Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0011238

Physical Location & Seq

Genomic Coordinates Forward (+)

23805113 .. 23805840

Gene Structure 728 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1157400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGTTGCAGCAACGTTAACTTCACCGTCGTCCCAACTCCTATGCTCAAGCTCCCGGTCTCTCTGTAACACCTCTTCTCTCCAACAATGTGTGTTGGGGTCCAAAACAGTCGTCTCGTGCCCTAACTTAACTTACAACAAGAGGAGGCATGCGGCTGACGGGGTTAGGTGCATGGCCGTAGCGGCGGAGACAACAGAGCCGAAGAAAAAGAGCGGGTACGAGATTCAGACGCTGACGAGCTGGCTGCTGATGCAAGAGCAGGCCGGGGTGATCGATGCCGAGCTGACCATCGTGCTCTCTAGCATTTCGGTGGCGTGCAAGCAGATTGCTTCTTTGGTGCAGAGGGCTAGCATTTCCAACTTGACTGGGATTCAGGGTGCGGTTAATATCCAAGGAGAGGACCAGAAGAAACTTGATGTTGTCTCCAACGAGGCAGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006091 GO:0006094 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009311 GO:0009312 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009773 GO:0009987 GO:0010033 GO:0010319 GO:0015979 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019318 GO:0019319 GO:0019637 GO:0019684 GO:0022900 GO:0030388 GO:0031967 GO:0031975 GO:0034637 GO:0042132 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046364 GO:0048046 GO:0050308 GO:0050896 GO:0055114 GO:0071704 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

148

Amino Acids

15.65

Weight (kDa)

7.56

Isoelectric Point (pI)

54.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	77 - 144	2.2e-14	Fructose-1-6-bisphosphatase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0011238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54050 AT3G54050
fragaria_vesca	FvH4_6g12370 FvH4_6g12370
malus_domestica	MD04G1143200.v1.1 MD04G1143400.v1.1 MD12G1157400.v1.1 MD12G1157600.v1.1
prunus_persica	Prupe.6G267900_v2.0.a1
pyrus_communis	pycom04g13010 pycom12g14970
rosa_chinensis	RchiOBHm_Chr3g0464191
rosa_laevigata	RLG00000024716
rosa_multiflora	Rmu_sc0006492.1_g000023
rosa_roxburghii	Rroxscaffold_6G00415940
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh3BG132500 Rh3CG134700 Rh3DG133700
rosa_wichuraiana	Rw3G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	213
AciI	CCGC	5 cut(s)	152, 182, 185, 213, 380
AclI	AACGTT	1 cut(s)	14
AcoI	YGGCCR	1 cut(s)	174
AfaI	GTAC	1 cut(s)	218
AfiI	CCNNNNNNNGG	1 cut(s)	397
AluBI	AGCT	3 cut(s)	51, 240, 283
AluI	AGCT	3 cut(s)	51, 240, 283
Alw21I	GWGCWC	1 cut(s)	297
Alw26I	GTCTC	4 cut(s)	63, 118, 182, 427
AlwNI	CAGNNNCTG	1 cut(s)	232
AoxI	GGCC	2 cut(s)	174, 261
ApeKI	GCWGC	2 cut(s)	8, 244
ArsI	GACNNNNNNTTYG	2 cut(s)	96, 128
AspS9I	GGNCC	2 cut(s)	99, 400
AsuC2I	CCSGG	2 cut(s)	55, 265
AsuHPI	GGTGA	2 cut(s)	15, 280
AsuNHI	GCTAGC	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	99, 400
BaeGI	GKGCMC	1 cut(s)	122
BarI	GAAGNNNNNNTAC	2 cut(s)	58, 90
BauI	CACGAG	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	297
BbvI	GCAGC	2 cut(s)	20, 231
BccI	CCATC	1 cut(s)	296
BceAI	ACGGC	1 cut(s)	161
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BcnI	CCSGG	2 cut(s)	55, 265
BcoDI	GTCTC	4 cut(s)	63, 118, 182, 427
BfaI	CTAG	2 cut(s)	300, 348
BglI	GCCNNNNNGGC	1 cut(s)	182
BisI	GCNGC	4 cut(s)	9, 153, 183, 245
BlsI	GCNGC	4 cut(s)	10, 154, 184, 246
Bme1390I	CCNGG	2 cut(s)	55, 265
Bme18I	GGWCC	2 cut(s)	99, 400
BmgT120I	GGNCC	2 cut(s)	99, 400
BmiI	GGNNCC	1 cut(s)	100
BmrFI	CCNGG	2 cut(s)	55, 265
BmrI	ACTGGG	1 cut(s)	375
BmsI	GCATC	2 cut(s)	240, 265
BmtI	GCTAGC	1 cut(s)	351
BmuI	ACTGGG	1 cut(s)	375
BpuEI	CTTGAG	1 cut(s)	31
BpuMI	CCSGG	2 cut(s)	55, 265
Bsa29I	ATCGAT	1 cut(s)	273
BsaI	GGTCTC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	264, 391
Bsc4I	CCNNNNNNNGG	1 cut(s)	397
Bse1I	ACTGG	1 cut(s)	370
BseCI	ATCGAT	1 cut(s)	273
BseDI	CCNNGG	2 cut(s)	264, 391
BseLI	CCNNNNNNNGG	1 cut(s)	397
BseNI	ACTGG	1 cut(s)	370
BseRI	GAGGAG	1 cut(s)	157
BseSI	GKGCMC	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	20, 231
BsgI	GTGCAG	1 cut(s)	359
BshFI	GGCC	2 cut(s)	176, 263
BshVI	ATCGAT	1 cut(s)	273
BsiHKAI	GWGCWC	1 cut(s)	297
BsiSI	CCGG	2 cut(s)	55, 264
BslFI	GGGAC	1 cut(s)	16
BslI	CCNNNNNNNGG	1 cut(s)	397
BsmAI	GTCTC	4 cut(s)	63, 118, 182, 427
BsmBI	CGTCTC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	16
BsnI	GGCC	2 cut(s)	176, 263
Bso31I	GGTCTC	1 cut(s)	63
Bsp1286I	GDGCHC	2 cut(s)	122, 297
Bsp143I	GATC	1 cut(s)	270
BspACI	CCGC	5 cut(s)	152, 182, 185, 213, 380
BspANI	GGCC	2 cut(s)	176, 263
BspDI	ATCGAT	1 cut(s)	273
BspLI	GGNNCC	1 cut(s)	100
BspOI	GCTAGC	1 cut(s)	351
BspTNI	GGTCTC	1 cut(s)	63
BsrBI	CCGCTC	1 cut(s)	213
BsrI	ACTGG	1 cut(s)	370
BssECI	CCNNGG	2 cut(s)	264, 391
BssMI	GATC	1 cut(s)	270
BssSI	CACGAG	1 cut(s)	115
BssT1I	CCWWGG	1 cut(s)	391
Bst2BI	CACGAG	1 cut(s)	115
Bst4CI	ACNGT	2 cut(s)	27, 109
Bst6I	CTCTTC	1 cut(s)	79
BstC8I	GCNNGC	6 cut(s)	150, 242, 261, 316, 320, 349
BstKTI	GATC	1 cut(s)	273
BstMAI	GTCTC	4 cut(s)	63, 118, 182, 427
BstMBI	GATC	1 cut(s)	270
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 250
BstNSI	RCATGY	1 cut(s)	152
BstSCI	CCNGG	2 cut(s)	53, 263
BstSLI	GKGCMC	1 cut(s)	122
BstV1I	GCAGC	2 cut(s)	20, 231
Bsu15I	ATCGAT	1 cut(s)	273
BsuRI	GGCC	2 cut(s)	176, 263
BsuTUI	ATCGAT	1 cut(s)	273
Cac8I	GCNNGC	6 cut(s)	150, 242, 261, 316, 320, 349
CaiI	CAGNNNCTG	1 cut(s)	232
Cfr13I	GGNCC	2 cut(s)	99, 400
ClaI	ATCGAT	1 cut(s)	273
CseI	GACGC	1 cut(s)	238
Csp6I	GTAC	1 cut(s)	217
CviAII	CATG	2 cut(s)	149, 172
CviJI	RGCY	9 cut(s)	51, 155, 176, 199, 240, 244, 263, 283, 347
CviKI_1	RGCY	9 cut(s)	51, 155, 176, 199, 240, 244, 263, 283, 347
CviQI	GTAC	1 cut(s)	217
DpnI	GATC	1 cut(s)	272
DpnII	GATC	1 cut(s)	270
EaeI	YGGCCR	1 cut(s)	174
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	200
Eco130I	CCWWGG	1 cut(s)	391
Eco31I	GGTCTC	1 cut(s)	63
Eco47I	GGWCC	2 cut(s)	99, 400
EcoT14I	CCWWGG	1 cut(s)	391
ErhI	CCWWGG	1 cut(s)	391
Esp3I	CGTCTC	1 cut(s)	118
FaeI	CATG	2 cut(s)	152, 175
FaiI	YATR	3 cut(s)	43, 150, 173
FaqI	GGGAC	1 cut(s)	16
FatI	CATG	2 cut(s)	148, 171
FauI	CCCGC	1 cut(s)	206
Fnu4HI	GCNGC	4 cut(s)	9, 153, 183, 245
Fsp4HI	GCNGC	4 cut(s)	9, 153, 183, 245
FspBI	CTAG	2 cut(s)	300, 348
GluI	GCNGC	4 cut(s)	9, 153, 183, 245
HaeIII	GGCC	2 cut(s)	176, 263
HapII	CCGG	2 cut(s)	55, 264
HgaI	GACGC	1 cut(s)	238
Hin1II	CATG	2 cut(s)	152, 175
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	2 cut(s)	223, 370
HpaI	GTTAAC	1 cut(s)	18
HpaII	CCGG	2 cut(s)	55, 264
HphI	GGTGA	2 cut(s)	15, 280
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188I	TCNGA	1 cut(s)	228
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	27, 109
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	5 cut(s)	8, 171, 253, 318, 340
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 250
HpySE526I	ACGT	1 cut(s)	14
Hsp92II	CATG	2 cut(s)	152, 175
KspAI	GTTAAC	1 cut(s)	18
Kzo9I	GATC	1 cut(s)	270
LmnI	GCTCC	1 cut(s)	56
LpnPI	CCDG	7 cut(s)	68, 226, 245, 277, 351, 359, 416
Lsp1109I	GCAGC	2 cut(s)	20, 231
LweI	GCATC	2 cut(s)	240, 265
MaeI	CTAG	2 cut(s)	300, 348
MaeII	ACGT	1 cut(s)	14
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	1 cut(s)	272
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	1 cut(s)	270
MboII	GAAGA	3 cut(s)	66, 214, 418
MhlI	GDGCHC	2 cut(s)	122, 297
MmeI	TCCRAC	2 cut(s)	106, 381
MnlI	CCTC	6 cut(s)	82, 135, 138, 336, 391, 424
MseI	TTAA	3 cut(s)	17, 128, 384
MslI	CAYNNNNRTG	1 cut(s)	308
MspI	CCGG	2 cut(s)	55, 264
MspR9I	CCNGG	2 cut(s)	55, 265
MwoI	GCNNNNNNNGC	2 cut(s)	182, 250
NciI	CCSGG	2 cut(s)	55, 265
NdeII	GATC	1 cut(s)	270
NheI	GCTAGC	1 cut(s)	347
NlaIII	CATG	2 cut(s)	152, 175
NlaIV	GGNNCC	1 cut(s)	100
NmeAIII	GCCGAG	1 cut(s)	304
NspI	RCATGY	1 cut(s)	152
PaeI	GCATGC	1 cut(s)	152
PfeI	GAWTC	2 cut(s)	223, 370
PkrI	GCNGC	4 cut(s)	10, 154, 184, 246
Psp1406I	AACGTT	1 cut(s)	14
PspN4I	GGNNCC	1 cut(s)	100
PspPI	GGNCC	2 cut(s)	99, 400
PstNI	CAGNNNCTG	1 cut(s)	232
RsaI	GTAC	1 cut(s)	218
RsaNI	GTAC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	308
SaqAI	TTAA	3 cut(s)	17, 128, 384
SatI	GCNGC	4 cut(s)	9, 153, 183, 245
Sau3AI	GATC	1 cut(s)	270
Sau96I	GGNCC	2 cut(s)	99, 400
ScrFI	CCNGG	2 cut(s)	55, 265
SduI	GDGCHC	2 cut(s)	122, 297
SetI	ASST	6 cut(s)	17, 53, 74, 170, 242, 285
SfaNI	GCATC	2 cut(s)	240, 265
SinI	GGWCC	2 cut(s)	99, 400
SmiMI	CAYNNNNRTG	1 cut(s)	308
SmlI	CTYRAG	1 cut(s)	46
SmoI	CTYRAG	1 cut(s)	46
SphI	GCATGC	1 cut(s)	152
SsiI	CCGC	5 cut(s)	152, 182, 185, 213, 380
SspMI	CTAG	2 cut(s)	300, 348
StyD4I	CCNGG	2 cut(s)	53, 263
StyI	CCWWGG	1 cut(s)	391
TaaI	ACNGT	2 cut(s)	27, 109
TaiI	ACGT	1 cut(s)	17
TaqI	TCGA	1 cut(s)	273
TauI	GCSGC	2 cut(s)	155, 185
TfiI	GAWTC	2 cut(s)	223, 370
Tru1I	TTAA	3 cut(s)	17, 128, 384
Tru9I	TTAA	3 cut(s)	17, 128, 384
TseI	GCWGC	2 cut(s)	8, 244
VpaK11BI	GGWCC	2 cut(s)	99, 400
XceI	RCATGY	1 cut(s)	152
XspI	CTAG	2 cut(s)	300, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.