Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0010035

Physical Location & Seq

Genomic Coordinates Forward (+)

43489371 .. 43490144

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG356900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCCCAGGCCTAATACAGAGGACAAGCTGGAAAGCAAGGAGAAAGAGATTGTGAACAGTTTTGAGATGGATTGTAAGGCAGGCTACAGCCCAGGCCCAATCAAAGGCCCAAATCAGACTGATCCTCCCCAGGTGCTTCTAGTCTCTCACTCTCAGTATCAGTCAAAACCCTGTCTCGACTTTCCTCCAATGGCTTCCATCAACTTCAACCCTTTTGAAGGCTGGTTCCGAAAACCCCCAAACCCACTCCCACCCATCAACCTCATCTCCCTCACCGACTCATTCTCCCCCAAAACCCCAAACCCCACCCCACAATTCGCCTCCCTCAGGCTCTCAAACCCCTTCAAATCCCCCAGAAAAACCGACCCGAAATCCGAACCGGAGCCGGAAAAACCCGGGCACTACACCCAGATGCTGGAGCAGTTCTTCTGGGAATGCGAGAACCTACCCGATTACAAACATACTCCGGAAGTGGACAAGATTATAGACTCCGACCCGATACTGGAGAAGAAAGAAAACCCGACTGAGGAGGAGATTAGAGAGAACGAGAAGTTCTGGGAGGAGTTTCGGGCCAGCCCGGTAATCATGTTCTTGACCCGGGCCGAGCAGATTGCCAATAAGATCAATGAAATGGAGCTGAAGGATAACGAGAGGCCGTACAGGAGTGAGGATGAGAAGCTGTGGCAGGCTGTGCCGAATGTTATTGGGCCGGACGGGAGGCCCATGCCGAGGAAGGTGATTAAGACGAAGAAGAAGTCTGATGATAAGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339

Protein Analysis

257

Amino Acids

29.8

Weight (kDa)

5.38

Isoelectric Point (pI)

48.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01590
fragaria_vesca	FvH4_6g10790
malus_domestica	MD04G1164300.v1.1 MD12G1177900.v1.1
prunus_persica	Prupe.6G283400_v2.0.a1
pyrus_communis	pycom12g16830
rosa_chinensis	RchiOBHm_Chr3g0461841
rosa_laevigata	RLG00000024887 RLG00000024893
rosa_multiflora	Rmu_sc0004308.1_g000016 Rmu_sc0004308.1_g000019 Rmu_sc0007777.1_g000004 Rmu_sc0007777.1_g000014 Rmu_sc0007777.1_g000021
rosa_roxburghii	Rroxscaffold_6G00417870
rosa_rugosa	Rorug03G0054100 Rorug03G0054300
rosa_samantha	Rh3AG112200 Rh3CG117600 Rh3DG356900
rosa_wichuraiana	Rw3G009510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	415
AccIII	TCCGGA	1 cut(s)	466
AclWI	GGATC	1 cut(s)	116
AcuI	CTGAAG	1 cut(s)	659
AfaI	GTAC	1 cut(s)	659
AfiI	CCNNNNNNNGG	7 cut(s)	104, 218, 327, 415, 502, 526, 729
AgsI	TTSAA	3 cut(s)	208, 218, 346
AjnI	CCWGG	3 cut(s)	5, 91, 129
AluBI	AGCT	3 cut(s)	28, 637, 679
AluI	AGCT	3 cut(s)	28, 637, 679
Alw26I	GTCTC	2 cut(s)	148, 179
AlwI	GGATC	1 cut(s)	116
AlwNI	CAGNNNCTG	1 cut(s)	415
Ama87I	CYCGRG	2 cut(s)	395, 597
Aor13HI	TCCGGA	1 cut(s)	466
AoxI	GGCC	8 cut(s)	8, 94, 106, 570, 600, 653, 707, 719
ArsI	GACNNNNNNTTYG	2 cut(s)	740, 772
AspS9I	GGNCC	6 cut(s)	95, 107, 570, 600, 707, 720
AsuC2I	CCSGG	5 cut(s)	396, 397, 578, 598, 599
AsuHPI	GGTGA	2 cut(s)	265, 748
AvaI	CYCGRG	2 cut(s)	395, 597
AxyI	CCTNAGG	1 cut(s)	326
BaeGI	GKGCMC	1 cut(s)	402
BccI	CCATC	3 cut(s)	61, 206, 263
BceAI	ACGGC	1 cut(s)	640
BcgI	CGANNNNNNTGC	2 cut(s)	593, 627
BciT130I	CCWGG	3 cut(s)	7, 93, 131
BcnI	CCSGG	5 cut(s)	396, 397, 578, 598, 599
BcoDI	GTCTC	2 cut(s)	148, 179
BfaI	CTAG	2 cut(s)	140, 772
BfmI	CTRYAG	1 cut(s)	85
Bme1390I	CCNGG	8 cut(s)	7, 93, 131, 396, 397, 578, 598, 599
BmeT110I	CYCGRG	2 cut(s)	395, 597
BmgT120I	GGNCC	6 cut(s)	95, 107, 570, 600, 707, 720
BmiI	GGNNCC	2 cut(s)	227, 384
BmrFI	CCNGG	8 cut(s)	7, 93, 131, 396, 397, 578, 598, 599
BmsI	GCATC	1 cut(s)	402
BpmI	CTGGAG	2 cut(s)	437, 524
BpuMI	CCSGG	5 cut(s)	396, 397, 578, 598, 599
BsaJI	CCNNGG	6 cut(s)	5, 91, 129, 395, 597, 728
BsaWI	WCCGGW	2 cut(s)	379, 466
BsaXI	ACNNNNNCTCC	6 cut(s)	109, 139, 251, 269, 281, 299
Bsc4I	CCNNNNNNNGG	7 cut(s)	104, 218, 327, 415, 502, 526, 729
Bse1I	ACTGG	1 cut(s)	507
Bse21I	CCTNAGG	1 cut(s)	326
BseAI	TCCGGA	1 cut(s)	466
BseBI	CCWGG	3 cut(s)	7, 93, 131
BseDI	CCNNGG	6 cut(s)	5, 91, 129, 395, 597, 728
BseGI	GGATG	1 cut(s)	676
BseLI	CCNNNNNNNGG	7 cut(s)	104, 218, 327, 415, 502, 526, 729
BseMII	CTCAG	3 cut(s)	167, 340, 516
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	3 cut(s)	542, 545, 575
BseSI	GKGCMC	1 cut(s)	402
BshFI	GGCC	8 cut(s)	10, 96, 108, 572, 602, 655, 709, 721
BsiHKCI	CYCGRG	2 cut(s)	395, 597
BsiSI	CCGG	7 cut(s)	380, 386, 396, 467, 578, 598, 710
BslI	CCNNNNNNNGG	7 cut(s)	104, 218, 327, 415, 502, 526, 729
BsmAI	GTCTC	2 cut(s)	148, 179
BsmI	GAATGC	1 cut(s)	440
BsnI	GGCC	8 cut(s)	10, 96, 108, 572, 602, 655, 709, 721
BsoBI	CYCGRG	2 cut(s)	395, 597
Bsp1286I	GDGCHC	1 cut(s)	402
Bsp13I	TCCGGA	1 cut(s)	466
Bsp143I	GATC	2 cut(s)	121, 621
BspANI	GGCC	8 cut(s)	10, 96, 108, 572, 602, 655, 709, 721
BspCNI	CTCAG	3 cut(s)	166, 339, 517
BspEI	TCCGGA	1 cut(s)	466
BspLI	GGNNCC	2 cut(s)	227, 384
BspPI	GGATC	1 cut(s)	116
BsrI	ACTGG	1 cut(s)	507
BssECI	CCNNGG	6 cut(s)	5, 91, 129, 395, 597, 728
BssMI	GATC	2 cut(s)	121, 621
Bst2UI	CCWGG	3 cut(s)	7, 93, 131
Bst4CI	ACNGT	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	691
BstC8I	GCNNGC	3 cut(s)	82, 574, 687
BstDEI	CTNAG	3 cut(s)	153, 326, 525
BstENI	CCTNNNNNAGG	2 cut(s)	216, 325
BstF5I	GGATG	1 cut(s)	676
BstKTI	GATC	2 cut(s)	124, 624
BstMAI	GTCTC	2 cut(s)	148, 179
BstMBI	GATC	2 cut(s)	121, 621
BstMWI	GCNNNNNNNGC	1 cut(s)	691
BstNI	CCWGG	3 cut(s)	7, 93, 131
BstSCI	CCNGG	8 cut(s)	5, 91, 129, 394, 395, 576, 596, 597
BstSFI	CTRYAG	1 cut(s)	85
BstSLI	GKGCMC	1 cut(s)	402
Bsu36I	CCTNAGG	1 cut(s)	326
BsuRI	GGCC	8 cut(s)	10, 96, 108, 572, 602, 655, 709, 721
BtsCI	GGATG	1 cut(s)	676
Cac8I	GCNNGC	3 cut(s)	82, 574, 687
CaiI	CAGNNNCTG	1 cut(s)	415
Cfr13I	GGNCC	6 cut(s)	95, 107, 570, 600, 707, 720
Cfr9I	CCCGGG	2 cut(s)	395, 597
Csp6I	GTAC	1 cut(s)	658
CviAII	CATG	2 cut(s)	586, 724
CviQI	GTAC	1 cut(s)	658
DdeI	CTNAG	3 cut(s)	153, 326, 525
DpnI	GATC	2 cut(s)	123, 623
DpnII	GATC	2 cut(s)	121, 621
Eco147I	AGGCCT	1 cut(s)	10
Eco57I	CTGAAG	1 cut(s)	659
Eco81I	CCTNAGG	1 cut(s)	326
Eco88I	CYCGRG	2 cut(s)	395, 597
EcoNI	CCTNNNNNAGG	2 cut(s)	216, 325
EcoRII	CCWGG	3 cut(s)	5, 91, 129
FaeI	CATG	2 cut(s)	589, 727
FaiI	YATR	4 cut(s)	462, 485, 587, 725
FatI	CATG	2 cut(s)	585, 723
FokI	GGATG	1 cut(s)	683
FspBI	CTAG	2 cut(s)	140, 772
GsuI	CTGGAG	2 cut(s)	437, 524
HaeIII	GGCC	8 cut(s)	10, 96, 108, 572, 602, 655, 709, 721
HapII	CCGG	7 cut(s)	380, 386, 396, 467, 578, 598, 710
Hin1II	CATG	2 cut(s)	589, 727
HinfI	GANTC	2 cut(s)	278, 488
HpaII	CCGG	7 cut(s)	380, 386, 396, 467, 578, 598, 710
HphI	GGTGA	2 cut(s)	265, 748
Hpy166II	GTNNAC	2 cut(s)	55, 475
Hpy188I	TCNGA	5 cut(s)	117, 230, 376, 493, 760
Hpy188III	TCNNGA	3 cut(s)	176, 467, 592
Hpy8I	GTNNAC	2 cut(s)	55, 475
HpyAV	CCTTC	4 cut(s)	212, 352, 634, 727
HpyCH4III	ACNGT	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	1 cut(s)	691
HpyF3I	CTNAG	3 cut(s)	153, 326, 525
Hsp92II	CATG	2 cut(s)	589, 727
Kpn2I	TCCGGA	1 cut(s)	466
Kzo9I	GATC	2 cut(s)	121, 621
LmnI	GCTCC	3 cut(s)	382, 418, 634
LweI	GCATC	1 cut(s)	402
MaeI	CTAG	2 cut(s)	140, 772
MalI	GATC	2 cut(s)	123, 623
MboI	GATC	2 cut(s)	121, 621
MboII	GAAGA	4 cut(s)	418, 520, 760, 763
MhlI	GDGCHC	1 cut(s)	402
MluCI	AATT	1 cut(s)	314
MlyI	GAGTC	2 cut(s)	272, 482
MmeI	TCCRAC	1 cut(s)	516
MroI	TCCGGA	1 cut(s)	466
MseI	TTAA	1 cut(s)	741
MslI	CAYNNNNRTG	1 cut(s)	410
MspI	CCGG	7 cut(s)	380, 386, 396, 467, 578, 598, 710
MspR9I	CCNGG	8 cut(s)	7, 93, 131, 396, 397, 578, 598, 599
Mva1269I	GAATGC	1 cut(s)	440
MvaI	CCWGG	3 cut(s)	7, 93, 131
MwoI	GCNNNNNNNGC	1 cut(s)	691
NciI	CCSGG	5 cut(s)	396, 397, 578, 598, 599
NdeII	GATC	2 cut(s)	121, 621
NlaIII	CATG	2 cut(s)	589, 727
NlaIV	GGNNCC	2 cut(s)	227, 384
NmeAIII	GCCGAG	2 cut(s)	628, 753
PceI	AGGCCT	1 cut(s)	10
PctI	GAATGC	1 cut(s)	440
PflMI	CCANNNNNTGG	1 cut(s)	415
PleI	GAGTC	2 cut(s)	272, 482
PpsI	GAGTC	2 cut(s)	272, 482
Psp6I	CCWGG	3 cut(s)	5, 91, 129
PspGI	CCWGG	3 cut(s)	5, 91, 129
PspN4I	GGNNCC	2 cut(s)	227, 384
PspPI	GGNCC	6 cut(s)	95, 107, 570, 600, 707, 720
PstNI	CAGNNNCTG	1 cut(s)	415
RsaI	GTAC	1 cut(s)	659
RsaNI	GTAC	1 cut(s)	658
RseI	CAYNNNNRTG	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	741
Sau3AI	GATC	2 cut(s)	121, 621
Sau96I	GGNCC	6 cut(s)	95, 107, 570, 600, 707, 720
SchI	GAGTC	2 cut(s)	272, 482
ScrFI	CCNGG	8 cut(s)	7, 93, 131, 396, 397, 578, 598, 599
SduI	GDGCHC	1 cut(s)	402
SetI	ASST	7 cut(s)	30, 135, 264, 447, 639, 681, 738
SfaNI	GCATC	1 cut(s)	402
SfcI	CTRYAG	1 cut(s)	85
SmaI	CCCGGG	2 cut(s)	397, 599
SmiMI	CAYNNNNRTG	1 cut(s)	410
Sse9I	AATT	1 cut(s)	314
SseBI	AGGCCT	1 cut(s)	10
SspMI	CTAG	2 cut(s)	140, 772
StuI	AGGCCT	1 cut(s)	10
StyD4I	CCNGG	8 cut(s)	5, 91, 129, 394, 395, 576, 596, 597
TaaI	ACNGT	1 cut(s)	59
TaqI	TCGA	1 cut(s)	177
TasI	AATT	1 cut(s)	314
Tru1I	TTAA	1 cut(s)	741
Tru9I	TTAA	1 cut(s)	741
TspDTI	ATGAA	1 cut(s)	642
TspMI	CCCGGG	2 cut(s)	395, 597
Van91I	CCANNNNNTGG	1 cut(s)	415
XagI	CCTNNNNNAGG	2 cut(s)	216, 325
XmaI	CCCGGG	2 cut(s)	395, 597
XspI	CTAG	2 cut(s)	140, 772

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.