Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0010035

Physical Location & Seq

Genomic Coordinates Forward (+)

25508033 .. 25508839

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1164300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGCTGGAGCAGTTCTTCTGGGAATGCGAGAACGACCCGGATTACAGTCACGCCCCGGAAGTCGCGAAGATTCTGAACGAAGACCCGATTTTCGAAAAGGAGAACTCAACTGAGGAGGAGGTCCGGGAGAACGAGGGGTTTTGGAAGGAGTTCCGGGAGAGCCCCGTGATGAAGTTTCTGGCTCAGGCGGAGAAGATTGCAGATATGGTTAATGAGCTGGAGCTGAAGGAGAATGACCGGCCTTACAGGGATGAGGATAAGAAGCTGTGGCAGGCGGTGCCGCGTGTTATCGGGCCGGACGGGAGGCCGATGCCGAGGAAGGCGATAAAGACAGGCGGGAGTCGGATGACAAGTTCCGGGTTTAAAATTTCGTGTGGTTATTTCATCACTATGAGAATTGGCTACAAAGGTTTCAATTACAGTGAAATGCAGAATTGGCTACAAATGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339

Protein Analysis

151

Amino Acids

17.72

Weight (kDa)

4.92

Isoelectric Point (pI)

35.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01590
fragaria_vesca	FvH4_6g10790
malus_domestica	MD04G1164300.v1.1 MD12G1177900.v1.1
prunus_persica	Prupe.6G283400_v2.0.a1
pyrus_communis	pycom12g16830
rosa_chinensis	RchiOBHm_Chr3g0461841
rosa_laevigata	RLG00000024887 RLG00000024893
rosa_multiflora	Rmu_sc0004308.1_g000016 Rmu_sc0004308.1_g000019 Rmu_sc0007777.1_g000004 Rmu_sc0007777.1_g000014 Rmu_sc0007777.1_g000021
rosa_roxburghii	Rroxscaffold_6G00417870
rosa_rugosa	Rorug03G0054100 Rorug03G0054300
rosa_samantha	Rh3AG112200 Rh3CG117600 Rh3DG356900
rosa_wichuraiana	Rw3G009510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	277
AccII	CGCG	2 cut(s)	65, 283
AciI	CCGC	4 cut(s)	188, 275, 281, 336
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	415
AloI	GAACNNNNNNTCC	2 cut(s)	337, 369
AluBI	AGCT	3 cut(s)	217, 223, 265
AluI	AGCT	3 cut(s)	217, 223, 265
AoxI	GGCC	3 cut(s)	239, 293, 305
ApoI	RAATTY	1 cut(s)	366
ArsI	GACNNNNNNTTYG	2 cut(s)	74, 106
Asp700I	GAANNNNTTC	1 cut(s)	149
AspS9I	GGNCC	2 cut(s)	121, 293
AsuC2I	CCSGG	5 cut(s)	38, 56, 125, 155, 358
AsuII	TTCGAA	1 cut(s)	93
AvaII	GGWCC	1 cut(s)	121
BanI	GGYRCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	164
BbsI	GAAGAC	1 cut(s)	87
BcnI	CCSGG	5 cut(s)	38, 56, 125, 155, 358
BisI	GCNGC	1 cut(s)	281
BlsI	GCNGC	1 cut(s)	282
Bme1390I	CCNGG	5 cut(s)	38, 56, 125, 155, 358
Bme18I	GGWCC	1 cut(s)	121
BmgT120I	GGNCC	2 cut(s)	121, 293
BmiI	GGNNCC	1 cut(s)	279
BmrFI	CCNGG	5 cut(s)	38, 56, 125, 155, 358
BmsI	GCATC	1 cut(s)	300
BpiI	GAAGAC	1 cut(s)	87
BpmI	CTGGAG	2 cut(s)	26, 239
Bpu10I	CCTNAGC	1 cut(s)	183
Bpu14I	TTCGAA	1 cut(s)	93
BpuMI	CCSGG	5 cut(s)	38, 56, 125, 155, 358
BsaJI	CCNNGG	2 cut(s)	54, 314
Bse118I	RCCGGY	1 cut(s)	237
BseDI	CCNNGG	2 cut(s)	54, 314
BseGI	GGATG	2 cut(s)	256, 351
BseMII	CTCAG	2 cut(s)	102, 197
BseRI	GAGGAG	2 cut(s)	128, 131
Bsh1236I	CGCG	2 cut(s)	65, 283
BshFI	GGCC	3 cut(s)	241, 295, 307
BshNI	GGYRCC	1 cut(s)	277
BsiSI	CCGG	7 cut(s)	38, 56, 124, 154, 238, 296, 357
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	3 cut(s)	241, 295, 307
Bsp119I	TTCGAA	1 cut(s)	93
Bsp1286I	GDGCHC	1 cut(s)	164
Bsp68I	TCGCGA	1 cut(s)	65
BspACI	CCGC	4 cut(s)	188, 275, 281, 336
BspANI	GGCC	3 cut(s)	241, 295, 307
BspCNI	CTCAG	2 cut(s)	103, 196
BspFNI	CGCG	2 cut(s)	65, 283
BspLI	GGNNCC	1 cut(s)	279
BspT104I	TTCGAA	1 cut(s)	93
BspT107I	GGYRCC	1 cut(s)	277
BsrFI	RCCGGY	1 cut(s)	237
BssAI	RCCGGY	1 cut(s)	237
BssECI	CCNNGG	2 cut(s)	54, 314
Bst4CI	ACNGT	2 cut(s)	47, 422
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstBI	TTCGAA	1 cut(s)	93
BstC8I	GCNNGC	1 cut(s)	273
BstDEI	CTNAG	2 cut(s)	111, 183
BstF5I	GGATG	2 cut(s)	256, 351
BstFNI	CGCG	2 cut(s)	65, 283
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 436
BstSCI	CCNGG	5 cut(s)	36, 54, 123, 153, 356
BstUI	CGCG	2 cut(s)	65, 283
BstV2I	GAAGAC	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	241, 295, 307
BtsCI	GGATG	2 cut(s)	256, 351
BtsIMutI	CAGTG	1 cut(s)	427
BtuMI	TCGCGA	1 cut(s)	65
Cac8I	GCNNGC	1 cut(s)	273
Cfr10I	RCCGGY	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	121, 293
DdeI	CTNAG	2 cut(s)	111, 183
DraI	TTTAAA	1 cut(s)	364
EciI	GGCGGA	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	164
Eco47I	GGWCC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	245
EcoT38I	GRGCYC	1 cut(s)	164
FaiI	YATR	2 cut(s)	206, 392
FauI	CCCGC	1 cut(s)	329
Fnu4HI	GCNGC	1 cut(s)	281
FokI	GGATG	2 cut(s)	263, 358
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	1 cut(s)	281
GluI	GCNGC	1 cut(s)	281
GsuI	CTGGAG	2 cut(s)	26, 239
HaeIII	GGCC	3 cut(s)	241, 295, 307
HapII	CCGG	7 cut(s)	38, 56, 124, 154, 238, 296, 357
HinfI	GANTC	2 cut(s)	70, 340
HpaII	CCGG	7 cut(s)	38, 56, 124, 154, 238, 296, 357
Hpy188I	TCNGA	2 cut(s)	75, 345
Hpy188III	TCNNGA	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	139, 220, 313
HpyCH4III	ACNGT	2 cut(s)	47, 422
HpyCH4V	TGCA	2 cut(s)	200, 430
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 436
HpyF3I	CTNAG	2 cut(s)	111, 183
LmnI	GCTCC	2 cut(s)	7, 220
LweI	GCATC	1 cut(s)	300
MaeIII	GTNAC	1 cut(s)	47
MboII	GAAGA	4 cut(s)	7, 79, 92, 205
MhlI	GDGCHC	1 cut(s)	164
MluCI	AATT	4 cut(s)	366, 396, 415, 433
MlyI	GAGTC	1 cut(s)	349
MmeI	TCCRAC	1 cut(s)	323
MnlI	CCTC	7 cut(s)	106, 109, 112, 127, 247, 297, 309
MroXI	GAANNNNTTC	1 cut(s)	149
MseI	TTAA	3 cut(s)	210, 363, 451
MslI	CAYNNNNRTG	1 cut(s)	389
MspI	CCGG	7 cut(s)	38, 56, 124, 154, 238, 296, 357
MspR9I	CCNGG	5 cut(s)	38, 56, 125, 155, 358
Mva1269I	GAATGC	1 cut(s)	29
MvnI	CGCG	2 cut(s)	65, 283
MwoI	GCNNNNNNNGC	2 cut(s)	277, 436
NciI	CCSGG	5 cut(s)	38, 56, 125, 155, 358
NlaIV	GGNNCC	1 cut(s)	279
NmeAIII	GCCGAG	1 cut(s)	339
NmuCI	GTSAC	1 cut(s)	47
NruI	TCGCGA	1 cut(s)	65
NspV	TTCGAA	1 cut(s)	93
PctI	GAATGC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	149
PfeI	GAWTC	1 cut(s)	70
PfoI	TCCNGGA	2 cut(s)	123, 153
PkrI	GCNGC	1 cut(s)	282
PleI	GAGTC	1 cut(s)	348
PpsI	GAGTC	1 cut(s)	348
PspN4I	GGNNCC	1 cut(s)	279
PspPI	GGNCC	2 cut(s)	121, 293
RruI	TCGCGA	1 cut(s)	65
RseI	CAYNNNNRTG	1 cut(s)	389
SaqAI	TTAA	3 cut(s)	210, 363, 451
SatI	GCNGC	1 cut(s)	281
Sau96I	GGNCC	2 cut(s)	121, 293
SchI	GAGTC	1 cut(s)	349
ScrFI	CCNGG	5 cut(s)	38, 56, 125, 155, 358
SduI	GDGCHC	1 cut(s)	164
SetI	ASST	5 cut(s)	123, 219, 225, 267, 412
SfaNI	GCATC	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	93
SinI	GGWCC	1 cut(s)	121
SmiMI	CAYNNNNRTG	1 cut(s)	389
Sse9I	AATT	4 cut(s)	366, 396, 415, 433
SsiI	CCGC	4 cut(s)	188, 275, 281, 336
StyD4I	CCNGG	5 cut(s)	36, 54, 123, 153, 356
TaaI	ACNGT	2 cut(s)	47, 422
TaqI	TCGA	1 cut(s)	93
TasI	AATT	4 cut(s)	366, 396, 415, 433
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	1 cut(s)	70
Tru1I	TTAA	3 cut(s)	210, 363, 451
Tru9I	TTAA	3 cut(s)	210, 363, 451
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	47
Tsp45I	GTSAC	1 cut(s)	47
TspDTI	ATGAA	2 cut(s)	185, 373
TspRI	CASTG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	121
XapI	RAATTY	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.