Rw3G010840

Belongs to the FBPase class 1 family

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
10440553 .. 10442653
2101 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G010840.1

Sequence Viewer

Length: 1200 bp
ATGGTTGCAGCAGCAGTAACTCCATCTTCGTCCCAACTCTTATGCTCGAGCTCTCGCTCCATTTCTCAGCTCTCTCCCTCTGCAGCAATGCGTCTTCGCAGCAAGAGAAATAGGGGTACCGGCAGCGTTGGAGTTAAATGCATGGCGGTGGCAGCTGAAACTGAGCCGAAAAAGAAAAGCGGGTACCAGATTACAACCCTGACGTGCTGGTTGCTGGAGCAAGAACAGAAGGGTGTCATTGATGCAGAGATGACCATTGTGCTTTCGAGCATTTCGTTGGCCTGCAAGCAGATTGCTTCTTTGGTGCAGAGAGCTAGCATTTCTAACTTGACTGGTATTCAGGGTGCTGTGAACATTCAAGGAGAGGACCAGAAGAAACTCGACGTCGTCTCCAATGAGGTTTTCTCCAACTGCTTGAGATCGAGTGGACGAACAGGGATTATAGCCTCTGAGGAAGAGGATGTGCCAGTGGCTGTGGAAGAGAGTTATTCCGGCAACTACATTGTGGTGTTTGACCCTCTTGATGGATCATCCAACATTGACGCTGCAGTTTCCACTGGTTCAATCTTCGGAATATACAGCCCAACTGACGAGTGCCTAGCAGACATTGATGATGAAAATCTTGACAGTGCTGCACAGAAATGTATAGTGAATGTGTGTCAGCCAGGAAGCAACCTACTTGCTGCTGGCTACTGCATGTACTCAAGCTCTGTAATCTTTGTGCTTACAGTTGGGCAAGGTGTATATGCATTTAGCTTGGACCCCATGTATGGTGAATTTGTTTTGACCCAAGAAAAAGTTCAGATACCGAAAGCAGGAAAGATTTACTCGTTCAATGAAGGCAACTATCAACTGTGGGATGACAAGTTGAAGAAGTACATGGATGACCTTAAGGACCCAGGTCCGAGTGGCAAGCCCTACTCTGCAAGGTACATTGGTAGTTTGGTTGGGGACTTTCATAGAACGCTTCTGTACGGTGGCATTTATGGGTACCCAAGAGACAAGAAGAGCAAGAATGGAAAGCTGAGGCTATTGTATGAGTGCGCACCAATGAGTTTCATAGTGGAACAAGCTGGCGGGAAAGGATCTGACGGCCATGCCAGAGTACTAGACATTCAGCCAACTGAGATTCATCAGCGCGTTCCACTTTACATTGGAAGTGTAGACGAGGTGGAGAAGTTGGAGAAGTATTTAGCTTGA

Protein Analysis

399

Amino Acids

43.18

Weight (kDa)

5.25

Isoelectric Point (pI)

40.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBPase PF00316 66 - 265 1.1e-56 Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C PF18913 269 - 398 2.7e-49 Fructose-1-6-bisphosphatase, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011238)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 387
Acc16I TGCGCA 1 cut(s) 1045
Acc65I GGTACC 3 cut(s) 116, 183, 990
AccB1I GGYRCC 3 cut(s) 116, 183, 990
AccI GTMKAC 1 cut(s) 1164
AccII CGCG 1 cut(s) 1140
AciI CCGC 3 cut(s) 146, 180, 1077
AclWI GGATC 2 cut(s) 535, 1093
AcoI YGGCCR 1 cut(s) 1093
AcsI RAATTY 1 cut(s) 776
AcyI GRCGYC 1 cut(s) 384
AfaI GTAC 8 cut(s) 118, 185, 701, 878, 932, 974, 992, 1107
AfiI CCNNNNNNNGG 3 cut(s) 524, 770, 815
AflII CTTAAG 1 cut(s) 890
AgsI TTSAA 4 cut(s) 359, 564, 835, 871
AjiI CACGTC 1 cut(s) 204
AjnI CCWGG 2 cut(s) 664, 898
AjuI GAANNNNNNNTTGG 4 cut(s) 386, 418, 783, 815
AluBI AGCT 9 cut(s) 51, 70, 155, 314, 708, 756, 1024, 1073, 1196
AluI AGCT 9 cut(s) 51, 70, 155, 314, 708, 756, 1024, 1073, 1196
Alw21I GWGCWC 1 cut(s) 53
Alw26I GTCTC 2 cut(s) 394, 993
AlwI GGATC 2 cut(s) 535, 1093
AlwNI CAGNNNCTG 1 cut(s) 473
Ama87I CYCGRG 1 cut(s) 46
AoxI GGCC 2 cut(s) 279, 1093
ApeKI GCWGC 9 cut(s) 8, 11, 83, 99, 123, 152, 545, 632, 683
ApoI RAATTY 1 cut(s) 776
Asp700I GAANNNNTTC 1 cut(s) 798
Asp718I GGTACC 3 cut(s) 116, 183, 990
AspLEI GCGC 2 cut(s) 1046, 1140
AspS9I GGNCC 4 cut(s) 367, 760, 895, 902
AsuHPI GGTGA 1 cut(s) 785
AsuNHI GCTAGC 1 cut(s) 314
AvaI CYCGRG 1 cut(s) 46
AvaII GGWCC 4 cut(s) 367, 760, 895, 902
BaeI ACNNNNGTAYC 2 cut(s) 922, 955
BanI GGYRCC 3 cut(s) 116, 183, 990
BanII GRGCYC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 86
Bbv12I GWGCWC 1 cut(s) 53
BbvCI CCTCAGC 1 cut(s) 1025
BbvI GCAGC 9 cut(s) 20, 23, 95, 111, 135, 164, 532, 619, 670
BccI CCATC 2 cut(s) 31, 518
BceAI ACGGC 1 cut(s) 1108
BciT130I CCWGG 2 cut(s) 666, 900
BcoDI GTCTC 2 cut(s) 394, 993
BfaI CTAG 3 cut(s) 315, 599, 1109
BfmI CTRYAG 2 cut(s) 81, 546
BfrI CTTAAG 1 cut(s) 890
BisI GCNGC 9 cut(s) 9, 12, 84, 100, 124, 153, 546, 633, 684
BlsI GCNGC 9 cut(s) 10, 13, 85, 101, 125, 154, 547, 634, 685
BmcAI AGTACT 1 cut(s) 1107
Bme1390I CCNGG 2 cut(s) 666, 900
Bme18I GGWCC 4 cut(s) 367, 760, 895, 902
BmeT110I CYCGRG 1 cut(s) 46
BmgBI CACGTC 1 cut(s) 204
BmgT120I GGNCC 4 cut(s) 367, 760, 895, 902
BmiI GGNNCC 5 cut(s) 118, 185, 762, 897, 992
BmrFI CCNGG 2 cut(s) 666, 900
BmsI GCATC 1 cut(s) 232
BmtI GCTAGC 1 cut(s) 318
BoxI GACNNNNGTC 1 cut(s) 900
BpiI GAAGAC 1 cut(s) 86
BplI GAGNNNNNCTC 2 cut(s) 389, 421
BpmI CTGGAG 1 cut(s) 236
Bpu10I CCTNAGC 1 cut(s) 1025
BpuEI CTTGAG 2 cut(s) 436, 688
BsaBI GATNNNNATC 1 cut(s) 618
BsaHI GRCGYC 1 cut(s) 384
BsaJI CCNNGG 1 cut(s) 898
BsaXI ACNNNNNCTCC 2 cut(s) 374, 404
Bsc4I CCNNNNNNNGG 3 cut(s) 524, 770, 815
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 3 cut(s) 337, 467, 562
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 618
BseBI CCWGG 2 cut(s) 666, 900
BseDI CCNNGG 1 cut(s) 898
BseGI GGATG 4 cut(s) 466, 530, 865, 889
BseJI GATNNNNATC 1 cut(s) 618
BseLI CCNNNNNNNGG 3 cut(s) 524, 770, 815
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 5 cut(s) 80, 153, 441, 1016, 1116
BseNI ACTGG 3 cut(s) 337, 467, 562
BseXI GCAGC 9 cut(s) 20, 23, 95, 111, 135, 164, 532, 619, 670
BsgI GTGCAG 2 cut(s) 326, 618
Bsh1236I CGCG 1 cut(s) 1140
BshFI GGCC 2 cut(s) 281, 1095
BshNI GGYRCC 3 cut(s) 116, 183, 990
BsiHKAI GWGCWC 1 cut(s) 53
BsiHKCI CYCGRG 1 cut(s) 46
BsiSI CCGG 2 cut(s) 120, 492
BslFI GGGAC 2 cut(s) 16, 965
BslI CCNNNNNNNGG 3 cut(s) 524, 770, 815
BsmAI GTCTC 2 cut(s) 394, 993
BsmBI CGTCTC 1 cut(s) 394
BsmFI GGGAC 2 cut(s) 16, 965
BsnI GGCC 2 cut(s) 281, 1095
BsoBI CYCGRG 1 cut(s) 46
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 3 cut(s) 419, 527, 1085
BspACI CCGC 3 cut(s) 146, 180, 1077
BspANI GGCC 2 cut(s) 281, 1095
BspCNI CTCAG 5 cut(s) 79, 154, 442, 1017, 1117
BspFNI CGCG 1 cut(s) 1140
BspLI GGNNCC 5 cut(s) 118, 185, 762, 897, 992
BspMAI CTGCAG 2 cut(s) 85, 550
BspOI GCTAGC 1 cut(s) 318
BspPI GGATC 2 cut(s) 535, 1093
BspQI GCTCTTC 1 cut(s) 1001
BspT107I GGYRCC 3 cut(s) 116, 183, 990
BspTI CTTAAG 1 cut(s) 890
BsrDI GCAATG 1 cut(s) 93
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 3 cut(s) 337, 467, 562
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 898
BssMI GATC 3 cut(s) 419, 527, 1085
BssNI GRCGYC 1 cut(s) 384
Bst2UI CCWGG 2 cut(s) 666, 900
Bst4CI ACNGT 4 cut(s) 629, 730, 855, 977
Bst6I CTCTTC 3 cut(s) 450, 474, 1001
BstACI GRCGYC 1 cut(s) 384
BstAFI CTTAAG 1 cut(s) 890
BstC8I GCNNGC 6 cut(s) 283, 287, 316, 688, 914, 1075
BstDEI CTNAG 5 cut(s) 66, 162, 450, 1025, 1125
BstF5I GGATG 4 cut(s) 466, 530, 865, 889
BstFNI CGCG 1 cut(s) 1140
BstHHI GCGC 2 cut(s) 1046, 1140
BstKTI GATC 3 cut(s) 422, 530, 1088
BstMAI GTCTC 2 cut(s) 394, 993
BstMBI GATC 3 cut(s) 419, 527, 1085
BstMWI GCNNNNNNNGC 1 cut(s) 152
BstNI CCWGG 2 cut(s) 666, 900
BstNSI RCATGY 1 cut(s) 700
BstPAI GACNNNNGTC 1 cut(s) 900
BstSCI CCNGG 2 cut(s) 664, 898
BstSFI CTRYAG 2 cut(s) 81, 546
BstUI CGCG 1 cut(s) 1140
BstV1I GCAGC 9 cut(s) 20, 23, 95, 111, 135, 164, 532, 619, 670
BstV2I GAAGAC 1 cut(s) 86
BstX2I RGATCY 1 cut(s) 1085
BstYI RGATCY 1 cut(s) 1085
BsuRI GGCC 2 cut(s) 281, 1095
BtrI CACGTC 1 cut(s) 204
BtsCI GGATG 4 cut(s) 466, 530, 865, 889
BtsIMutI CAGTG 3 cut(s) 474, 555, 634
Cac8I GCNNGC 6 cut(s) 283, 287, 316, 688, 914, 1075
CaiI CAGNNNCTG 1 cut(s) 473
CfoI GCGC 2 cut(s) 1046, 1140
Cfr10I RCCGGY 1 cut(s) 119
Cfr13I GGNCC 4 cut(s) 367, 760, 895, 902
CseI GACGC 2 cut(s) 80, 551
Csp6I GTAC 8 cut(s) 117, 184, 700, 877, 931, 973, 991, 1106
CviAII CATG 5 cut(s) 142, 697, 766, 880, 1097
CviQI GTAC 8 cut(s) 117, 184, 700, 877, 931, 973, 991, 1106
DdeI CTNAG 5 cut(s) 66, 162, 450, 1025, 1125
DpnI GATC 3 cut(s) 421, 529, 1087
DpnII GATC 3 cut(s) 419, 527, 1085
EaeI YGGCCR 1 cut(s) 1093
Eam1104I CTCTTC 3 cut(s) 450, 474, 1001
EarI CTCTTC 3 cut(s) 450, 474, 1001
Ecl136II GAGCTC 1 cut(s) 51
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 4 cut(s) 367, 760, 895, 902
Eco53kI GAGCTC 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 46
EcoICRI GAGCTC 1 cut(s) 51
EcoO109I RGGNCCY 1 cut(s) 895
EcoRII CCWGG 2 cut(s) 664, 898
EcoT22I ATGCAT 2 cut(s) 143, 751
EcoT38I GRGCYC 1 cut(s) 53
Esp3I CGTCTC 1 cut(s) 394
FaeI CATG 5 cut(s) 145, 700, 769, 883, 1100
FaqI GGGAC 2 cut(s) 16, 965
FatI CATG 5 cut(s) 141, 696, 765, 879, 1096
FauI CCCGC 2 cut(s) 173, 1070
FblI GTMKAC 1 cut(s) 1164
Fnu4HI GCNGC 9 cut(s) 9, 12, 84, 100, 124, 153, 546, 633, 684
FokI GGATG 4 cut(s) 473, 517, 872, 896
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 9 cut(s) 9, 12, 84, 100, 124, 153, 546, 633, 684
FspAI RTGCGCAY 1 cut(s) 1045
FspBI CTAG 3 cut(s) 315, 599, 1109
FspI TGCGCA 1 cut(s) 1045
GlaI GCGC 2 cut(s) 1045, 1139
GluI GCNGC 9 cut(s) 9, 12, 84, 100, 124, 153, 546, 633, 684
GsuI CTGGAG 1 cut(s) 236
HaeIII GGCC 2 cut(s) 281, 1095
HapII CCGG 2 cut(s) 120, 492
HgaI GACGC 2 cut(s) 80, 551
HhaI GCGC 2 cut(s) 1046, 1140
Hin1I GRCGYC 1 cut(s) 384
Hin1II CATG 5 cut(s) 145, 700, 769, 883, 1100
Hin6I GCGC 2 cut(s) 1044, 1138
HinP1I GCGC 2 cut(s) 1044, 1138
HinfI GANTC 1 cut(s) 1129
HpaII CCGG 2 cut(s) 120, 492
HphI GGTGA 1 cut(s) 785
Hpy166II GTNNAC 3 cut(s) 352, 428, 1165
Hpy188I TCNGA 5 cut(s) 451, 572, 804, 906, 1090
Hpy188III TCNNGA 2 cut(s) 521, 623
Hpy8I GTNNAC 3 cut(s) 352, 428, 1165
Hpy99I CGWCG 2 cut(s) 386, 389
HpyAV CCTTC 2 cut(s) 223, 833
HpyCH4III ACNGT 4 cut(s) 629, 730, 855, 977
HpyCH4IV ACGT 2 cut(s) 203, 384
HpyF10VI GCNNNNNNNGC 1 cut(s) 152
HpyF3I CTNAG 5 cut(s) 66, 162, 450, 1025, 1125
HpySE526I ACGT 2 cut(s) 203, 384
Hsp92I GRCGYC 1 cut(s) 384
Hsp92II CATG 5 cut(s) 145, 700, 769, 883, 1100
HspAI GCGC 2 cut(s) 1044, 1138
KpnI GGTACC 3 cut(s) 120, 187, 994
Kzo9I GATC 3 cut(s) 419, 527, 1085
LguI GCTCTTC 1 cut(s) 1001
LmnI GCTCC 2 cut(s) 62, 217
Lsp1109I GCAGC 9 cut(s) 20, 23, 95, 111, 135, 164, 532, 619, 670
LweI GCATC 1 cut(s) 232
MaeI CTAG 3 cut(s) 315, 599, 1109
MaeII ACGT 2 cut(s) 203, 384
MaeIII GTNAC 1 cut(s) 16
MalI GATC 3 cut(s) 421, 529, 1087
MboI GATC 3 cut(s) 419, 527, 1085
MboII GAAGA 8 cut(s) 18, 86, 385, 467, 491, 559, 883, 1018
MflI RGATCY 1 cut(s) 1085
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 1 cut(s) 776
MmeI TCCRAC 4 cut(s) 109, 432, 558, 1161
MnlI CCTC 9 cut(s) 88, 358, 391, 445, 451, 457, 528, 1020, 1162
Mph1103I ATGCAT 2 cut(s) 143, 751
MroXI GAANNNNTTC 1 cut(s) 798
MseI TTAA 2 cut(s) 135, 891
MslI CAYNNNNRTG 3 cut(s) 146, 506, 640
MspA1I CMGCKG 1 cut(s) 155
MspCI CTTAAG 1 cut(s) 890
MspI CCGG 2 cut(s) 120, 492
MspR9I CCNGG 2 cut(s) 666, 900
MvaI CCWGG 2 cut(s) 666, 900
MvnI CGCG 1 cut(s) 1140
MwoI GCNNNNNNNGC 1 cut(s) 152
NdeII GATC 3 cut(s) 419, 527, 1085
NheI GCTAGC 1 cut(s) 314
NlaIII CATG 5 cut(s) 145, 700, 769, 883, 1100
NlaIV GGNNCC 5 cut(s) 118, 185, 762, 897, 992
NsbI TGCGCA 1 cut(s) 1045
NsiI ATGCAT 2 cut(s) 143, 751
NspI RCATGY 1 cut(s) 700
PaeR7I CTCGAG 1 cut(s) 46
PciSI GCTCTTC 1 cut(s) 1001
PcsI WCGNNNNNNNCGW 1 cut(s) 272
PdmI GAANNNNTTC 1 cut(s) 798
PfeI GAWTC 1 cut(s) 1129
PflFI GACNNNGTC 1 cut(s) 386
PkrI GCNGC 9 cut(s) 10, 13, 85, 101, 125, 154, 547, 634, 685
PpuMI RGGWCCY 1 cut(s) 895
PshAI GACNNNNGTC 1 cut(s) 900
Psp124BI GAGCTC 1 cut(s) 53
Psp5II RGGWCCY 1 cut(s) 895
Psp6I CCWGG 2 cut(s) 664, 898
PspGI CCWGG 2 cut(s) 664, 898
PspN4I GGNNCC 5 cut(s) 118, 185, 762, 897, 992
PspPI GGNCC 4 cut(s) 367, 760, 895, 902
PspPPI RGGWCCY 1 cut(s) 895
PspXI VCTCGAGB 1 cut(s) 46
PstI CTGCAG 2 cut(s) 85, 550
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 1 cut(s) 1085
PsyI GACNNNGTC 1 cut(s) 386
PvuII CAGCTG 1 cut(s) 155
RsaI GTAC 8 cut(s) 118, 185, 701, 878, 932, 974, 992, 1107
RsaNI GTAC 8 cut(s) 117, 184, 700, 877, 931, 973, 991, 1106
RseI CAYNNNNRTG 3 cut(s) 146, 506, 640
SacI GAGCTC 1 cut(s) 53
SapI GCTCTTC 1 cut(s) 1001
SaqAI TTAA 2 cut(s) 135, 891
SatI GCNGC 9 cut(s) 9, 12, 84, 100, 124, 153, 546, 633, 684
Sau3AI GATC 3 cut(s) 419, 527, 1085
Sau96I GGNCC 4 cut(s) 367, 760, 895, 902
ScaI AGTACT 1 cut(s) 1107
ScrFI CCNGG 2 cut(s) 666, 900
SduI GDGCHC 1 cut(s) 53
SfaNI GCATC 1 cut(s) 232
SfcI CTRYAG 2 cut(s) 81, 546
Sfr274I CTCGAG 1 cut(s) 46
SinI GGWCC 4 cut(s) 367, 760, 895, 902
SlaI CTCGAG 1 cut(s) 46
SmiMI CAYNNNNRTG 3 cut(s) 146, 506, 640
SmlI CTYRAG 4 cut(s) 46, 415, 703, 890
SmoI CTYRAG 4 cut(s) 46, 415, 703, 890
Sse9I AATT 1 cut(s) 776
SsiI CCGC 3 cut(s) 146, 180, 1077
SspMI CTAG 3 cut(s) 315, 599, 1109
SstI GAGCTC 1 cut(s) 53
StyD4I CCNGG 2 cut(s) 664, 898
TaaI ACNGT 4 cut(s) 629, 730, 855, 977
TaiI ACGT 2 cut(s) 206, 387
TaqI TCGA 4 cut(s) 47, 266, 381, 422
TasI AATT 1 cut(s) 776
TatI WGTACW 3 cut(s) 699, 876, 1105
TfiI GAWTC 1 cut(s) 1129
Tru1I TTAA 2 cut(s) 135, 891
Tru9I TTAA 2 cut(s) 135, 891
TscAI CASTG 3 cut(s) 474, 562, 634
TseI GCWGC 9 cut(s) 8, 11, 83, 99, 123, 152, 545, 632, 683
TspDTI ATGAA 5 cut(s) 630, 852, 947, 1048, 1121
TspRI CASTG 3 cut(s) 474, 562, 634
Tth111I GACNNNGTC 1 cut(s) 386
Vha464I CTTAAG 1 cut(s) 890
VpaK11BI GGWCC 4 cut(s) 367, 760, 895, 902
XapI RAATTY 1 cut(s) 776
XceI RCATGY 1 cut(s) 700
XhoI CTCGAG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 1164
XmnI GAANNNNTTC 1 cut(s) 798
XspI CTAG 3 cut(s) 315, 599, 1109
ZraI GACGTC 1 cut(s) 385
ZrmI AGTACT 1 cut(s) 1107
Zsp2I ATGCAT 2 cut(s) 143, 751
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.