Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0010035

Physical Location & Seq

Genomic Coordinates Forward (+)

40064400 .. 40066047

Gene Structure 1648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000024887

Sequence Viewer

CDS Protein Promoter (2k)

Length: 969 bp

ATGGCTTCCATCAACTTCAACCCTTTTGAGGGCTGGTTCCGAAAACCCCCAAACCCACTCCCACCCATCAACCTCCTCTCCCTCGCAGACTCATTCTTCCCCAAAACCCCAACCCCCACCCCACAATTCGCCTCCCTCAGCCTCTCAAACCCCTTCAAATCCCCCAAAAAACCCGACCCGAAATCCGAACCCGAGCCGGAGAAGCCCGGGCACTACACCCATATGCTGGAGCAGTTCTTCTGCGAATGCGAGAACCTACCAGATTACAGACACACTCCAGAAGTGGACAAGATTCTAGACTCCGACCCGATTCTGGAGAAGAAAGAAAACCCGACAGAGGAGGAGATTAGAGAGAACGAGAAGTTCTGGGAGGAGTTTCGGGCCAGCCCGGTAATCAAGTTCTTGACCCGGGCCGAGCAGATTGCCGATAAGATCAATGAAATGGAGCTGAAGGAGAACGACAAACCGTACAGGAGTGAAGATAAGAAGCTGTGGCAGGCTGTGCCGAATGTTATTGGGCCGGACGGGAGGCCTATGCCTAGGAAGGCGATTAAGACGAAGAAGGAGTATGATGACAAGTTCTGGGATTTTGCAAGGCAGTTCTTTTTCGGGCTTTGGGGGTTCCAGCAGAGGCCGTACCCGCCGGGTCGGCCCATTGATGTGGCTCAGGCCATTGGGTACAAGAGGCTGGAGAAGAGATACTATGATTCAATGGATCAGATAACTTATGAGGGAGAGTGGTATCGCAAACCTCTTGATACATACACGACTGGCCCTCCATACATTCGGGATTGGAATATGGATGTTCAGAGACTGTATAGGATCTATTTCAACCTAAGCACCCAAGTCTACCACAAATTGGAGGGAGCAATTCCTGCTTTCGATAAAGTAATGGAGAAGGTCCAAGCTGATTCTACTGCAACAGATCAGAGGTGGAAAGCTAAAATAGCTGCAGAGAAGCAAGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339

Protein Analysis

323

Amino Acids

37.99

Weight (kDa)

6.21

Isoelectric Point (pI)

37.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01590
fragaria_vesca	FvH4_6g10790
malus_domestica	MD04G1164300.v1.1 MD12G1177900.v1.1
prunus_persica	Prupe.6G283400_v2.0.a1
pyrus_communis	pycom12g16830
rosa_chinensis	RchiOBHm_Chr3g0461841
rosa_laevigata	RLG00000024887 RLG00000024893
rosa_multiflora	Rmu_sc0004308.1_g000016 Rmu_sc0004308.1_g000019 Rmu_sc0007777.1_g000004 Rmu_sc0007777.1_g000014 Rmu_sc0007777.1_g000021
rosa_roxburghii	Rroxscaffold_6G00417870
rosa_rugosa	Rorug03G0054100 Rorug03G0054300
rosa_samantha	Rh3AG112200 Rh3CG117600 Rh3DG356900
rosa_wichuraiana	Rw3G009510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	226, 859
AccI	GTMKAC	1 cut(s)	849
AciI	CCGC	1 cut(s)	641
AclWI	GGATC	2 cut(s)	723, 830
AcuI	CTGAAG	1 cut(s)	470
AfaI	GTAC	3 cut(s)	470, 638, 680
AfiI	CCNNNNNNNGG	6 cut(s)	28, 29, 226, 313, 337, 859
AgsI	TTSAA	4 cut(s)	19, 157, 711, 832
AluBI	AGCT	5 cut(s)	448, 490, 908, 941, 950
AluI	AGCT	5 cut(s)	448, 490, 908, 941, 950
Alw26I	GTCTC	1 cut(s)	805
AlwI	GGATC	2 cut(s)	723, 830
AlwNI	CAGNNNCTG	1 cut(s)	814
Ama87I	CYCGRG	3 cut(s)	191, 206, 408
AoxI	GGCC	8 cut(s)	381, 411, 518, 530, 632, 650, 669, 772
ApeKI	GCWGC	1 cut(s)	950
AspA2I	CCTAGG	1 cut(s)	539
AspS9I	GGNCC	6 cut(s)	381, 411, 518, 651, 773, 901
AsuC2I	CCSGG	6 cut(s)	207, 208, 389, 409, 410, 645
AvaI	CYCGRG	3 cut(s)	191, 206, 408
AvaII	GGWCC	1 cut(s)	901
AvrII	CCTAGG	1 cut(s)	539
BaeGI	GKGCMC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	137
BbvI	GCAGC	1 cut(s)	937
BccI	CCATC	2 cut(s)	17, 74
BceAI	ACGGC	1 cut(s)	619
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BcnI	CCSGG	6 cut(s)	207, 208, 389, 409, 410, 645
BcoDI	GTCTC	1 cut(s)	805
BfaI	CTAG	3 cut(s)	296, 540, 967
BfmI	CTRYAG	1 cut(s)	951
BglI	GCCNNNNNGGC	1 cut(s)	649
BisI	GCNGC	1 cut(s)	951
BlnI	CCTAGG	1 cut(s)	539
BlsI	GCNGC	1 cut(s)	952
Bme1390I	CCNGG	6 cut(s)	207, 208, 389, 409, 410, 645
Bme18I	GGWCC	1 cut(s)	901
BmeT110I	CYCGRG	3 cut(s)	191, 206, 408
BmgT120I	GGNCC	6 cut(s)	381, 411, 518, 651, 773, 901
BmiI	GGNNCC	2 cut(s)	38, 623
BmrFI	CCNGG	6 cut(s)	207, 208, 389, 409, 410, 645
BpmI	CTGGAG	4 cut(s)	248, 261, 335, 710
Bpu10I	CCTNAGC	3 cut(s)	137, 666, 836
BpuMI	CCSGG	6 cut(s)	207, 208, 389, 409, 410, 645
BsaJI	CCNNGG	3 cut(s)	206, 408, 539
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 760, 790
Bsc4I	CCNNNNNNNGG	6 cut(s)	28, 29, 226, 313, 337, 859
Bse1I	ACTGG	1 cut(s)	775
BseDI	CCNNGG	3 cut(s)	206, 408, 539
BseGI	GGATG	1 cut(s)	808
BseLI	CCNNNNNNNGG	6 cut(s)	28, 29, 226, 313, 337, 859
BseMII	CTCAG	2 cut(s)	151, 680
BseNI	ACTGG	1 cut(s)	775
BseRI	GAGGAG	4 cut(s)	65, 353, 356, 386
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	937
BshFI	GGCC	8 cut(s)	383, 413, 520, 532, 634, 652, 671, 774
BsiHKCI	CYCGRG	3 cut(s)	191, 206, 408
BsiSI	CCGG	6 cut(s)	197, 207, 389, 409, 521, 644
BslI	CCNNNNNNNGG	6 cut(s)	28, 29, 226, 313, 337, 859
BsmAI	GTCTC	1 cut(s)	805
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	8 cut(s)	383, 413, 520, 532, 634, 652, 671, 774
BsoBI	CYCGRG	3 cut(s)	191, 206, 408
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	4 cut(s)	432, 715, 822, 925
BspACI	CCGC	1 cut(s)	641
BspANI	GGCC	8 cut(s)	383, 413, 520, 532, 634, 652, 671, 774
BspCNI	CTCAG	2 cut(s)	150, 679
BspLI	GGNNCC	2 cut(s)	38, 623
BspMAI	CTGCAG	1 cut(s)	955
BspPI	GGATC	2 cut(s)	723, 830
BsrI	ACTGG	1 cut(s)	775
BssECI	CCNNGG	3 cut(s)	206, 408, 539
BssMI	GATC	4 cut(s)	432, 715, 822, 925
BssT1I	CCWWGG	1 cut(s)	539
Bst4CI	ACNGT	2 cut(s)	468, 816
Bst6I	CTCTTC	1 cut(s)	689
BstAPI	GCANNNNNTGC	2 cut(s)	502, 875
BstC8I	GCNNGC	3 cut(s)	385, 498, 963
BstDEI	CTNAG	3 cut(s)	137, 666, 836
BstF5I	GGATG	1 cut(s)	808
BstKTI	GATC	4 cut(s)	435, 718, 825, 928
BstMAI	GTCTC	1 cut(s)	805
BstMBI	GATC	4 cut(s)	432, 715, 822, 925
BstMWI	GCNNNNNNNGC	6 cut(s)	202, 502, 640, 649, 875, 947
BstSCI	CCNGG	6 cut(s)	205, 206, 387, 407, 408, 643
BstSFI	CTRYAG	1 cut(s)	951
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	1 cut(s)	937
BstX2I	RGATCY	1 cut(s)	822
BstXI	CCANNNNNNTGG	1 cut(s)	661
BstYI	RGATCY	1 cut(s)	822
BsuRI	GGCC	8 cut(s)	383, 413, 520, 532, 634, 652, 671, 774
BtsCI	GGATG	1 cut(s)	808
Cac8I	GCNNGC	3 cut(s)	385, 498, 963
CaiI	CAGNNNCTG	1 cut(s)	814
Cfr13I	GGNCC	6 cut(s)	381, 411, 518, 651, 773, 901
Cfr9I	CCCGGG	2 cut(s)	206, 408
Csp6I	GTAC	3 cut(s)	469, 637, 679
CviQI	GTAC	3 cut(s)	469, 637, 679
DdeI	CTNAG	3 cut(s)	137, 666, 836
DpnI	GATC	4 cut(s)	434, 717, 824, 927
DpnII	GATC	4 cut(s)	432, 715, 822, 925
Eam1104I	CTCTTC	1 cut(s)	689
EarI	CTCTTC	1 cut(s)	689
Eco130I	CCWWGG	1 cut(s)	539
Eco147I	AGGCCT	1 cut(s)	532
Eco47I	GGWCC	1 cut(s)	901
Eco57I	CTGAAG	1 cut(s)	470
Eco88I	CYCGRG	3 cut(s)	191, 206, 408
EcoT14I	CCWWGG	1 cut(s)	539
ErhI	CCWWGG	1 cut(s)	539
FauI	CCCGC	1 cut(s)	648
FauNDI	CATATG	1 cut(s)	222
FblI	GTMKAC	1 cut(s)	849
Fnu4HI	GCNGC	1 cut(s)	951
FokI	GGATG	1 cut(s)	815
Fsp4HI	GCNGC	1 cut(s)	951
FspBI	CTAG	3 cut(s)	296, 540, 967
GluI	GCNGC	1 cut(s)	951
GsuI	CTGGAG	4 cut(s)	248, 261, 335, 710
HaeIII	GGCC	8 cut(s)	383, 413, 520, 532, 634, 652, 671, 774
HapII	CCGG	6 cut(s)	197, 207, 389, 409, 521, 644
HinfI	GANTC	6 cut(s)	89, 292, 299, 310, 707, 911
HpaII	CCGG	6 cut(s)	197, 207, 389, 409, 521, 644
Hpy166II	GTNNAC	2 cut(s)	286, 850
Hpy188I	TCNGA	6 cut(s)	41, 187, 304, 720, 810, 930
Hpy188III	TCNNGA	6 cut(s)	278, 296, 314, 403, 755, 788
Hpy8I	GTNNAC	2 cut(s)	286, 850
HpyAV	CCTTC	5 cut(s)	163, 445, 538, 556, 892
HpyCH4III	ACNGT	2 cut(s)	468, 816
HpyCH4V	TGCA	3 cut(s)	593, 920, 953
HpyF10VI	GCNNNNNNNGC	6 cut(s)	202, 502, 640, 649, 875, 947
HpyF3I	CTNAG	3 cut(s)	137, 666, 836
Kzo9I	GATC	4 cut(s)	432, 715, 822, 925
LmnI	GCTCC	3 cut(s)	229, 445, 866
Lsp1109I	GCAGC	1 cut(s)	937
MaeI	CTAG	3 cut(s)	296, 540, 967
MalI	GATC	4 cut(s)	434, 717, 824, 927
MboI	GATC	4 cut(s)	432, 715, 822, 925
MboII	GAAGA	6 cut(s)	88, 229, 331, 491, 571, 706
MflI	RGATCY	1 cut(s)	822
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	3 cut(s)	125, 857, 870
MlyI	GAGTC	2 cut(s)	83, 293
MmeI	TCCRAC	1 cut(s)	327
MseI	TTAA	1 cut(s)	552
MslI	CAYNNNNRTG	2 cut(s)	221, 659
MspI	CCGG	6 cut(s)	197, 207, 389, 409, 521, 644
MspR9I	CCNGG	6 cut(s)	207, 208, 389, 409, 410, 645
Mva1269I	GAATGC	1 cut(s)	251
MwoI	GCNNNNNNNGC	6 cut(s)	202, 502, 640, 649, 875, 947
NciI	CCSGG	6 cut(s)	207, 208, 389, 409, 410, 645
NdeI	CATATG	1 cut(s)	222
NdeII	GATC	4 cut(s)	432, 715, 822, 925
NlaIV	GGNNCC	2 cut(s)	38, 623
NmeAIII	GCCGAG	1 cut(s)	439
PceI	AGGCCT	1 cut(s)	532
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	4 cut(s)	292, 310, 707, 911
PflMI	CCANNNNNTGG	2 cut(s)	226, 859
PkrI	GCNGC	1 cut(s)	952
PleI	GAGTC	2 cut(s)	83, 293
PpsI	GAGTC	2 cut(s)	83, 293
PspN4I	GGNNCC	2 cut(s)	38, 623
PspPI	GGNCC	6 cut(s)	381, 411, 518, 651, 773, 901
PstI	CTGCAG	1 cut(s)	955
PstNI	CAGNNNCTG	1 cut(s)	814
PsuI	RGATCY	1 cut(s)	822
RsaI	GTAC	3 cut(s)	470, 638, 680
RsaNI	GTAC	3 cut(s)	469, 637, 679
RseI	CAYNNNNRTG	2 cut(s)	221, 659
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	1 cut(s)	951
Sau3AI	GATC	4 cut(s)	432, 715, 822, 925
Sau96I	GGNCC	6 cut(s)	381, 411, 518, 651, 773, 901
SchI	GAGTC	2 cut(s)	83, 293
ScrFI	CCNGG	6 cut(s)	207, 208, 389, 409, 410, 645
SduI	GDGCHC	1 cut(s)	213
SfcI	CTRYAG	1 cut(s)	951
SinI	GGWCC	1 cut(s)	901
SmaI	CCCGGG	2 cut(s)	208, 410
SmiMI	CAYNNNNRTG	2 cut(s)	221, 659
SrfI	GCCCGGGC	1 cut(s)	208
Sse9I	AATT	3 cut(s)	125, 857, 870
SseBI	AGGCCT	1 cut(s)	532
SsiI	CCGC	1 cut(s)	641
SspMI	CTAG	3 cut(s)	296, 540, 967
StuI	AGGCCT	1 cut(s)	532
StyD4I	CCNGG	6 cut(s)	205, 206, 387, 407, 408, 643
StyI	CCWWGG	1 cut(s)	539
TaaI	ACNGT	2 cut(s)	468, 816
TaqI	TCGA	1 cut(s)	882
TasI	AATT	3 cut(s)	125, 857, 870
TfiI	GAWTC	4 cut(s)	292, 310, 707, 911
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TseI	GCWGC	1 cut(s)	950
TspDTI	ATGAA	1 cut(s)	453
TspMI	CCCGGG	2 cut(s)	206, 408
Van91I	CCANNNNNTGG	2 cut(s)	226, 859
VpaK11BI	GGWCC	1 cut(s)	901
XbaI	TCTAGA	1 cut(s)	295
XmaI	CCCGGG	2 cut(s)	206, 408
XmaJI	CCTAGG	1 cut(s)	539
XmiI	GTMKAC	1 cut(s)	849
XspI	CTAG	3 cut(s)	296, 540, 967

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.