Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0011238

Physical Location & Seq

Genomic Coordinates Forward (+)

23271358 .. 23272196

Gene Structure 839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1143200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGTTGCGGCGACGTTAACTTCACCGTCGTCCCAACTGCTATGCTCAAGCTCCCGCTCTCTCTCTAACCTCTATCCTCTCCAACAATGTGTGTTGGGGTCCAAAACAGTCGTCTCATGCCCTAACAACTTCAGTTACAGCAAGAGGAGGCATGCGGCTGACGGAGTTAGGTGCATGGCGGTGGCGGCGGAGACGGCGGAGCCAAAGAAGAAGAGCGGATACAAGATTCAGACGCTGACGGGCTGGCTGCTGAAGCAAGAGCAGGCCGGGGTGATTGACGCCGAGCTGACCATTGTGCTGTCGAGCATTTCGTTGGCGTGCAAGCAGATTGCTTCTTTGGTGCAGAGGGCTAGCATTTCCAACTTGACTGGGATTCAGGGTGCGGTTAATATCCAAGGAGAGGACCAAAAGAAACTTGATGTTGTCTCCAATGAGTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006091 GO:0006094 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009311 GO:0009312 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009773 GO:0009987 GO:0010033 GO:0010319 GO:0015979 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019318 GO:0019319 GO:0019637 GO:0019684 GO:0022900 GO:0030388 GO:0031967 GO:0031975 GO:0034637 GO:0042132 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046364 GO:0048046 GO:0050308 GO:0050896 GO:0055114 GO:0071704 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

147

Amino Acids

15.61

Weight (kDa)

9.04

Isoelectric Point (pI)

51.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	78 - 145	1.7e-14	Fructose-1-6-bisphosphatase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54050 AT3G54050
fragaria_vesca	FvH4_6g12370 FvH4_6g12370
malus_domestica	MD04G1143200.v1.1 MD04G1143400.v1.1 MD12G1157400.v1.1 MD12G1157600.v1.1
prunus_persica	Prupe.6G267900_v2.0.a1
pyrus_communis	pycom04g13010 pycom12g14970
rosa_chinensis	RchiOBHm_Chr3g0464191
rosa_laevigata	RLG00000024716
rosa_multiflora	Rmu_sc0006492.1_g000023
rosa_roxburghii	Rroxscaffold_6G00415940
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh3BG132500 Rh3CG134700 Rh3DG133700
rosa_wichuraiana	Rw3G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	57, 216
AciI	CCGC	9 cut(s)	8, 55, 155, 179, 185, 188, 197, 216, 383
AcuI	CTGAAG	2 cut(s)	115, 272
AcyI	GRCGYC	1 cut(s)	279
AfiI	CCNNNNNNNGG	1 cut(s)	400
AluBI	AGCT	2 cut(s)	51, 286
AluI	AGCT	2 cut(s)	51, 286
Alw26I	GTCTC	3 cut(s)	118, 185, 430
AlwNI	CAGNNNCTG	1 cut(s)	235
AoxI	GGCC	1 cut(s)	264
ApeKI	GCWGC	1 cut(s)	247
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
AspS9I	GGNCC	2 cut(s)	99, 403
AsuC2I	CCSGG	1 cut(s)	268
AsuHPI	GGTGA	2 cut(s)	15, 283
AsuNHI	GCTAGC	1 cut(s)	350
AvaII	GGWCC	2 cut(s)	99, 403
BarI	GAAGNNNNNNTAC	2 cut(s)	203, 235
BbvI	GCAGC	1 cut(s)	234
BceAI	ACGGC	1 cut(s)	210
BciVI	GTATCC	1 cut(s)	212
BcnI	CCSGG	1 cut(s)	268
BcoDI	GTCTC	3 cut(s)	118, 185, 430
BfaI	CTAG	1 cut(s)	351
BfuI	GTATCC	1 cut(s)	212
BisI	GCNGC	4 cut(s)	9, 156, 186, 248
BlsI	GCNGC	4 cut(s)	10, 157, 187, 249
Bme1390I	CCNGG	1 cut(s)	268
Bme18I	GGWCC	2 cut(s)	99, 403
BmgT120I	GGNCC	2 cut(s)	99, 403
BmiI	GGNNCC	2 cut(s)	100, 201
BmrFI	CCNGG	1 cut(s)	268
BmrI	ACTGGG	1 cut(s)	378
BmtI	GCTAGC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	378
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	1 cut(s)	268
BsaHI	GRCGYC	1 cut(s)	279
BsaJI	CCNNGG	2 cut(s)	267, 394
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse1I	ACTGG	1 cut(s)	373
BseDI	CCNNGG	2 cut(s)	267, 394
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseNI	ACTGG	1 cut(s)	373
BseRI	GAGGAG	1 cut(s)	160
BseXI	GCAGC	1 cut(s)	234
BsgI	GTGCAG	1 cut(s)	362
BshFI	GGCC	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmAI	GTCTC	3 cut(s)	118, 185, 430
BsmBI	CGTCTC	2 cut(s)	118, 185
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	1 cut(s)	266
BspACI	CCGC	9 cut(s)	8, 55, 155, 179, 185, 188, 197, 216, 383
BspANI	GGCC	1 cut(s)	266
BspLI	GGNNCC	2 cut(s)	100, 201
BspOI	GCTAGC	1 cut(s)	354
BspQI	GCTCTTC	1 cut(s)	206
BsrBI	CCGCTC	2 cut(s)	57, 216
BsrI	ACTGG	1 cut(s)	373
BssECI	CCNNGG	2 cut(s)	267, 394
BssNI	GRCGYC	1 cut(s)	279
BssT1I	CCWWGG	1 cut(s)	394
Bst4CI	ACNGT	2 cut(s)	27, 109
Bst6I	CTCTTC	1 cut(s)	206
BstACI	GRCGYC	1 cut(s)	279
BstC8I	GCNNGC	6 cut(s)	153, 245, 264, 319, 323, 352
BstMAI	GTCTC	3 cut(s)	118, 185, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 194, 253
BstNSI	RCATGY	1 cut(s)	155
BstSCI	CCNGG	1 cut(s)	266
BstV1I	GCAGC	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	212
BsuRI	GGCC	1 cut(s)	266
Cac8I	GCNNGC	6 cut(s)	153, 245, 264, 319, 323, 352
CaiI	CAGNNNCTG	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	99, 403
CseI	GACGC	2 cut(s)	241, 287
CviAII	CATG	3 cut(s)	117, 152, 175
CviJI	RGCY	8 cut(s)	51, 158, 202, 243, 247, 266, 286, 350
CviKI_1	RGCY	8 cut(s)	51, 158, 202, 243, 247, 266, 286, 350
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
EciI	GGCGGA	2 cut(s)	203, 212
Eco130I	CCWWGG	1 cut(s)	394
Eco47I	GGWCC	2 cut(s)	99, 403
Eco57I	CTGAAG	2 cut(s)	115, 272
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
Esp3I	CGTCTC	2 cut(s)	118, 185
FaeI	CATG	3 cut(s)	120, 155, 178
FaiI	YATR	4 cut(s)	43, 118, 153, 176
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	3 cut(s)	116, 151, 174
FauI	CCCGC	1 cut(s)	62
Fnu4HI	GCNGC	4 cut(s)	9, 156, 186, 248
Fsp4HI	GCNGC	4 cut(s)	9, 156, 186, 248
FspBI	CTAG	1 cut(s)	351
GluI	GCNGC	4 cut(s)	9, 156, 186, 248
HaeIII	GGCC	1 cut(s)	266
HapII	CCGG	1 cut(s)	267
HgaI	GACGC	2 cut(s)	241, 287
Hin1I	GRCGYC	1 cut(s)	279
Hin1II	CATG	3 cut(s)	120, 155, 178
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	226, 373
HpaI	GTTAAC	1 cut(s)	18
HpaII	CCGG	1 cut(s)	267
HphI	GGTGA	2 cut(s)	15, 283
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	1 cut(s)	231
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	2 cut(s)	16, 31
HpyCH4III	ACNGT	2 cut(s)	27, 109
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	3 cut(s)	174, 321, 343
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 194, 253
HpySE526I	ACGT	1 cut(s)	14
Hsp92I	GRCGYC	1 cut(s)	279
Hsp92II	CATG	3 cut(s)	120, 155, 178
KspAI	GTTAAC	1 cut(s)	18
LguI	GCTCTTC	1 cut(s)	206
LmnI	GCTCC	2 cut(s)	56, 199
LpnPI	CCDG	5 cut(s)	229, 248, 280, 354, 362
Lsp1109I	GCAGC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	351
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	134
MbiI	CCGCTC	2 cut(s)	57, 216
MboII	GAAGA	2 cut(s)	220, 223
MmeI	TCCRAC	2 cut(s)	106, 384
MnlI	CCTC	6 cut(s)	80, 87, 138, 141, 339, 394
MseI	TTAA	2 cut(s)	17, 387
MslI	CAYNNNNRTG	1 cut(s)	179
MspI	CCGG	1 cut(s)	267
MspR9I	CCNGG	1 cut(s)	268
MwoI	GCNNNNNNNGC	3 cut(s)	185, 194, 253
NciI	CCSGG	1 cut(s)	268
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	3 cut(s)	120, 155, 178
NlaIV	GGNNCC	2 cut(s)	100, 201
NmeAIII	GCCGAG	1 cut(s)	307
NspI	RCATGY	1 cut(s)	155
PaeI	GCATGC	1 cut(s)	155
PciSI	GCTCTTC	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PfeI	GAWTC	2 cut(s)	226, 373
PkrI	GCNGC	4 cut(s)	10, 157, 187, 249
PspN4I	GGNNCC	2 cut(s)	100, 201
PspPI	GGNCC	2 cut(s)	99, 403
PstNI	CAGNNNCTG	1 cut(s)	235
RseI	CAYNNNNRTG	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	206
SaqAI	TTAA	2 cut(s)	17, 387
SatI	GCNGC	4 cut(s)	9, 156, 186, 248
Sau96I	GGNCC	2 cut(s)	99, 403
ScrFI	CCNGG	1 cut(s)	268
SetI	ASST	5 cut(s)	17, 53, 72, 173, 288
SinI	GGWCC	2 cut(s)	99, 403
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
SphI	GCATGC	1 cut(s)	155
SsiI	CCGC	9 cut(s)	8, 55, 155, 179, 185, 188, 197, 216, 383
SspMI	CTAG	1 cut(s)	351
StyD4I	CCNGG	1 cut(s)	266
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	27, 109
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	302
TauI	GCSGC	3 cut(s)	11, 158, 188
TfiI	GAWTC	2 cut(s)	226, 373
Tru1I	TTAA	2 cut(s)	17, 387
Tru9I	TTAA	2 cut(s)	17, 387
TseI	GCWGC	1 cut(s)	247
TspGWI	ACGGA	1 cut(s)	177
VpaK11BI	GGWCC	2 cut(s)	99, 403
XceI	RCATGY	1 cut(s)	155
XspI	CTAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.