Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007777.1

Orthogroup ID

OG0010035

Physical Location & Seq

Genomic Coordinates Reverse (-)

82492 .. 84201

Gene Structure 1710 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007777.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

atggcttccatcaacttcaacccttttgagggctggttccgaaaacccccaaacccactcccacccatcaacctcctctccctcgccgactcattctcccccaaaaccccaacccccaccccacaattcgcctccctcagcctctcaaaccccttcaaatcccccaaaaaacctgactcgaaatccgaacctgagccggagaagcccgggcactacacccagatgctggagcaaatcttctgggaatgcaggaacctacccgattacagacacactccagaagtggacaagattctagacttccacccgattctggagaagaaggaaaacccgactgaggaggagattagagagaacgagaagttctgggaggagtgtcgggccagcccggtaatcaagttcttgacccgggccgagcagattgctaataagatcaatgaaatggagctgaaggagaatgagaggccgtaccggagtgaggacaagaagctgtggcaggctgtgccgaatgttattgggtcgaacgggaggcccatgccgaggaaggcgatcaagacgaagaaggagtcaaatgataagttctgggattttgcaaggcagttcttttcgggctttgagggttccagcagaggccgtacccgccgggccggcccattgatgtggctcaagccattgggtacaagaggctggagaggagatactatgattgtccaagctgattctactgcaaaggatcagaggcggaaggctagaagagctgcagagaagcaagccgagctggaaaaagcctttggtggaattcgaactggtcctgaaaatgattcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339

Protein Analysis

275

Amino Acids

31.79

Weight (kDa)

9.37

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01590
fragaria_vesca	FvH4_6g10790
malus_domestica	MD04G1164300.v1.1 MD12G1177900.v1.1
prunus_persica	Prupe.6G283400_v2.0.a1
pyrus_communis	pycom12g16830
rosa_chinensis	RchiOBHm_Chr3g0461841
rosa_laevigata	RLG00000024887 RLG00000024893
rosa_multiflora	Rmu_sc0004308.1_g000016 Rmu_sc0004308.1_g000019 Rmu_sc0007777.1_g000004 Rmu_sc0007777.1_g000014 Rmu_sc0007777.1_g000021
rosa_roxburghii	Rroxscaffold_6G00417870
rosa_rugosa	Rorug03G0054100 Rorug03G0054300
rosa_samantha	Rh3AG112200 Rh3CG117600 Rh3DG356900
rosa_wichuraiana	Rw3G009510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AciI	CCGC	2 cut(s)	640, 742
AclWI	GGATC	1 cut(s)	741
AcsI	RAATTY	1 cut(s)	798
AcuI	CTGAAG	1 cut(s)	470
AfaI	GTAC	3 cut(s)	470, 637, 679
AfiI	CCNNNNNNNGG	7 cut(s)	28, 29, 226, 313, 337, 478, 540
AgsI	TTSAA	2 cut(s)	19, 157
AjuI	GAANNNNNNNTTGG	2 cut(s)	774, 806
AluBI	AGCT	5 cut(s)	448, 490, 716, 758, 778
AluI	AGCT	5 cut(s)	448, 490, 716, 758, 778
AlwI	GGATC	1 cut(s)	741
AlwNI	CAGNNNCTG	1 cut(s)	226
Ama87I	CYCGRG	2 cut(s)	206, 408
AoxI	GGCC	7 cut(s)	381, 411, 464, 530, 631, 645, 649
ApeKI	GCWGC	1 cut(s)	758
ApoI	RAATTY	1 cut(s)	798
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AspS9I	GGNCC	6 cut(s)	381, 411, 531, 645, 650, 809
AsuC2I	CCSGG	6 cut(s)	207, 208, 389, 409, 410, 644
AsuII	TTCGAA	1 cut(s)	802
AvaI	CYCGRG	2 cut(s)	206, 408
AvaII	GGWCC	1 cut(s)	809
BaeGI	GKGCMC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	745
BccI	CCATC	2 cut(s)	17, 74
BceAI	ACGGC	2 cut(s)	451, 618
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BcnI	CCSGG	6 cut(s)	207, 208, 389, 409, 410, 644
BfaI	CTAG	2 cut(s)	296, 750
BfmI	CTRYAG	1 cut(s)	759
BglI	GCCNNNNNGGC	1 cut(s)	648
BisI	GCNGC	1 cut(s)	759
BlsI	GCNGC	1 cut(s)	760
Bme1390I	CCNGG	6 cut(s)	207, 208, 389, 409, 410, 644
Bme18I	GGWCC	1 cut(s)	809
BmeT110I	CYCGRG	2 cut(s)	206, 408
BmgT120I	GGNCC	6 cut(s)	381, 411, 531, 645, 650, 809
BmiI	GGNNCC	3 cut(s)	38, 254, 622
BmrFI	CCNGG	6 cut(s)	207, 208, 389, 409, 410, 644
BmsI	GCATC	1 cut(s)	213
BpmI	CTGGAG	4 cut(s)	248, 261, 335, 709
Bpu10I	CCTNAGC	2 cut(s)	137, 192
Bpu14I	TTCGAA	1 cut(s)	802
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	6 cut(s)	207, 208, 389, 409, 410, 644
BsaJI	CCNNGG	3 cut(s)	206, 408, 539
BsaWI	WCCGGW	1 cut(s)	471
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 80, 92, 110
Bsc4I	CCNNNNNNNGG	7 cut(s)	28, 29, 226, 313, 337, 478, 540
Bse118I	RCCGGY	1 cut(s)	647
Bse1I	ACTGG	1 cut(s)	811
BseDI	CCNNGG	3 cut(s)	206, 408, 539
BseLI	CCNNNNNNNGG	7 cut(s)	28, 29, 226, 313, 337, 478, 540
BseMII	CTCAG	3 cut(s)	151, 183, 327
BseNI	ACTGG	1 cut(s)	811
BseRI	GAGGAG	5 cut(s)	65, 353, 356, 386, 708
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	745
BshFI	GGCC	7 cut(s)	383, 413, 466, 532, 633, 647, 651
BsiHKCI	CYCGRG	2 cut(s)	206, 408
BsiSI	CCGG	7 cut(s)	197, 207, 389, 409, 472, 643, 648
BslI	CCNNNNNNNGG	7 cut(s)	28, 29, 226, 313, 337, 478, 540
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	7 cut(s)	383, 413, 466, 532, 633, 647, 651
BsoBI	CYCGRG	2 cut(s)	206, 408
Bsp119I	TTCGAA	1 cut(s)	802
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	432, 549, 733
BspACI	CCGC	2 cut(s)	640, 742
BspANI	GGCC	7 cut(s)	383, 413, 466, 532, 633, 647, 651
BspCNI	CTCAG	3 cut(s)	150, 184, 328
BspLI	GGNNCC	3 cut(s)	38, 254, 622
BspMAI	CTGCAG	1 cut(s)	763
BspPI	GGATC	1 cut(s)	741
BspQI	GCTCTTC	1 cut(s)	748
BspT104I	TTCGAA	1 cut(s)	802
BsrFI	RCCGGY	1 cut(s)	647
BsrI	ACTGG	1 cut(s)	811
BssAI	RCCGGY	1 cut(s)	647
BssECI	CCNNGG	3 cut(s)	206, 408, 539
BssMI	GATC	3 cut(s)	432, 549, 733
Bst6I	CTCTTC	1 cut(s)	748
BstAPI	GCANNNNNTGC	1 cut(s)	502
BstBI	TTCGAA	1 cut(s)	802
BstC8I	GCNNGC	4 cut(s)	385, 498, 649, 771
BstDEI	CTNAG	3 cut(s)	137, 192, 336
BstKTI	GATC	3 cut(s)	435, 552, 736
BstMBI	GATC	3 cut(s)	432, 549, 733
BstMWI	GCNNNNNNNGC	6 cut(s)	202, 502, 639, 648, 755, 775
BstSCI	CCNGG	6 cut(s)	205, 206, 387, 407, 408, 642
BstSFI	CTRYAG	1 cut(s)	759
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	745
BstXI	CCANNNNNNTGG	1 cut(s)	660
BsuRI	GGCC	7 cut(s)	383, 413, 466, 532, 633, 647, 651
Cac8I	GCNNGC	4 cut(s)	385, 498, 649, 771
CaiI	CAGNNNCTG	1 cut(s)	226
Cfr10I	RCCGGY	1 cut(s)	647
Cfr13I	GGNCC	6 cut(s)	381, 411, 531, 645, 650, 809
Cfr9I	CCCGGG	2 cut(s)	206, 408
Csp6I	GTAC	3 cut(s)	469, 636, 678
CviAII	CATG	1 cut(s)	535
CviQI	GTAC	3 cut(s)	469, 636, 678
DdeI	CTNAG	3 cut(s)	137, 192, 336
DpnI	GATC	3 cut(s)	434, 551, 735
DpnII	GATC	3 cut(s)	432, 549, 733
Eam1104I	CTCTTC	1 cut(s)	748
EarI	CTCTTC	1 cut(s)	748
EciI	GGCGGA	1 cut(s)	757
Eco47I	GGWCC	1 cut(s)	809
Eco57I	CTGAAG	1 cut(s)	470
Eco88I	CYCGRG	2 cut(s)	206, 408
EcoRI	GAATTC	1 cut(s)	798
FaeI	CATG	1 cut(s)	538
FaiI	YATR	2 cut(s)	536, 704
FatI	CATG	1 cut(s)	534
FauI	CCCGC	1 cut(s)	647
Fnu4HI	GCNGC	1 cut(s)	759
FseI	GGCCGGCC	1 cut(s)	651
Fsp4HI	GCNGC	1 cut(s)	759
FspBI	CTAG	2 cut(s)	296, 750
GluI	GCNGC	1 cut(s)	759
GsuI	CTGGAG	4 cut(s)	248, 261, 335, 709
HaeIII	GGCC	7 cut(s)	383, 413, 466, 532, 633, 647, 651
HapII	CCGG	7 cut(s)	197, 207, 389, 409, 472, 643, 648
Hin1II	CATG	1 cut(s)	538
HinfI	GANTC	7 cut(s)	89, 176, 292, 310, 566, 719, 821
HpaII	CCGG	7 cut(s)	197, 207, 389, 409, 472, 643, 648
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	41, 187, 738
Hpy188III	TCNNGA	7 cut(s)	278, 296, 314, 403, 553, 812, 825
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	6 cut(s)	163, 316, 445, 538, 556, 739
HpyCH4V	TGCA	4 cut(s)	249, 593, 728, 761
HpyF10VI	GCNNNNNNNGC	6 cut(s)	202, 502, 639, 648, 755, 775
HpyF3I	CTNAG	3 cut(s)	137, 192, 336
Hsp92II	CATG	1 cut(s)	538
KroI	GCCGGC	1 cut(s)	647
KroNI	GCCGGC	1 cut(s)	649
Kzo9I	GATC	3 cut(s)	432, 549, 733
LguI	GCTCTTC	1 cut(s)	748
LmnI	GCTCC	2 cut(s)	229, 445
Lsp1109I	GCAGC	1 cut(s)	745
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	2 cut(s)	296, 750
MalI	GATC	3 cut(s)	434, 551, 735
MboI	GATC	3 cut(s)	432, 549, 733
MboII	GAAGA	4 cut(s)	229, 331, 571, 765
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	2 cut(s)	125, 798
MlyI	GAGTC	3 cut(s)	83, 170, 575
MroNI	GCCGGC	1 cut(s)	647
MslI	CAYNNNNRTG	2 cut(s)	221, 658
MspI	CCGG	7 cut(s)	197, 207, 389, 409, 472, 643, 648
MspR9I	CCNGG	6 cut(s)	207, 208, 389, 409, 410, 644
Mva1269I	GAATGC	1 cut(s)	251
MwoI	GCNNNNNNNGC	6 cut(s)	202, 502, 639, 648, 755, 775
NaeI	GCCGGC	1 cut(s)	649
NciI	CCSGG	6 cut(s)	207, 208, 389, 409, 410, 644
NdeII	GATC	3 cut(s)	432, 549, 733
NgoMIV	GCCGGC	1 cut(s)	647
NlaIII	CATG	1 cut(s)	538
NlaIV	GGNNCC	3 cut(s)	38, 254, 622
NmeAIII	GCCGAG	3 cut(s)	439, 564, 799
NspV	TTCGAA	1 cut(s)	802
PciSI	GCTCTTC	1 cut(s)	748
PctI	GAATGC	1 cut(s)	251
PdiI	GCCGGC	1 cut(s)	649
PfeI	GAWTC	4 cut(s)	292, 310, 719, 821
PflMI	CCANNNNNTGG	1 cut(s)	226
PkrI	GCNGC	1 cut(s)	760
PleI	GAGTC	3 cut(s)	83, 170, 574
PpsI	GAGTC	3 cut(s)	83, 170, 574
PspN4I	GGNNCC	3 cut(s)	38, 254, 622
PspPI	GGNCC	6 cut(s)	381, 411, 531, 645, 650, 809
PstI	CTGCAG	1 cut(s)	763
PstNI	CAGNNNCTG	1 cut(s)	226
RigI	GGCCGGCC	1 cut(s)	651
RsaI	GTAC	3 cut(s)	470, 637, 679
RsaNI	GTAC	3 cut(s)	469, 636, 678
RseI	CAYNNNNRTG	2 cut(s)	221, 658
SapI	GCTCTTC	1 cut(s)	748
SatI	GCNGC	1 cut(s)	759
Sau3AI	GATC	3 cut(s)	432, 549, 733
Sau96I	GGNCC	6 cut(s)	381, 411, 531, 645, 650, 809
SchI	GAGTC	3 cut(s)	83, 170, 575
ScrFI	CCNGG	6 cut(s)	207, 208, 389, 409, 410, 644
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	9 cut(s)	75, 175, 193, 258, 450, 492, 718, 760, 780
SfaNI	GCATC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	759
SfuI	TTCGAA	1 cut(s)	802
SinI	GGWCC	1 cut(s)	809
SmaI	CCCGGG	2 cut(s)	208, 410
SmiMI	CAYNNNNRTG	2 cut(s)	221, 658
SmlI	CTYRAG	1 cut(s)	665
SmoI	CTYRAG	1 cut(s)	665
SrfI	GCCCGGGC	1 cut(s)	208
Sse9I	AATT	2 cut(s)	125, 798
SsiI	CCGC	2 cut(s)	640, 742
SspMI	CTAG	2 cut(s)	296, 750
StyD4I	CCNGG	6 cut(s)	205, 206, 387, 407, 408, 642
TaqI	TCGA	3 cut(s)	179, 521, 802
TasI	AATT	2 cut(s)	125, 798
TfiI	GAWTC	4 cut(s)	292, 310, 719, 821
TseI	GCWGC	1 cut(s)	758
TspDTI	ATGAA	1 cut(s)	453
TspMI	CCCGGG	2 cut(s)	206, 408
Van91I	CCANNNNNTGG	1 cut(s)	226
VpaK11BI	GGWCC	1 cut(s)	809
XapI	RAATTY	1 cut(s)	798
XbaI	TCTAGA	1 cut(s)	295
XmaI	CCCGGG	2 cut(s)	206, 408
XspI	CTAG	2 cut(s)	296, 750

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.