Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0011238

Physical Location & Seq

Genomic Coordinates Forward (+)

23272338 .. 23273713

Gene Structure 1376 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1143400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGCGCCAACCTTTATAAATAGAGGATCAAGCGGAAGGACAGGGATTATAGCATCAGAGGAAGAGGATGTGCCGGTGGCGGTGGAAGAGAGTTATTCCGGCAACTACATTGTGGTGTTTGACCCACTTGATGGATCATCCAACATTGATGCTGCTGTCTCCACTGGATCCATCTTTGGAATATACAGCCCAAATGATGAGTGCTTTGCAGACATTGAAGAGGACTCAACCCTTGACAGTGCGGAACAGAAATGTGTAGTGAACGTGTGCCAGCCAGGAAGCAACTTACTTGCTGCCGGCTACTGCATGTACTCAAGCTCTGTGATCTTTGTGCTCACAATTGGGACTGGTGTATTTGCATTTTCCTTGGACCCCATGTACGGAGAATTCGTCTTGACTCAAGAAAACATTCAGATTCCGAAAGCCGGAAAAATCTACTCGTTCAATGAAGGGAACTATCAGATGTGGGATGACAAGTTGAAGAAGTACATTGATGATCTTAAGGACCCAGGTCCTAGTGGCAAGCCCTACTCTGCAAGGTACATCGGCAGCTTGGTTGGTGACTTCCACCGGACGCTGCTCTATGGCGGCATTTATGGTTACCCTAGAGACAAGAAGAGCAAGAATGGGAAGCTGAGGTTGTTGTATGAGTGCGCACCAATGAGCTTTATAGTGGAACAAGCCGGCGGGAAAGGGTCGGATGGCAGTTCCAGAGTACTTGACATTCAACCAACTGAGATCCATCAACGTGTTCCTCTTTACATCGGAAGCATGGAGGAGGTGGAGAAATTGGAGAAGTACTTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006091 GO:0006094 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009311 GO:0009312 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009773 GO:0009987 GO:0010033 GO:0010319 GO:0015979 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019318 GO:0019319 GO:0019637 GO:0019684 GO:0022900 GO:0030388 GO:0031967 GO:0031975 GO:0034637 GO:0042132 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046364 GO:0048046 GO:0050308 GO:0050896 GO:0055114 GO:0071704 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

270

Amino Acids

29.46

Weight (kDa)

4.59

Isoelectric Point (pI)

38.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	10 - 135	3.8e-32	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C	PF18913	139 - 268	1.2e-50	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54050 AT3G54050
fragaria_vesca	FvH4_6g12370 FvH4_6g12370
malus_domestica	MD04G1143200.v1.1 MD04G1143400.v1.1 MD12G1157400.v1.1 MD12G1157600.v1.1
prunus_persica	Prupe.6G267900_v2.0.a1
pyrus_communis	pycom04g13010 pycom12g14970
rosa_chinensis	RchiOBHm_Chr3g0464191
rosa_laevigata	RLG00000024716
rosa_multiflora	Rmu_sc0006492.1_g000023
rosa_roxburghii	Rroxscaffold_6G00415940
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh3BG132500 Rh3CG134700 Rh3DG133700
rosa_wichuraiana	Rw3G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	17
Acc16I	TGCGCA	1 cut(s)	655
AccB1I	GGYRCC	1 cut(s)	4
AccB7I	CCANNNNNTGG	1 cut(s)	131
AciI	CCGC	5 cut(s)	33, 80, 242, 588, 687
AclWI	GGATC	5 cut(s)	34, 142, 162, 175, 733
AcsI	RAATTY	1 cut(s)	386
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	6 cut(s)	311, 380, 488, 542, 717, 800
AfiI	CCNNNNNNNGG	3 cut(s)	131, 380, 425
AflII	CTTAAG	1 cut(s)	500
AflIII	ACRYGT	2 cut(s)	264, 748
AgsI	TTSAA	4 cut(s)	218, 445, 481, 728
AjnI	CCWGG	2 cut(s)	274, 508
AluBI	AGCT	4 cut(s)	318, 552, 634, 666
AluI	AGCT	4 cut(s)	318, 552, 634, 666
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	2 cut(s)	163, 603
AlwI	GGATC	5 cut(s)	34, 142, 162, 175, 733
ApeKI	GCWGC	4 cut(s)	152, 293, 549, 577
ApoI	RAATTY	1 cut(s)	386
Asp700I	GAANNNNTTC	1 cut(s)	408
AspLEI	GCGC	2 cut(s)	7, 656
AspS9I	GGNCC	3 cut(s)	370, 505, 512
AsuHPI	GGTGA	1 cut(s)	572
AvaII	GGWCC	3 cut(s)	370, 505, 512
BamHI	GGATCC	1 cut(s)	167
BanI	GGYRCC	1 cut(s)	4
Bbv12I	GWGCWC	1 cut(s)	336
BbvCI	CCTCAGC	1 cut(s)	635
BbvI	GCAGC	4 cut(s)	139, 280, 561, 564
BccI	CCATC	4 cut(s)	125, 179, 695, 750
BciT130I	CCWGG	2 cut(s)	276, 510
BcoDI	GTCTC	2 cut(s)	163, 603
BfaI	CTAG	2 cut(s)	516, 606
BfoI	RGCGCY	1 cut(s)	8
BfrI	CTTAAG	1 cut(s)	500
BisI	GCNGC	5 cut(s)	153, 294, 550, 578, 589
BlsI	GCNGC	5 cut(s)	154, 295, 551, 579, 590
BmcAI	AGTACT	2 cut(s)	717, 800
Bme1390I	CCNGG	2 cut(s)	276, 510
Bme18I	GGWCC	3 cut(s)	370, 505, 512
BmgT120I	GGNCC	3 cut(s)	370, 505, 512
BmiI	GGNNCC	4 cut(s)	6, 169, 372, 507
BmrFI	CCNGG	2 cut(s)	276, 510
BmsI	GCATC	2 cut(s)	62, 139
BoxI	GACNNNNGTC	1 cut(s)	510
Bpu10I	CCTNAGC	1 cut(s)	635
BpuEI	CTTGAG	2 cut(s)	298, 384
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	366, 508
BsaWI	WCCGGW	1 cut(s)	570
BsaXI	ACNNNNNCTCC	2 cut(s)	375, 405
Bsc4I	CCNNNNNNNGG	3 cut(s)	131, 380, 425
Bse118I	RCCGGY	3 cut(s)	73, 296, 683
Bse1I	ACTGG	2 cut(s)	169, 352
BseBI	CCWGG	2 cut(s)	276, 510
BseDI	CCNNGG	2 cut(s)	366, 508
BseGI	GGATG	4 cut(s)	73, 137, 475, 706
BseLI	CCNNNNNNNGG	3 cut(s)	131, 380, 425
BseMII	CTCAG	2 cut(s)	626, 726
BseNI	ACTGG	2 cut(s)	169, 352
BseRI	GAGGAG	1 cut(s)	791
BseXI	GCAGC	4 cut(s)	139, 280, 561, 564
BshNI	GGYRCC	1 cut(s)	4
BsiHKAI	GWGCWC	1 cut(s)	336
BsiSI	CCGG	6 cut(s)	74, 99, 297, 426, 571, 684
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	3 cut(s)	131, 380, 425
BsmAI	GTCTC	2 cut(s)	163, 603
BsmFI	GGGAC	1 cut(s)	358
Bsp1286I	GDGCHC	1 cut(s)	336
Bsp143I	GATC	6 cut(s)	26, 134, 167, 324, 496, 738
BspACI	CCGC	5 cut(s)	33, 80, 242, 588, 687
BspCNI	CTCAG	2 cut(s)	627, 727
BspLI	GGNNCC	4 cut(s)	6, 169, 372, 507
BspPI	GGATC	5 cut(s)	34, 142, 162, 175, 733
BspQI	GCTCTTC	1 cut(s)	611
BspT107I	GGYRCC	1 cut(s)	4
BspTI	CTTAAG	1 cut(s)	500
BsrFI	RCCGGY	3 cut(s)	73, 296, 683
BsrI	ACTGG	2 cut(s)	169, 352
BssAI	RCCGGY	3 cut(s)	73, 296, 683
BssECI	CCNNGG	2 cut(s)	366, 508
BssMI	GATC	6 cut(s)	26, 134, 167, 324, 496, 738
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	366
Bst2UI	CCWGG	2 cut(s)	276, 510
Bst4CI	ACNGT	1 cut(s)	239
Bst6I	CTCTTC	4 cut(s)	57, 81, 213, 611
BstACI	GRCGYC	1 cut(s)	5
BstAFI	CTTAAG	1 cut(s)	500
BstC8I	GCNNGC	4 cut(s)	272, 298, 524, 685
BstDEI	CTNAG	3 cut(s)	635, 735, 802
BstEII	GGTNACC	1 cut(s)	599
BstF5I	GGATG	4 cut(s)	73, 137, 475, 706
BstH2I	RGCGCY	1 cut(s)	8
BstHHI	GCGC	2 cut(s)	7, 656
BstKTI	GATC	6 cut(s)	29, 137, 170, 327, 499, 741
BstMAI	GTCTC	2 cut(s)	163, 603
BstMBI	GATC	6 cut(s)	26, 134, 167, 324, 496, 738
BstNI	CCWGG	2 cut(s)	276, 510
BstNSI	RCATGY	1 cut(s)	310
BstPAI	GACNNNNGTC	1 cut(s)	510
BstPI	GGTNACC	1 cut(s)	599
BstSCI	CCNGG	2 cut(s)	274, 508
BstV1I	GCAGC	4 cut(s)	139, 280, 561, 564
BstX2I	RGATCY	2 cut(s)	167, 738
BstYI	RGATCY	2 cut(s)	167, 738
BtsCI	GGATG	4 cut(s)	73, 137, 475, 706
BtsIMutI	CAGTG	2 cut(s)	162, 244
Cac8I	GCNNGC	4 cut(s)	272, 298, 524, 685
CfoI	GCGC	2 cut(s)	7, 656
Cfr10I	RCCGGY	3 cut(s)	73, 296, 683
Cfr13I	GGNCC	3 cut(s)	370, 505, 512
CseI	GACGC	1 cut(s)	583
Csp6I	GTAC	6 cut(s)	310, 379, 487, 541, 716, 799
CviAII	CATG	4 cut(s)	307, 376, 772, 807
CviQI	GTAC	6 cut(s)	310, 379, 487, 541, 716, 799
DdeI	CTNAG	3 cut(s)	635, 735, 802
DinI	GGCGCC	1 cut(s)	6
DpnI	GATC	6 cut(s)	28, 136, 169, 326, 498, 740
DpnII	GATC	6 cut(s)	26, 134, 167, 324, 496, 738
Eam1104I	CTCTTC	4 cut(s)	57, 81, 213, 611
EarI	CTCTTC	4 cut(s)	57, 81, 213, 611
Eco130I	CCWWGG	1 cut(s)	366
Eco47I	GGWCC	3 cut(s)	370, 505, 512
Eco91I	GGTNACC	1 cut(s)	599
EcoO109I	RGGNCCY	2 cut(s)	505, 512
EcoO65I	GGTNACC	1 cut(s)	599
EcoRI	GAATTC	1 cut(s)	386
EcoRII	CCWGG	2 cut(s)	274, 508
EcoT14I	CCWWGG	1 cut(s)	366
EgeI	GGCGCC	1 cut(s)	6
EheI	GGCGCC	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	366
FaeI	CATG	4 cut(s)	310, 379, 775, 810
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	4 cut(s)	306, 375, 771, 806
FauI	CCCGC	1 cut(s)	680
Fnu4HI	GCNGC	5 cut(s)	153, 294, 550, 578, 589
FokI	GGATG	4 cut(s)	80, 124, 482, 713
Fsp4HI	GCNGC	5 cut(s)	153, 294, 550, 578, 589
FspAI	RTGCGCAY	1 cut(s)	655
FspBI	CTAG	2 cut(s)	516, 606
FspI	TGCGCA	1 cut(s)	655
GlaI	GCGC	2 cut(s)	6, 655
GluI	GCNGC	5 cut(s)	153, 294, 550, 578, 589
HaeII	RGCGCY	1 cut(s)	8
HapII	CCGG	6 cut(s)	74, 99, 297, 426, 571, 684
HgaI	GACGC	1 cut(s)	583
HhaI	GCGC	2 cut(s)	7, 656
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	310, 379, 775, 810
Hin6I	GCGC	2 cut(s)	5, 654
HinP1I	GCGC	2 cut(s)	5, 654
HinfI	GANTC	3 cut(s)	224, 397, 415
HpaII	CCGG	6 cut(s)	74, 99, 297, 426, 571, 684
HphI	GGTGA	1 cut(s)	572
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	6 cut(s)	58, 414, 420, 462, 700, 767
Hpy188III	TCNNGA	3 cut(s)	394, 401, 711
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	2 cut(s)	30, 443
HpyCH4III	ACNGT	1 cut(s)	239
HpyCH4IV	ACGT	2 cut(s)	264, 748
HpyCH4V	TGCA	4 cut(s)	209, 306, 359, 536
HpyF3I	CTNAG	3 cut(s)	635, 735, 802
HpySE526I	ACGT	2 cut(s)	264, 748
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	310, 379, 775, 810
HspAI	GCGC	2 cut(s)	5, 654
KasI	GGCGCC	1 cut(s)	4
KroI	GCCGGC	2 cut(s)	296, 683
KroNI	GCCGGC	2 cut(s)	298, 685
Kzo9I	GATC	6 cut(s)	26, 134, 167, 324, 496, 738
LguI	GCTCTTC	1 cut(s)	611
Lsp1109I	GCAGC	4 cut(s)	139, 280, 561, 564
LweI	GCATC	2 cut(s)	62, 139
MaeI	CTAG	2 cut(s)	516, 606
MaeII	ACGT	2 cut(s)	264, 748
MaeIII	GTNAC	2 cut(s)	560, 599
MalI	GATC	6 cut(s)	28, 136, 169, 326, 498, 740
MboI	GATC	6 cut(s)	26, 134, 167, 324, 496, 738
MboII	GAAGA	5 cut(s)	74, 98, 230, 493, 628
MfeI	CAATTG	1 cut(s)	339
MflI	RGATCY	2 cut(s)	167, 738
MhlI	GDGCHC	1 cut(s)	336
MluCI	AATT	3 cut(s)	339, 386, 788
Mly113I	GGCGCC	1 cut(s)	5
MlyI	GAGTC	2 cut(s)	218, 391
MmeI	TCCRAC	2 cut(s)	165, 678
MnlI	CCTC	8 cut(s)	17, 52, 58, 214, 630, 765, 769, 772
MroNI	GCCGGC	2 cut(s)	296, 683
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	2 cut(s)	113, 747
MspCI	CTTAAG	1 cut(s)	500
MspI	CCGG	6 cut(s)	74, 99, 297, 426, 571, 684
MspR9I	CCNGG	2 cut(s)	276, 510
MunI	CAATTG	1 cut(s)	339
MvaI	CCWGG	2 cut(s)	276, 510
NaeI	GCCGGC	2 cut(s)	298, 685
NarI	GGCGCC	1 cut(s)	5
NdeII	GATC	6 cut(s)	26, 134, 167, 324, 496, 738
NgoMIV	GCCGGC	2 cut(s)	296, 683
NlaIII	CATG	4 cut(s)	310, 379, 775, 810
NlaIV	GGNNCC	4 cut(s)	6, 169, 372, 507
NmuCI	GTSAC	1 cut(s)	560
NsbI	TGCGCA	1 cut(s)	655
NspI	RCATGY	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	611
PcsI	WCGNNNNNNNCGW	1 cut(s)	387
PdiI	GCCGGC	2 cut(s)	298, 685
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	1 cut(s)	415
PflMI	CCANNNNNTGG	1 cut(s)	131
PkrI	GCNGC	5 cut(s)	154, 295, 551, 579, 590
PleI	GAGTC	2 cut(s)	218, 391
PluTI	GGCGCC	1 cut(s)	8
PpsI	GAGTC	2 cut(s)	218, 391
PpuMI	RGGWCCY	2 cut(s)	505, 512
PshAI	GACNNNNGTC	1 cut(s)	510
PsiI	TTATAA	1 cut(s)	17
Psp5II	RGGWCCY	2 cut(s)	505, 512
Psp6I	CCWGG	2 cut(s)	274, 508
PspEI	GGTNACC	1 cut(s)	599
PspGI	CCWGG	2 cut(s)	274, 508
PspN4I	GGNNCC	4 cut(s)	6, 169, 372, 507
PspPI	GGNCC	3 cut(s)	370, 505, 512
PspPPI	RGGWCCY	2 cut(s)	505, 512
PsuI	RGATCY	2 cut(s)	167, 738
RsaI	GTAC	6 cut(s)	311, 380, 488, 542, 717, 800
RsaNI	GTAC	6 cut(s)	310, 379, 487, 541, 716, 799
RseI	CAYNNNNRTG	2 cut(s)	113, 747
SapI	GCTCTTC	1 cut(s)	611
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	5 cut(s)	153, 294, 550, 578, 589
Sau3AI	GATC	6 cut(s)	26, 134, 167, 324, 496, 738
Sau96I	GGNCC	3 cut(s)	370, 505, 512
ScaI	AGTACT	2 cut(s)	717, 800
SchI	GAGTC	2 cut(s)	218, 391
ScrFI	CCNGG	2 cut(s)	276, 510
SduI	GDGCHC	1 cut(s)	336
SfaNI	GCATC	2 cut(s)	62, 139
SfoI	GGCGCC	1 cut(s)	6
SinI	GGWCC	3 cut(s)	370, 505, 512
SmiMI	CAYNNNNRTG	2 cut(s)	113, 747
SmlI	CTYRAG	3 cut(s)	313, 399, 500
SmoI	CTYRAG	3 cut(s)	313, 399, 500
Sse9I	AATT	3 cut(s)	339, 386, 788
SsiI	CCGC	5 cut(s)	33, 80, 242, 588, 687
SspDI	GGCGCC	1 cut(s)	4
SspMI	CTAG	2 cut(s)	516, 606
StyD4I	CCNGG	2 cut(s)	274, 508
StyI	CCWWGG	1 cut(s)	366
TaaI	ACNGT	1 cut(s)	239
TaiI	ACGT	2 cut(s)	267, 751
TasI	AATT	3 cut(s)	339, 386, 788
TatI	WGTACW	4 cut(s)	309, 486, 715, 798
TauI	GCSGC	1 cut(s)	591
TfiI	GAWTC	1 cut(s)	415
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	2 cut(s)	169, 244
TseFI	GTSAC	1 cut(s)	560
TseI	GCWGC	4 cut(s)	152, 293, 549, 577
Tsp45I	GTSAC	1 cut(s)	560
TspDTI	ATGAA	1 cut(s)	462
TspGWI	ACGGA	1 cut(s)	396
TspRI	CASTG	2 cut(s)	169, 244
Van91I	CCANNNNNTGG	1 cut(s)	131
Vha464I	CTTAAG	1 cut(s)	500
VpaK11BI	GGWCC	3 cut(s)	370, 505, 512
XapI	RAATTY	1 cut(s)	386
XceI	RCATGY	1 cut(s)	310
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	2 cut(s)	516, 606
ZrmI	AGTACT	2 cut(s)	717, 800

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.