Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0011238

Physical Location & Seq

Genomic Coordinates Forward (+)

23805973 .. 23807392

Gene Structure 1420 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1157600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGTTTTCTCAAATTGCCTGAGATCAAGCGGAAGGACAGGGATTATAGCATCGGAGGAAGAGGATGTGCCAGTCGCGGTGGAAGAGAGTTATTCCGGCAACTACATTGTGGTGTTTGACCCACTTGATGGATCATCCAACATTGATGCTGCTGTCTCCACTGGATCCATCTTCGGAATATACAGCCCGAATGATGAATGCTTTGCACACATTGAAGAGGACTCAACCCTTGATAGTGTGGAACAGAAATGTGTAGTGAGCGTGTGCCAGCCAGGAAGCAACCTACTTGCTGCTGGCTACTGCATGTATTCAAGCTCTGTGATCTTTGTGCTCACAATTGGGACTGGTGTTTTTGCATTTTCCTTGGACCCCATGTACGGAGAATTCGTCTTGACTCAAGAAAACATTCAGATTCCAAAAGCCGGAAAAATTTACTCATTCAATGAAGGGAACTATCAGATGTGGGATGACAAGTTGAAGAAGTACATTGATGATCTTAAGGACCCAGGTCCTAGTGGCAAGCCCTACTCTGCAAGGTACATTGGCAGCTTGGTTGGTGACTTCCACCGGACGCTGCTCTATGGCGGCATTTATGGTTACCCTAGAGACAAGAAGAGCAAGAATGGGAAGCTGAGGCTGTTGTATGAGTGTGCACCAATGAGCTTTATAGTGGAACAAGCTGGCGGGAAAGGGTCCGATGGCAGTTCCAGAGTACTTGACATTGAACCAACTGAGATCCATCAACGTGTTCCGCTTTACATCGGAAGCGTGGATGAGGTGGAGAAATTGGAGAAGTACTTAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005984 GO:0005985 GO:0005986 GO:0005996 GO:0006000 GO:0006002 GO:0006006 GO:0006091 GO:0006094 GO:0006793 GO:0006796 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009266 GO:0009311 GO:0009312 GO:0009409 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009719 GO:0009725 GO:0009735 GO:0009767 GO:0009773 GO:0009987 GO:0010033 GO:0010319 GO:0015979 GO:0016051 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019203 GO:0019318 GO:0019319 GO:0019637 GO:0019684 GO:0022900 GO:0030388 GO:0031967 GO:0031975 GO:0034637 GO:0042132 GO:0042221 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044262 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046351 GO:0046364 GO:0048046 GO:0050308 GO:0050896 GO:0055114 GO:0071704 GO:1901135 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00051 ko00680 ko00710 ko01100 ko01110 ko01120 ko01130 ko01200 ko04152 ko04910 map00010 map00030 map00051 map00680 map00710 map01100 map01110 map01120 map01130 map01200 map04152 map04910

Pfam Domains

Protein Families

FBPase

Protein Analysis

269

Amino Acids

29.4

Weight (kDa)

4.64

Isoelectric Point (pI)

41.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FBPase	PF00316	2 - 134	9.7e-34	Fructose-1-6-bisphosphatase, N-terminal domain
FBPase_C	PF18913	138 - 267	2.4e-50	Fructose-1-6-bisphosphatase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011238)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54050 AT3G54050
fragaria_vesca	FvH4_6g12370 FvH4_6g12370
malus_domestica	MD04G1143200.v1.1 MD04G1143400.v1.1 MD12G1157400.v1.1 MD12G1157600.v1.1
prunus_persica	Prupe.6G267900_v2.0.a1
pyrus_communis	pycom04g13010 pycom12g14970
rosa_chinensis	RchiOBHm_Chr3g0464191
rosa_laevigata	RLG00000024716
rosa_multiflora	Rmu_sc0006492.1_g000023
rosa_roxburghii	Rroxscaffold_6G00415940
rosa_rugosa	Rorug03G0070900
rosa_samantha	Rh3BG132500 Rh3CG134700 Rh3DG133700
rosa_wichuraiana	Rw3G010840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	128
AccII	CGCG	1 cut(s)	77
AciI	CCGC	5 cut(s)	30, 77, 585, 684, 752
AclWI	GGATC	4 cut(s)	139, 159, 172, 730
AcsI	RAATTY	2 cut(s)	383, 429
AfaI	GTAC	5 cut(s)	377, 485, 539, 714, 797
AfiI	CCNNNNNNNGG	3 cut(s)	128, 377, 422
AflII	CTTAAG	1 cut(s)	497
AflIII	ACRYGT	1 cut(s)	745
AgsI	TTSAA	5 cut(s)	215, 312, 442, 478, 725
AjnI	CCWGG	2 cut(s)	271, 505
AluBI	AGCT	5 cut(s)	315, 549, 631, 663, 680
AluI	AGCT	5 cut(s)	315, 549, 631, 663, 680
Alw21I	GWGCWC	2 cut(s)	333, 655
Alw26I	GTCTC	2 cut(s)	160, 600
Alw44I	GTGCAC	1 cut(s)	651
AlwI	GGATC	4 cut(s)	139, 159, 172, 730
ApaLI	GTGCAC	1 cut(s)	651
ApeKI	GCWGC	4 cut(s)	149, 290, 546, 574
ApoI	RAATTY	2 cut(s)	383, 429
Asp700I	GAANNNNTTC	1 cut(s)	405
AspS9I	GGNCC	4 cut(s)	367, 502, 509, 693
AsuHPI	GGTGA	1 cut(s)	569
AvaII	GGWCC	4 cut(s)	367, 502, 509, 693
BaeGI	GKGCMC	1 cut(s)	655
BamHI	GGATCC	1 cut(s)	164
Bbv12I	GWGCWC	2 cut(s)	333, 655
BbvCI	CCTCAGC	1 cut(s)	632
BbvI	GCAGC	4 cut(s)	136, 277, 558, 561
BccI	CCATC	4 cut(s)	122, 176, 692, 747
BciT130I	CCWGG	2 cut(s)	273, 507
BcoDI	GTCTC	2 cut(s)	160, 600
BfaI	CTAG	2 cut(s)	513, 603
BfrI	CTTAAG	1 cut(s)	497
BisI	GCNGC	5 cut(s)	150, 291, 547, 575, 586
BlsI	GCNGC	5 cut(s)	151, 292, 548, 576, 587
BmcAI	AGTACT	2 cut(s)	714, 797
Bme1390I	CCNGG	2 cut(s)	273, 507
Bme18I	GGWCC	4 cut(s)	367, 502, 509, 693
BmgT120I	GGNCC	4 cut(s)	367, 502, 509, 693
BmiI	GGNNCC	4 cut(s)	166, 369, 504, 694
BmrFI	CCNGG	2 cut(s)	273, 507
BmsI	GCATC	2 cut(s)	59, 136
BoxI	GACNNNNGTC	1 cut(s)	507
Bpu10I	CCTNAGC	1 cut(s)	632
BpuEI	CTTGAG	1 cut(s)	381
BsaJI	CCNNGG	2 cut(s)	363, 505
BsaWI	WCCGGW	1 cut(s)	567
BsaXI	ACNNNNNCTCC	2 cut(s)	372, 402
Bsc4I	CCNNNNNNNGG	3 cut(s)	128, 377, 422
Bse1I	ACTGG	3 cut(s)	71, 166, 349
BseBI	CCWGG	2 cut(s)	273, 507
BseDI	CCNNGG	2 cut(s)	363, 505
BseGI	GGATG	4 cut(s)	70, 134, 472, 778
BseLI	CCNNNNNNNGG	3 cut(s)	128, 377, 422
BseMII	CTCAG	3 cut(s)	11, 623, 723
BseNI	ACTGG	3 cut(s)	71, 166, 349
BseSI	GKGCMC	1 cut(s)	655
BseXI	GCAGC	4 cut(s)	136, 277, 558, 561
Bsh1236I	CGCG	1 cut(s)	77
BsiHKAI	GWGCWC	2 cut(s)	333, 655
BsiSI	CCGG	3 cut(s)	96, 423, 568
BslFI	GGGAC	1 cut(s)	355
BslI	CCNNNNNNNGG	3 cut(s)	128, 377, 422
BsmAI	GTCTC	2 cut(s)	160, 600
BsmFI	GGGAC	1 cut(s)	355
BsmI	GAATGC	1 cut(s)	203
Bsp1286I	GDGCHC	2 cut(s)	333, 655
Bsp143I	GATC	6 cut(s)	23, 131, 164, 321, 493, 735
BspACI	CCGC	5 cut(s)	30, 77, 585, 684, 752
BspCNI	CTCAG	3 cut(s)	12, 624, 724
BspFNI	CGCG	1 cut(s)	77
BspLI	GGNNCC	4 cut(s)	166, 369, 504, 694
BspPI	GGATC	4 cut(s)	139, 159, 172, 730
BspQI	GCTCTTC	1 cut(s)	608
BspTI	CTTAAG	1 cut(s)	497
BsrI	ACTGG	3 cut(s)	71, 166, 349
BssECI	CCNNGG	2 cut(s)	363, 505
BssMI	GATC	6 cut(s)	23, 131, 164, 321, 493, 735
BssT1I	CCWWGG	1 cut(s)	363
Bst2UI	CCWGG	2 cut(s)	273, 507
Bst6I	CTCTTC	4 cut(s)	54, 78, 210, 608
BstAFI	CTTAAG	1 cut(s)	497
BstC8I	GCNNGC	4 cut(s)	269, 295, 521, 682
BstDEI	CTNAG	4 cut(s)	20, 632, 732, 799
BstEII	GGTNACC	1 cut(s)	596
BstF5I	GGATG	4 cut(s)	70, 134, 472, 778
BstFNI	CGCG	1 cut(s)	77
BstKTI	GATC	6 cut(s)	26, 134, 167, 324, 496, 738
BstMAI	GTCTC	2 cut(s)	160, 600
BstMBI	GATC	6 cut(s)	23, 131, 164, 321, 493, 735
BstNI	CCWGG	2 cut(s)	273, 507
BstNSI	RCATGY	1 cut(s)	307
BstPAI	GACNNNNGTC	1 cut(s)	507
BstPI	GGTNACC	1 cut(s)	596
BstSCI	CCNGG	2 cut(s)	271, 505
BstSLI	GKGCMC	1 cut(s)	655
BstUI	CGCG	1 cut(s)	77
BstV1I	GCAGC	4 cut(s)	136, 277, 558, 561
BstX2I	RGATCY	2 cut(s)	164, 735
BstYI	RGATCY	2 cut(s)	164, 735
BtsCI	GGATG	4 cut(s)	70, 134, 472, 778
BtsIMutI	CAGTG	1 cut(s)	159
Cac8I	GCNNGC	4 cut(s)	269, 295, 521, 682
Cfr13I	GGNCC	4 cut(s)	367, 502, 509, 693
CseI	GACGC	1 cut(s)	580
Csp6I	GTAC	5 cut(s)	376, 484, 538, 713, 796
CviAII	CATG	3 cut(s)	304, 373, 804
CviQI	GTAC	5 cut(s)	376, 484, 538, 713, 796
DdeI	CTNAG	4 cut(s)	20, 632, 732, 799
DpnI	GATC	6 cut(s)	25, 133, 166, 323, 495, 737
DpnII	GATC	6 cut(s)	23, 131, 164, 321, 493, 735
Eam1104I	CTCTTC	4 cut(s)	54, 78, 210, 608
EarI	CTCTTC	4 cut(s)	54, 78, 210, 608
Eco130I	CCWWGG	1 cut(s)	363
Eco47I	GGWCC	4 cut(s)	367, 502, 509, 693
Eco91I	GGTNACC	1 cut(s)	596
EcoO109I	RGGNCCY	2 cut(s)	502, 509
EcoO65I	GGTNACC	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	2 cut(s)	271, 505
EcoT14I	CCWWGG	1 cut(s)	363
ErhI	CCWWGG	1 cut(s)	363
FaeI	CATG	3 cut(s)	307, 376, 807
FaiI	YATR	9 cut(s)	47, 181, 305, 374, 582, 594, 645, 668, 805
FaqI	GGGAC	1 cut(s)	355
FatI	CATG	3 cut(s)	303, 372, 803
FauI	CCCGC	1 cut(s)	677
Fnu4HI	GCNGC	5 cut(s)	150, 291, 547, 575, 586
FokI	GGATG	4 cut(s)	77, 121, 479, 785
Fsp4HI	GCNGC	5 cut(s)	150, 291, 547, 575, 586
FspBI	CTAG	2 cut(s)	513, 603
GluI	GCNGC	5 cut(s)	150, 291, 547, 575, 586
HapII	CCGG	3 cut(s)	96, 423, 568
HgaI	GACGC	1 cut(s)	580
Hin1II	CATG	3 cut(s)	307, 376, 807
HinfI	GANTC	3 cut(s)	221, 394, 412
HpaII	CCGG	3 cut(s)	96, 423, 568
HphI	GGTGA	1 cut(s)	569
Hpy166II	GTNNAC	1 cut(s)	653
Hpy188I	TCNGA	6 cut(s)	55, 176, 411, 459, 697, 764
Hpy188III	TCNNGA	3 cut(s)	391, 398, 708
Hpy8I	GTNNAC	1 cut(s)	653
HpyAV	CCTTC	2 cut(s)	27, 440
HpyCH4IV	ACGT	1 cut(s)	745
HpyCH4V	TGCA	5 cut(s)	206, 303, 356, 533, 653
HpyF3I	CTNAG	4 cut(s)	20, 632, 732, 799
HpySE526I	ACGT	1 cut(s)	745
Hsp92II	CATG	3 cut(s)	307, 376, 807
Kzo9I	GATC	6 cut(s)	23, 131, 164, 321, 493, 735
LguI	GCTCTTC	1 cut(s)	608
Lsp1109I	GCAGC	4 cut(s)	136, 277, 558, 561
LweI	GCATC	2 cut(s)	59, 136
MaeI	CTAG	2 cut(s)	513, 603
MaeII	ACGT	1 cut(s)	745
MaeIII	GTNAC	2 cut(s)	557, 596
MalI	GATC	6 cut(s)	25, 133, 166, 323, 495, 737
MboI	GATC	6 cut(s)	23, 131, 164, 321, 493, 735
MboII	GAAGA	6 cut(s)	71, 95, 163, 227, 490, 625
MfeI	CAATTG	1 cut(s)	336
MflI	RGATCY	2 cut(s)	164, 735
MhlI	GDGCHC	2 cut(s)	333, 655
MluCI	AATT	5 cut(s)	13, 336, 383, 429, 785
MlyI	GAGTC	2 cut(s)	215, 388
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	5 cut(s)	49, 55, 211, 627, 769
MroXI	GAANNNNTTC	1 cut(s)	405
MseI	TTAA	1 cut(s)	498
MslI	CAYNNNNRTG	2 cut(s)	110, 744
MspCI	CTTAAG	1 cut(s)	497
MspI	CCGG	3 cut(s)	96, 423, 568
MspR9I	CCNGG	2 cut(s)	273, 507
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	203
MvaI	CCWGG	2 cut(s)	273, 507
MvnI	CGCG	1 cut(s)	77
NdeII	GATC	6 cut(s)	23, 131, 164, 321, 493, 735
NlaIII	CATG	3 cut(s)	307, 376, 807
NlaIV	GGNNCC	4 cut(s)	166, 369, 504, 694
NmuCI	GTSAC	1 cut(s)	557
NspI	RCATGY	1 cut(s)	307
PciSI	GCTCTTC	1 cut(s)	608
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PctI	GAATGC	1 cut(s)	203
PdmI	GAANNNNTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	412
PflMI	CCANNNNNTGG	1 cut(s)	128
PkrI	GCNGC	5 cut(s)	151, 292, 548, 576, 587
PleI	GAGTC	2 cut(s)	215, 388
PpsI	GAGTC	2 cut(s)	215, 388
PpuMI	RGGWCCY	2 cut(s)	502, 509
PshAI	GACNNNNGTC	1 cut(s)	507
Psp5II	RGGWCCY	2 cut(s)	502, 509
Psp6I	CCWGG	2 cut(s)	271, 505
PspEI	GGTNACC	1 cut(s)	596
PspGI	CCWGG	2 cut(s)	271, 505
PspN4I	GGNNCC	4 cut(s)	166, 369, 504, 694
PspPI	GGNCC	4 cut(s)	367, 502, 509, 693
PspPPI	RGGWCCY	2 cut(s)	502, 509
PsuI	RGATCY	2 cut(s)	164, 735
RsaI	GTAC	5 cut(s)	377, 485, 539, 714, 797
RsaNI	GTAC	5 cut(s)	376, 484, 538, 713, 796
RseI	CAYNNNNRTG	2 cut(s)	110, 744
SapI	GCTCTTC	1 cut(s)	608
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	5 cut(s)	150, 291, 547, 575, 586
Sau3AI	GATC	6 cut(s)	23, 131, 164, 321, 493, 735
Sau96I	GGNCC	4 cut(s)	367, 502, 509, 693
ScaI	AGTACT	2 cut(s)	714, 797
SchI	GAGTC	2 cut(s)	215, 388
ScrFI	CCNGG	2 cut(s)	273, 507
SduI	GDGCHC	2 cut(s)	333, 655
SfaNI	GCATC	2 cut(s)	59, 136
SinI	GGWCC	4 cut(s)	367, 502, 509, 693
SmiMI	CAYNNNNRTG	2 cut(s)	110, 744
SmlI	CTYRAG	2 cut(s)	396, 497
SmoI	CTYRAG	2 cut(s)	396, 497
Sse9I	AATT	5 cut(s)	13, 336, 383, 429, 785
SsiI	CCGC	5 cut(s)	30, 77, 585, 684, 752
SspMI	CTAG	2 cut(s)	513, 603
StyD4I	CCNGG	2 cut(s)	271, 505
StyI	CCWWGG	1 cut(s)	363
TaiI	ACGT	1 cut(s)	748
TasI	AATT	5 cut(s)	13, 336, 383, 429, 785
TatI	WGTACW	3 cut(s)	483, 712, 795
TauI	GCSGC	1 cut(s)	588
TfiI	GAWTC	1 cut(s)	412
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	4 cut(s)	149, 290, 546, 574
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	2 cut(s)	210, 459
TspGWI	ACGGA	1 cut(s)	393
TspRI	CASTG	1 cut(s)	166
Van91I	CCANNNNNTGG	1 cut(s)	128
Vha464I	CTTAAG	1 cut(s)	497
VneI	GTGCAC	1 cut(s)	651
VpaK11BI	GGWCC	4 cut(s)	367, 502, 509, 693
XapI	RAATTY	2 cut(s)	383, 429
XceI	RCATGY	1 cut(s)	307
XmnI	GAANNNNTTC	1 cut(s)	405
XspI	CTAG	2 cut(s)	513, 603
ZrmI	AGTACT	2 cut(s)	714, 797

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.