pycom04g13010

Belongs to the FBPase class 1 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
Physical Location & Seq
Forward (+)
16053577 .. 16055533
1957 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g13010.2

Sequence Viewer

Length: 1149 bp
ATGATCACAAAAACGAACATATACAGAAGCAAGATAAGTGGGACCCAAAAGAAAACAAGAAAAATAACAGAAATTGTTGCCAACCTCACAAATCCCACACATACAATCCAAGAAACCAAAAAAAAAAAAAAAAAAGACATCAAAAAAGACATCAAAAACCGGAAAATCAAACACTCAAAAAAACAGAGCAAAAATCACAAACACCAAATCATGGTTGCGGCAACGTTAACTTCACCGTCGTCTCAACTCCTATGCTCAAGCTCCCGCTCTCTCTCTAACCTCTCTCCTCTCCAACAATGTCTGTTGGGGTCCAAAGCAGTCGTCTCATGCCCTAACAACTTCAGTTACAGCAAGAGGAGGCATGCGGCCGACGGAGTTAGGTGCATGGCGGTGGCAGCGGAGACGGAGACGGTGGAGCCAAAGAAGAAGAGCGGATACAAGATTCAGACGCTGACGGGCTGGCTGCTGAAGCAAGAGCAGGCCGGGGTGATTGACGCCGAGCTGACCATTGTGCTGTCGAGCATTTCGTTGGCGTGCAAGCAGATTGCTTCTTTGGTGCAGAGGGCAAGCATTTCCAACTTGACTGGAATTCAGGGTGCGGTTAATATCCAAGGAGAGGACCAGAAGAAACTTGATGTTGTCTCCAATGAGGTTTTCTCGAACTGCCTGAGATCAAGCGGAAGGACAGGGATTATAGCGTCAGAGGAAGAGGATGTGCCGGTGGCGGTGGAAGAGAGTTATTCCGGCAACTACATTGTGGTGTTTGACCCACTTGATGGATCATCCAACATTGATGCTGCTGTCTCTAATGGATCCATCTTTGGAATATACAGCCCAAATGATGAGTGCTTTGCAGACATTGAAGAGGACTCAACCCTTGACAGTGCGGAACAGAAATGTGTAGTGAACGTGTGCCAGCCAGGAAGCAACCTACTTGCTGCTGGCTACTGCATGTACTCAAGCTCTGTGATCTTTGTGCTCACAATTGGGACTGGTGTATTTGCATTTTCCTTGGACCCCATGTACGGAGAATTCGTCTTGACTCAAGAAAACATTCAGATTCCGAAAGCCGGAAAAATCTACTCGTTCAATGAAGGGAACTATCAGATGTGGGATGACAAGTTGAAGAAGTACATTGATCGATCTTAA

Protein Analysis

383

Amino Acids

41.88

Weight (kDa)

8.83

Isoelectric Point (pI)

47.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011238)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 211, 776
AccBSI CCGCTC 2 cut(s) 267, 432
AclI AACGTT 1 cut(s) 224
AclWI GGATC 3 cut(s) 787, 807, 820
AcoI YGGCCR 1 cut(s) 366
AcsI RAATTY 2 cut(s) 588, 1031
AcuI CTGAAG 2 cut(s) 325, 488
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 3 cut(s) 956, 1025, 1133
AfiI CCNNNNNNNGG 5 cut(s) 211, 616, 776, 1025, 1070
AflIII ACRYGT 1 cut(s) 909
AgsI TTSAA 3 cut(s) 863, 1090, 1126
AjnI CCWGG 1 cut(s) 919
AjuI GAANNNNNNNTTGG 2 cut(s) 638, 670
AluBI AGCT 3 cut(s) 261, 502, 963
AluI AGCT 3 cut(s) 261, 502, 963
Alw21I GWGCWC 1 cut(s) 981
Alw26I GTCTC 6 cut(s) 246, 328, 395, 401, 646, 808
AlwI GGATC 3 cut(s) 787, 807, 820
AlwNI CAGNNNCTG 1 cut(s) 451
AoxI GGCC 2 cut(s) 366, 480
ApeKI GCWGC 4 cut(s) 395, 463, 797, 938
ApoI RAATTY 2 cut(s) 588, 1031
ArsI GACNNNNNNTTYG 2 cut(s) 306, 338
Asp700I GAANNNNTTC 1 cut(s) 1053
AspS9I GGNCC 4 cut(s) 42, 309, 619, 1015
AsuC2I CCSGG 1 cut(s) 484
AsuHPI GGTGA 2 cut(s) 225, 499
AvaII GGWCC 4 cut(s) 42, 309, 619, 1015
BamHI GGATCC 1 cut(s) 812
BarI GAAGNNNNNNTAC 2 cut(s) 419, 451
Bbv12I GWGCWC 1 cut(s) 981
BbvI GCAGC 4 cut(s) 407, 450, 784, 925
BccI CCATC 2 cut(s) 770, 824
BciT130I CCWGG 1 cut(s) 921
BciVI GTATCC 1 cut(s) 428
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 484
BcoDI GTCTC 6 cut(s) 246, 328, 395, 401, 646, 808
BfuI GTATCC 1 cut(s) 428
BisI GCNGC 6 cut(s) 219, 366, 396, 464, 798, 939
BlsI GCNGC 6 cut(s) 220, 367, 397, 465, 799, 940
Bme1390I CCNGG 2 cut(s) 484, 921
Bme18I GGWCC 4 cut(s) 42, 309, 619, 1015
BmgT120I GGNCC 4 cut(s) 42, 309, 619, 1015
BmiI GGNNCC 6 cut(s) 43, 44, 310, 417, 814, 1017
BmrFI CCNGG 2 cut(s) 484, 921
BmsI GCATC 1 cut(s) 784
BplI GAGNNNNNCTC 2 cut(s) 641, 673
BpuEI CTTGAG 3 cut(s) 241, 943, 1029
BpuMI CCSGG 1 cut(s) 484
Bsa29I ATCGAT 1 cut(s) 1141
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 3 cut(s) 483, 610, 1011
BsaWI WCCGGW 1 cut(s) 159
BsaXI ACNNNNNCTCC 2 cut(s) 1020, 1050
Bsc4I CCNNNNNNNGG 5 cut(s) 211, 616, 776, 1025, 1070
Bse118I RCCGGY 1 cut(s) 718
Bse1I ACTGG 2 cut(s) 589, 997
BseBI CCWGG 1 cut(s) 921
BseCI ATCGAT 1 cut(s) 1141
BseDI CCNNGG 3 cut(s) 483, 610, 1011
BseGI GGATG 3 cut(s) 718, 782, 1120
BseLI CCNNNNNNNGG 5 cut(s) 211, 616, 776, 1025, 1070
BseMII CTCAG 1 cut(s) 659
BseNI ACTGG 2 cut(s) 589, 997
BseRI GAGGAG 2 cut(s) 276, 370
BseX3I CGGCCG 1 cut(s) 366
BseXI GCAGC 4 cut(s) 407, 450, 784, 925
BsgI GTGCAG 1 cut(s) 578
Bsh1285I CGRYCG 1 cut(s) 369
BshFI GGCC 2 cut(s) 368, 482
BshVI ATCGAT 1 cut(s) 1141
BsiEI CGRYCG 1 cut(s) 369
BsiHKAI GWGCWC 1 cut(s) 981
BsiSI CCGG 5 cut(s) 160, 483, 719, 744, 1071
BslFI GGGAC 2 cut(s) 55, 1003
BslI CCNNNNNNNGG 5 cut(s) 211, 616, 776, 1025, 1070
BsmAI GTCTC 6 cut(s) 246, 328, 395, 401, 646, 808
BsmBI CGTCTC 4 cut(s) 246, 328, 395, 401
BsmFI GGGAC 2 cut(s) 55, 1003
BsnI GGCC 2 cut(s) 368, 482
Bsp1286I GDGCHC 1 cut(s) 981
Bsp143I GATC 7 cut(s) 3, 671, 779, 812, 969, 1138, 1142
BspANI GGCC 2 cut(s) 368, 482
BspCNI CTCAG 1 cut(s) 660
BspDI ATCGAT 1 cut(s) 1141
BspLI GGNNCC 6 cut(s) 43, 44, 310, 417, 814, 1017
BspPI GGATC 3 cut(s) 787, 807, 820
BspQI GCTCTTC 1 cut(s) 422
BsrBI CCGCTC 2 cut(s) 267, 432
BsrFI RCCGGY 1 cut(s) 718
BsrI ACTGG 2 cut(s) 589, 997
BssAI RCCGGY 1 cut(s) 718
BssECI CCNNGG 3 cut(s) 483, 610, 1011
BssMI GATC 7 cut(s) 3, 671, 779, 812, 969, 1138, 1142
BssNI GRCGYC 1 cut(s) 495
BssT1I CCWWGG 2 cut(s) 610, 1011
Bst2UI CCWGG 1 cut(s) 921
Bst4CI ACNGT 3 cut(s) 237, 412, 884
Bst6I CTCTTC 4 cut(s) 422, 702, 726, 858
BstACI GRCGYC 1 cut(s) 495
BstC8I GCNNGC 8 cut(s) 363, 461, 480, 535, 539, 568, 917, 943
BstDEI CTNAG 1 cut(s) 668
BstF5I GGATG 3 cut(s) 718, 782, 1120
BstKTI GATC 7 cut(s) 6, 674, 782, 815, 972, 1141, 1145
BstMAI GTCTC 6 cut(s) 246, 328, 395, 401, 646, 808
BstMBI GATC 7 cut(s) 3, 671, 779, 812, 969, 1138, 1142
BstMCI CGRYCG 1 cut(s) 369
BstMWI GCNNNNNNNGC 2 cut(s) 395, 469
BstNI CCWGG 1 cut(s) 921
BstNSI RCATGY 2 cut(s) 365, 955
BstSCI CCNGG 2 cut(s) 482, 919
BstV1I GCAGC 4 cut(s) 407, 450, 784, 925
BstX2I RGATCY 1 cut(s) 812
BstYI RGATCY 1 cut(s) 812
BstZI CGGCCG 1 cut(s) 366
Bsu15I ATCGAT 1 cut(s) 1141
BsuI GTATCC 1 cut(s) 428
BsuRI GGCC 2 cut(s) 368, 482
BsuTUI ATCGAT 1 cut(s) 1141
BtsCI GGATG 3 cut(s) 718, 782, 1120
BtsIMutI CAGTG 1 cut(s) 889
Cac8I GCNNGC 8 cut(s) 363, 461, 480, 535, 539, 568, 917, 943
CaiI CAGNNNCTG 1 cut(s) 451
Cfr10I RCCGGY 1 cut(s) 718
Cfr13I GGNCC 4 cut(s) 42, 309, 619, 1015
ClaI ATCGAT 1 cut(s) 1141
CseI GACGC 3 cut(s) 457, 503, 687
Csp6I GTAC 3 cut(s) 955, 1024, 1132
CspCI CAANNNNNGTGG 2 cut(s) 19, 54
CviAII CATG 6 cut(s) 211, 327, 362, 385, 952, 1021
CviQI GTAC 3 cut(s) 955, 1024, 1132
DdeI CTNAG 1 cut(s) 668
DpnI GATC 7 cut(s) 5, 673, 781, 814, 971, 1140, 1144
DpnII GATC 7 cut(s) 3, 671, 779, 812, 969, 1138, 1142
EaeI YGGCCR 1 cut(s) 366
EagI CGGCCG 1 cut(s) 366
Eam1104I CTCTTC 4 cut(s) 422, 702, 726, 858
EarI CTCTTC 4 cut(s) 422, 702, 726, 858
EclXI CGGCCG 1 cut(s) 366
Eco130I CCWWGG 2 cut(s) 610, 1011
Eco47I GGWCC 4 cut(s) 42, 309, 619, 1015
Eco52I CGGCCG 1 cut(s) 366
Eco57I CTGAAG 2 cut(s) 325, 488
EcoO109I RGGNCCY 1 cut(s) 42
EcoRI GAATTC 2 cut(s) 588, 1031
EcoRII CCWGG 1 cut(s) 919
EcoT14I CCWWGG 2 cut(s) 610, 1011
ErhI CCWWGG 2 cut(s) 610, 1011
Esp3I CGTCTC 4 cut(s) 246, 328, 395, 401
FaeI CATG 6 cut(s) 214, 330, 365, 388, 955, 1024
FaqI GGGAC 2 cut(s) 55, 1003
FatI CATG 6 cut(s) 210, 326, 361, 384, 951, 1020
FauI CCCGC 1 cut(s) 272
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 6 cut(s) 219, 366, 396, 464, 798, 939
FokI GGATG 3 cut(s) 725, 769, 1127
Fsp4HI GCNGC 6 cut(s) 219, 366, 396, 464, 798, 939
GluI GCNGC 6 cut(s) 219, 366, 396, 464, 798, 939
HaeIII GGCC 2 cut(s) 368, 482
HapII CCGG 5 cut(s) 160, 483, 719, 744, 1071
HgaI GACGC 3 cut(s) 457, 503, 687
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 6 cut(s) 214, 330, 365, 388, 955, 1024
HincII GTYRAC 1 cut(s) 228
HindII GTYRAC 1 cut(s) 228
HinfI GANTC 4 cut(s) 442, 869, 1042, 1060
HpaI GTTAAC 1 cut(s) 228
HpaII CCGG 5 cut(s) 160, 483, 719, 744, 1071
HphI GGTGA 2 cut(s) 225, 499
Hpy166II GTNNAC 2 cut(s) 228, 907
Hpy188I TCNGA 5 cut(s) 447, 703, 1059, 1065, 1107
Hpy188III TCNNGA 3 cut(s) 658, 1039, 1046
Hpy8I GTNNAC 2 cut(s) 228, 907
Hpy99I CGWCG 2 cut(s) 241, 374
HpyAV CCTTC 2 cut(s) 675, 1088
HpyCH4III ACNGT 3 cut(s) 237, 412, 884
HpyCH4IV ACGT 2 cut(s) 224, 909
HpyCH4V TGCA 6 cut(s) 384, 537, 559, 854, 951, 1004
HpyF10VI GCNNNNNNNGC 2 cut(s) 395, 469
HpyF3I CTNAG 1 cut(s) 668
HpySE526I ACGT 2 cut(s) 224, 909
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 6 cut(s) 214, 330, 365, 388, 955, 1024
KflI GGGWCCC 1 cut(s) 42
Ksp22I TGATCA 1 cut(s) 3
KspAI GTTAAC 1 cut(s) 228
Kzo9I GATC 7 cut(s) 3, 671, 779, 812, 969, 1138, 1142
LguI GCTCTTC 1 cut(s) 422
LmnI GCTCC 2 cut(s) 266, 415
Lsp1109I GCAGC 4 cut(s) 407, 450, 784, 925
LweI GCATC 1 cut(s) 784
MaeII ACGT 2 cut(s) 224, 909
MaeIII GTNAC 1 cut(s) 344
MalI GATC 7 cut(s) 5, 673, 781, 814, 971, 1140, 1144
MbiI CCGCTC 2 cut(s) 267, 432
MboI GATC 7 cut(s) 3, 671, 779, 812, 969, 1138, 1142
MboII GAAGA 7 cut(s) 436, 439, 637, 719, 743, 875, 1138
MfeI CAATTG 1 cut(s) 984
MflI RGATCY 1 cut(s) 812
MhlI GDGCHC 1 cut(s) 981
MluCI AATT 4 cut(s) 72, 588, 984, 1031
MlyI GAGTC 2 cut(s) 863, 1036
MmeI TCCRAC 3 cut(s) 316, 600, 810
MroXI GAANNNNTTC 1 cut(s) 1053
MseI TTAA 3 cut(s) 227, 603, 1147
MslI CAYNNNNRTG 2 cut(s) 389, 758
MspA1I CMGCKG 1 cut(s) 398
MspI CCGG 5 cut(s) 160, 483, 719, 744, 1071
MspR9I CCNGG 2 cut(s) 484, 921
MunI CAATTG 1 cut(s) 984
MvaI CCWGG 1 cut(s) 921
MwoI GCNNNNNNNGC 2 cut(s) 395, 469
NciI CCSGG 1 cut(s) 484
NdeII GATC 7 cut(s) 3, 671, 779, 812, 969, 1138, 1142
NlaIII CATG 6 cut(s) 214, 330, 365, 388, 955, 1024
NlaIV GGNNCC 6 cut(s) 43, 44, 310, 417, 814, 1017
NmeAIII GCCGAG 1 cut(s) 523
NspI RCATGY 2 cut(s) 365, 955
PaeI GCATGC 1 cut(s) 365
PciSI GCTCTTC 1 cut(s) 422
PcsI WCGNNNNNNNCGW 2 cut(s) 524, 1032
PdmI GAANNNNTTC 1 cut(s) 1053
PfeI GAWTC 2 cut(s) 442, 1060
PflMI CCANNNNNTGG 2 cut(s) 211, 776
PkrI GCNGC 6 cut(s) 220, 367, 397, 465, 799, 940
PleI GAGTC 2 cut(s) 863, 1036
PpsI GAGTC 2 cut(s) 863, 1036
PpuMI RGGWCCY 1 cut(s) 42
Psp1406I AACGTT 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 42
Psp6I CCWGG 1 cut(s) 919
PspGI CCWGG 1 cut(s) 919
PspN4I GGNNCC 6 cut(s) 43, 44, 310, 417, 814, 1017
PspPI GGNCC 4 cut(s) 42, 309, 619, 1015
PspPPI RGGWCCY 1 cut(s) 42
PstNI CAGNNNCTG 1 cut(s) 451
PsuI RGATCY 1 cut(s) 812
RsaI GTAC 3 cut(s) 956, 1025, 1133
RsaNI GTAC 3 cut(s) 955, 1024, 1132
RseI CAYNNNNRTG 2 cut(s) 389, 758
SapI GCTCTTC 1 cut(s) 422
SaqAI TTAA 3 cut(s) 227, 603, 1147
SatI GCNGC 6 cut(s) 219, 366, 396, 464, 798, 939
Sau3AI GATC 7 cut(s) 3, 671, 779, 812, 969, 1138, 1142
Sau96I GGNCC 4 cut(s) 42, 309, 619, 1015
SchI GAGTC 2 cut(s) 863, 1036
ScrFI CCNGG 2 cut(s) 484, 921
SduI GDGCHC 1 cut(s) 981
SfaNI GCATC 1 cut(s) 784
SinI GGWCC 4 cut(s) 42, 309, 619, 1015
SmiMI CAYNNNNRTG 2 cut(s) 389, 758
SmlI CTYRAG 3 cut(s) 256, 958, 1044
SmoI CTYRAG 3 cut(s) 256, 958, 1044
SphI GCATGC 1 cut(s) 365
Sse9I AATT 4 cut(s) 72, 588, 984, 1031
StyD4I CCNGG 2 cut(s) 482, 919
StyI CCWWGG 2 cut(s) 610, 1011
TaaI ACNGT 3 cut(s) 237, 412, 884
TaiI ACGT 2 cut(s) 227, 912
TaqI TCGA 3 cut(s) 518, 659, 1141
TasI AATT 4 cut(s) 72, 588, 984, 1031
TatI WGTACW 2 cut(s) 954, 1131
TauI GCSGC 2 cut(s) 221, 368
TfiI GAWTC 2 cut(s) 442, 1060
Tru1I TTAA 3 cut(s) 227, 603, 1147
Tru9I TTAA 3 cut(s) 227, 603, 1147
TscAI CASTG 1 cut(s) 889
TseI GCWGC 4 cut(s) 395, 463, 797, 938
TspDTI ATGAA 1 cut(s) 1107
TspGWI ACGGA 3 cut(s) 387, 419, 1041
TspRI CASTG 1 cut(s) 889
Van91I CCANNNNNTGG 2 cut(s) 211, 776
VpaK11BI GGWCC 4 cut(s) 42, 309, 619, 1015
XapI RAATTY 2 cut(s) 588, 1031
XceI RCATGY 2 cut(s) 365, 955
XmnI GAANNNNTTC 1 cut(s) 1053
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.