa_rugosa	Rorug03G0094100
rosa_samantha	Rh3AG141800 Rh3BG163200 Rh3CG163300 Rh3DG163900
rosa_wichuraiana	Rw3G013420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	778
AciI	CCGC	1 cut(s)	28
AclWI	GGATC	5 cut(s)	365, 736, 749, 1310, 2136
AcoI	YGGCCR	2 cut(s)	1601, 2029
AcsI	RAATTY	2 cut(s)	1024, 1093
AcuI	CTGAAG	7 cut(s)	248, 249, 372, 912, 1212, 1887, 1913
AcyI	GRCGYC	1 cut(s)	54
AdeI	CACNNNGTG	1 cut(s)	1771
AfaI	GTAC	3 cut(s)	87, 985, 1079
AfeI	AGCGCT	1 cut(s)	17
AfiI	CCNNNNNNNGG	4 cut(s)	438, 778, 1073, 1074
AflII	CTTAAG	1 cut(s)	1826
AflIII	ACRYGT	1 cut(s)	2269
AgsI	TTSAA	7 cut(s)	22, 164, 461, 655, 1388, 1579, 1659
AhlI	ACTAGT	1 cut(s)	1237
AjiI	CACGTC	1 cut(s)	1375
AjnI	CCWGG	8 cut(s)	44, 771, 885, 991, 1083, 1290, 1313, 2062
Alw21I	GWGCWC	1 cut(s)	1767
Alw26I	GTCTC	2 cut(s)	67, 1688
AlwI	GGATC	5 cut(s)	365, 736, 749, 1310, 2136
AlwNI	CAGNNNCTG	2 cut(s)	778, 905
Aor51HI	AGCGCT	1 cut(s)	17
AoxI	GGCC	2 cut(s)	1601, 2029
ApeKI	GCWGC	2 cut(s)	1521, 1817
ApoI	RAATTY	2 cut(s)	1024, 1093
ArsI	GACNNNNNNTTYG	2 cut(s)	1157, 1189
Asp700I	GAANNNNTTC	3 cut(s)	155, 552, 1251
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	5 cut(s)	418, 429, 1216, 1310, 1442
AsuHPI	GGTGA	3 cut(s)	1276, 1447, 2264
AsuII	TTCGAA	1 cut(s)	1411
AvaII	GGWCC	5 cut(s)	418, 429, 1216, 1310, 1442
AxyI	CCTNAGG	1 cut(s)	1128
BalI	TGGCCA	1 cut(s)	2031
BamHI	GGATCC	1 cut(s)	741
BauI	CACGAG	1 cut(s)	1766
BbsI	GAAGAC	2 cut(s)	597, 1947
Bbv12I	GWGCWC	1 cut(s)	1767
BbvI	GCAGC	2 cut(s)	1533, 1804
BccI	CCATC	7 cut(s)	540, 547, 572, 677, 753, 1172, 1293
BceAI	ACGGC	1 cut(s)	1713
BcgI	CGANNNNNNTGC	2 cut(s)	1709, 1743
BciT130I	CCWGG	8 cut(s)	46, 773, 887, 993, 1085, 1292, 1315, 2064
BclI	TGATCA	1 cut(s)	712
BcoDI	GTCTC	2 cut(s)	67, 1688
BcuI	ACTAGT	1 cut(s)	1237
BfaI	CTAG	4 cut(s)	1238, 1529, 1572, 1635
BfmI	CTRYAG	2 cut(s)	234, 1449
BfoI	RGCGCY	1 cut(s)	19
BfrI	CTTAAG	1 cut(s)	1826
BglII	AGATCT	1 cut(s)	811
BisI	GCNGC	2 cut(s)	1522, 1818
BlpI	GCTNAGC	2 cut(s)	1674, 1776
BlsI	GCNGC	2 cut(s)	1523, 1819
Bme1390I	CCNGG	8 cut(s)	46, 773, 887, 993, 1085, 1292, 1315, 2064
Bme18I	GGWCC	5 cut(s)	418, 429, 1216, 1310, 1442
BmgBI	CACGTC	1 cut(s)	1375
BmgT120I	GGNCC	5 cut(s)	418, 429, 1216, 1310, 1442
BmiI	GGNNCC	4 cut(s)	743, 770, 1312, 1507
BmrFI	CCNGG	8 cut(s)	46, 773, 887, 993, 1085, 1292, 1315, 2064
BmrI	ACTGGG	1 cut(s)	178
BmsI	GCATC	5 cut(s)	556, 595, 1113, 1456, 1465
BmuI	ACTGGG	1 cut(s)	178
BpiI	GAAGAC	2 cut(s)	597, 1947
BpmI	CTGGAG	3 cut(s)	595, 800, 2024
Bpu1102I	GCTNAGC	2 cut(s)	1674, 1776
Bpu14I	TTCGAA	1 cut(s)	1411
BpuEI	CTTGAG	1 cut(s)	1814
BsaAI	YACGTR	1 cut(s)	983
BsaHI	GRCGYC	1 cut(s)	54
BsaI	GGTCTC	1 cut(s)	67
BsaJI	CCNNGG	6 cut(s)	44, 764, 1313, 1346, 1683, 2051
BsaXI	ACNNNNNCTCC	4 cut(s)	1278, 1308, 2194, 2224
Bsc4I	CCNNNNNNNGG	4 cut(s)	438, 778, 1073, 1074
Bse118I	RCCGGY	1 cut(s)	1599
Bse1I	ACTGG	5 cut(s)	184, 612, 783, 910, 2254
Bse21I	CCTNAGG	1 cut(s)	1128
Bse3DI	GCAATG	3 cut(s)	1095, 1827, 2012
BseBI	CCWGG	8 cut(s)	46, 773, 887, 993, 1085, 1292, 1315, 2064
BseDI	CCNNGG	6 cut(s)	44, 764, 1313, 1346, 1683, 2051
BseGI	GGATG	8 cut(s)	443, 583, 688, 733, 745, 997, 1304, 1480
BseLI	CCNNNNNNNGG	4 cut(s)	438, 778, 1073, 1074
BseMI	GCAATG	3 cut(s)	1095, 1827, 2012
BseMII	CTCAG	6 cut(s)	270, 294, 829, 1119, 1223, 1767
BseNI	ACTGG	5 cut(s)	184, 612, 783, 910, 2254
BseRI	GAGGAG	3 cut(s)	137, 813, 1700
BseXI	GCAGC	2 cut(s)	1533, 1804
BsgI	GTGCAG	1 cut(s)	2282
Bsh1285I	CGRYCG	1 cut(s)	1021
BshFI	GGCC	2 cut(s)	1603, 2031
BsiEI	CGRYCG	1 cut(s)	1021
BsiHKAI	GWGCWC	1 cut(s)	1767
BsiSI	CCGG	1 cut(s)	1600
BslFI	GGGAC	4 cut(s)	65, 769, 1385, 1480
BslI	CCNNNNNNNGG	4 cut(s)	438, 778, 1073, 1074
BsmAI	GTCTC	2 cut(s)	67, 1688
BsmBI	CGTCTC	1 cut(s)	1688
BsmFI	GGGAC	4 cut(s)	65, 769, 1385, 1480
BsmI	GAATGC	1 cut(s)	474
BsnI	GGCC	2 cut(s)	1603, 2031
Bso31I	GGTCTC	1 cut(s)	67
Bsp119I	TTCGAA	1 cut(s)	1411
Bsp1286I	GDGCHC	1 cut(s)	1767
Bsp1407I	TGTACA	1 cut(s)	85
Bsp143I	GATC	7 cut(s)	137, 370, 712, 741, 811, 1302, 2141
Bsp1720I	GCTNAGC	2 cut(s)	1674, 1776
BspACI	CCGC	1 cut(s)	28
BspANI	GGCC	2 cut(s)	1603, 2031
BspCNI	CTCAG	6 cut(s)	271, 295, 828, 1120, 1222, 1768
BspHI	TCATGA	1 cut(s)	196
BspLI	GGNNCC	4 cut(s)	743, 770, 1312, 1507
BspPI	GGATC	5 cut(s)	365, 736, 749, 1310, 2136
BspQI	GCTCTTC	1 cut(s)	6
BspT104I	TTCGAA	1 cut(s)	1411
BspTI	CTTAAG	1 cut(s)	1826
BspTNI	GGTCTC	1 cut(s)	67
BsrDI	GCAATG	3 cut(s)	1095, 1827, 2012
BsrFI	RCCGGY	1 cut(s)	1599
BsrGI	TGTACA	1 cut(s)	85
BsrI	ACTGG	5 cut(s)	184, 612, 783, 910, 2254
BssAI	RCCGGY	1 cut(s)	1599
BssECI	CCNNGG	6 cut(s)	44, 764, 1313, 1346, 1683, 2051
BssMI	GATC	7 cut(s)	137, 370, 712, 741, 811, 1302, 2141
BssNI	GRCGYC	1 cut(s)	54
BssSI	CACGAG	1 cut(s)	1766
BssT1I	CCWWGG	2 cut(s)	764, 1346
Bst2BI	CACGAG	1 cut(s)	1766
Bst2UI	CCWGG	8 cut(s)	46, 773, 887, 993, 1085, 1292, 1315, 2064
Bst4CI	ACNGT	5 cut(s)	701, 1019, 1609, 2055, 2153
Bst6I	CTCTTC	3 cut(s)	6, 2106, 2132
BstACI	GRCGYC	1 cut(s)	54
BstAFI	CTTAAG	1 cut(s)	1826
BstAPI	GCANNNNNTGC	1 cut(s)	1475
BstAUI	TGTACA	1 cut(s)	85
BstBAI	YACGTR	1 cut(s)	983
BstBI	TTCGAA	1 cut(s)	1411
BstC8I	GCNNGC	5 cut(s)	225, 708, 834, 1526, 1543
BstDEI	CTNAG	9 cut(s)	279, 303, 449, 815, 1128, 1209, 1641, 1674, 1776
BstDSI	CCRYGG	1 cut(s)	2051
BstENI	CCTNNNNNAGG	1 cut(s)	436
BstF5I	GGATG	8 cut(s)	443, 583, 688, 733, 745, 997, 1304, 1480
BstH2I	RGCGCY	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	7 cut(s)	140, 373, 715, 744, 814, 1305, 2144
BstMAI	GTCTC	2 cut(s)	67, 1688
BstMBI	GATC	7 cut(s)	137, 370, 712, 741, 811, 1302, 2141
BstMCI	CGRYCG	1 cut(s)	1021
BstMWI	GCNNNNNNNGC	2 cut(s)	1475, 1762
BstNI	CCWGG	8 cut(s)	46, 773, 887, 993, 1085, 1292, 1315, 2064
BstNSI	RCATGY	3 cut(s)	1545, 1916, 2273
BstSCI	CCNGG	8 cut(s)	44, 771, 885, 991, 1083, 1290, 1313, 2062
BstSFI	CTRYAG	2 cut(s)	234, 1449
BstV1I	GCAGC	2 cut(s)	1533, 1804
BstV2I	GAAGAC	2 cut(s)	597, 1947
BstX2I	RGATCY	4 cut(s)	370, 741, 811, 2141
BstYI	RGATCY	4 cut(s)	370, 741, 811, 2141
Bsu36I	CCTNAGG	1 cut(s)	1128
BsuRI	GGCC	2 cut(s)	1603, 2031
BtgI	CCRYGG	1 cut(s)	2051
BtgZI	GCGATG	1 cut(s)	324
BtrI	CACGTC	1 cut(s)	1375
BtsCI	GGATG	8 cut(s)	443, 583, 688, 733, 745, 997, 1304, 1480
BtsIMutI	CAGTG	2 cut(s)	619, 706
Cac8I	GCNNGC	5 cut(s)	225, 708, 834, 1526, 1543
CaiI	CAGNNNCTG	2 cut(s)	778, 905
CciI	TCATGA	1 cut(s)	196
CfoI	GCGC	1 cut(s)	18
Cfr10I	RCCGGY	1 cut(s)	1599
Cfr13I	GGNCC	5 cut(s)	418, 429, 1216, 1310, 1442
CseI	GACGC	1 cut(s)	62
Csp6I	GTAC	3 cut(s)	86, 984, 1078
CspCI	CAANNNNNGTGG	2 cut(s)	2040, 2075
CviQI	GTAC	3 cut(s)	86, 984, 1078
DdeI	CTNAG	9 cut(s)	279, 303, 449, 815, 1128, 1209, 1641, 1674, 1776
DpnI	GATC	7 cut(s)	139, 372, 714, 743, 813, 1304, 2143
DpnII	GATC	7 cut(s)	137, 370, 712, 741, 811, 1302, 2141
DraIII	CACNNNGTG	1 cut(s)	1771
EaeI	YGGCCR	2 cut(s)	1601, 2029
Eam1104I	CTCTTC	3 cut(s)	6, 2106, 2132
EarI	CTCTTC	3 cut(s)	6, 2106, 2132
EciI	GGCGGA	1 cut(s)	17
Eco130I	CCWWGG	2 cut(s)	764, 1346
Eco31I	GGTCTC	1 cut(s)	67
Eco47I	GGWCC	5 cut(s)	418, 429, 1216, 1310, 1442
Eco47III	AGCGCT	1 cut(s)	17
Eco57I	CTGAAG	7 cut(s)	248, 249, 372, 912, 1212, 1887, 1913
Eco81I	CCTNAGG	1 cut(s)	1128
EcoNI	CCTNNNNNAGG	1 cut(s)	436
EcoRI	GAATTC	1 cut(s)	1024
EcoRII	CCWGG	8 cut(s)	44, 771, 885, 991, 1083, 1290, 1313, 2062
EcoT14I	CCWWGG	2 cut(s)	764, 1346
EcoT22I	ATGCAT	1 cut(s)	1547
ErhI	CCWWGG	2 cut(s)	764, 1346
Esp3I	CGTCTC	1 cut(s)	1688
FalI	AAGNNNNNCTT	2 cut(s)	519, 551
FaqI	GGGAC	4 cut(s)	65, 769, 1385, 1480
FbaI	TGATCA	1 cut(s)	712
Fnu4HI	GCNGC	2 cut(s)	1522, 1818
FokI	GGATG	8 cut(s)	430, 590, 695, 732, 740, 984, 1311, 1487
Fsp4HI	GCNGC	2 cut(s)	1522, 1818
FspBI	CTAG	4 cut(s)	1238, 1529, 1572, 1635
GlaI	GCGC	1 cut(s)	17
GluI	GCNGC	2 cut(s)	1522, 1818
GsuI	CTGGAG	3 cut(s)	595, 800, 2024
HaeII	RGCGCY	1 cut(s)	19
HaeIII	GGCC	2 cut(s)	1603, 2031
HapII	CCGG	1 cut(s)	1600
HgaI	GACGC	1 cut(s)	62
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	54
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HindIII	AAGCTT	3 cut(s)	657, 834, 2040
HinfI	GANTC	9 cut(s)	641, 782, 1205, 1267, 1287, 1342, 1655, 1994, 2024
HpaII	CCGG	1 cut(s)	1600
HphI	GGTGA	3 cut(s)	1276, 1447, 2264
Hpy166II	GTNNAC	1 cut(s)	1216
Hpy188III	TCNNGA	7 cut(s)	98, 197, 584, 602, 749, 1274, 1931
Hpy8I	GTNNAC	1 cut(s)	1216
Hpy99I	CGWCG	3 cut(s)	861, 1169, 1734
HpyCH4III	ACNGT	5 cut(s)	701, 1019, 1609, 2055, 2153
HpyCH4IV	ACGT	2 cut(s)	982, 1374
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1475, 1762
HpyF3I	CTNAG	9 cut(s)	279, 303, 449, 815, 1128, 1209, 1641, 1674, 1776
HpySE526I	ACGT	2 cut(s)	982, 1374
Hsp92I	GRCGYC	1 cut(s)	54
HspAI	GCGC	1 cut(s)	16
Ksp22I	TGATCA	1 cut(s)	712
Kzo9I	GATC	7 cut(s)	137, 370, 712, 741, 811, 1302, 2141
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	3 cut(s)	617, 1511, 1762
Lsp1109I	GCAGC	2 cut(s)	1533, 1804
LweI	GCATC	5 cut(s)	556, 595, 1113, 1456, 1465
MaeI	CTAG	4 cut(s)	1238, 1529, 1572, 1635
MaeII	ACGT	2 cut(s)	982, 1374
MaeIII	GTNAC	5 cut(s)	632, 1453, 1861, 2126, 2174
MalI	GATC	7 cut(s)	139, 372, 714, 743, 813, 1304, 2143
MboI	GATC	7 cut(s)	137, 370, 712, 741, 811, 1302, 2141
MflI	RGATCY	4 cut(s)	370, 741, 811, 2141
MhlI	GDGCHC	1 cut(s)	1767
MlsI	TGGCCA	1 cut(s)	2031
MluCI	AATT	7 cut(s)	218, 928, 1024, 1093, 1259, 1736, 2184
MluNI	TGGCCA	1 cut(s)	2031
MlyI	GAGTC	2 cut(s)	791, 1296
MmeI	TCCRAC	3 cut(s)	1001, 1671, 1740
Mox20I	TGGCCA	1 cut(s)	2031
Mph1103I	ATGCAT	1 cut(s)	1547
MroXI	GAANNNNTTC	3 cut(s)	155, 552, 1251
MscI	TGGCCA	1 cut(s)	2031
MseI	TTAA	2 cut(s)	1739, 1827
Msp20I	TGGCCA	1 cut(s)	2031
MspA1I	CMGCKG	1 cut(s)	227
MspCI	CTTAAG	1 cut(s)	1826
MspI	CCGG	1 cut(s)	1600
MspR9I	CCNGG	8 cut(s)	46, 773, 887, 993, 1085, 1292, 1315, 2064
Mva1269I	GAATGC	1 cut(s)	474
MvaI	CCWGG	8 cut(s)	46, 773, 887, 993, 1085, 1292, 1315, 2064
MwoI	GCNNNNNNNGC	2 cut(s)	1475, 1762
NdeII	GATC	7 cut(s)	137, 370, 712, 741, 811, 1302, 2141
NlaIV	GGNNCC	4 cut(s)	743, 770, 1312, 1507
NmuCI	GTSAC	3 cut(s)	1453, 2126, 2174
NsiI	ATGCAT	1 cut(s)	1547
NspI	RCATGY	3 cut(s)	1545, 1916, 2273
NspV	TTCGAA	1 cut(s)	1411
PaeI	GCATGC	1 cut(s)	1545
PagI	TCATGA	1 cut(s)	196
PciI	ACATGT	1 cut(s)	2269
PciSI	GCTCTTC	1 cut(s)	6
PctI	GAATGC	1 cut(s)	474
PdmI	GAANNNNTTC	3 cut(s)	155, 552, 1251
PfeI	GAWTC	7 cut(s)	641, 1205, 1267, 1342, 1655, 1994, 2024
PflMI	CCANNNNNTGG	1 cut(s)	778
PfoI	TCCNGGA	1 cut(s)	991
PkrI	GCNGC	2 cut(s)	1523, 1819
PleI	GAGTC	2 cut(s)	790, 1295
PpsI	GAGTC	2 cut(s)	790, 1295
Ppu21I	YACGTR	1 cut(s)	983
PscI	ACATGT	1 cut(s)	2269
Psp6I	CCWGG	8 cut(s)	44, 771, 885, 991, 1083, 1290, 1313, 2062
PspGI	CCWGG	8 cut(s)	44, 771, 885, 991, 1083, 1290, 1313, 2062
PspN4I	GGNNCC	4 cut(s)	743, 770, 1312, 1507
PspPI	GGNCC	5 cut(s)	418, 429, 1216, 1310, 1442
PstNI	CAGNNNCTG	2 cut(s)	778, 905
PsuI	RGATCY	4 cut(s)	370, 741, 811, 2141
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	3 cut(s)	87, 985, 1079
RsaNI	GTAC	3 cut(s)	86, 984, 1078
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	2 cut(s)	1739, 1827
SatI	GCNGC	2 cut(s)	1522, 1818
Sau3AI	GATC	7 cut(s)	137, 370, 712, 741, 811, 1302, 2141
Sau96I	GGNCC	5 cut(s)	418, 429, 1216, 1310, 1442
SchI	GAGTC	2 cut(s)	791, 1296
ScrFI	CCNGG	8 cut(s)	46, 773, 887, 993, 1085, 1292, 1315, 2064
SduI	GDGCHC	1 cut(s)	1767
SfaNI	GCATC	5 cut(s)	556, 595, 1113, 1456, 1465
SfcI	CTRYAG	2 cut(s)	234, 1449
SfuI	TTCGAA	1 cut(s)	1411
SinI	GGWCC	5 cut(s)	418, 429, 1216, 1310, 1442
SmlI	CTYRAG	2 cut(s)	1793, 1826
SmoI	CTYRAG	2 cut(s)	1793, 1826
SpeI	ACTAGT	1 cut(s)	1237
SphI	GCATGC	1 cut(s)	1545
Sse9I	AATT	7 cut(s)	218, 928, 1024, 1093, 1259, 1736, 2184
SsiI	CCGC	1 cut(s)	28
SspI	AATATT	1 cut(s)	872
SspMI	CTAG	4 cut(s)	1238, 1529, 1572, 1635
StyD4I	CCNGG	8 cut(s)	44, 771, 885, 991, 1083, 1290, 1313, 2062
StyI	CCWWGG	2 cut(s)	764, 1346
TaaI	ACNGT	5 cut(s)	701, 1019, 1609, 2055, 2153
TaiI	ACGT	2 cut(s)	985, 1377
TaqI	TCGA	4 cut(s)	1164, 1363, 1411, 1729
TasI	AATT	7 cut(s)	218, 928, 1024, 1093, 1259, 1736, 2184
TatI	WGTACW	1 cut(s)	85
TfiI	GAWTC	7 cut(s)	641, 1205, 1267, 1342, 1655, 1994, 2024
Tru1I	TTAA	2 cut(s)	1739, 1827
Tru9I	TTAA	2 cut(s)	1739, 1827
TscAI	CASTG	2 cut(s)	619, 706
TseFI	GTSAC	3 cut(s)	1453, 2126, 2174
TseI	GCWGC	2 cut(s)	1521, 1817
Tsp45I	GTSAC	3 cut(s)	1453, 2126, 2174
TspGWI	ACGGA	2 cut(s)	23, 663
TspRI	CASTG	2 cut(s)	619, 706
Van91I	CCANNNNNTGG	1 cut(s)	778
Vha464I	CTTAAG	1 cut(s)	1826
VpaK11BI	GGWCC	5 cut(s)	418, 429, 1216, 1310, 1442
XagI	CCTNNNNNAGG	1 cut(s)	436
XapI	RAATTY	2 cut(s)	1024, 1093
XceI	RCATGY	3 cut(s)	1545, 1916, 2273
XmnI	GAANNNNTTC	3 cut(s)	155, 552, 1251
XspI	CTAG	4 cut(s)	1238, 1529, 1572, 1635
Zsp2I	ATGCAT	1 cut(s)	1547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.