Rorug03G0054300

Domain of unknown function (DUF4339)

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
Physical Location & Seq
Forward (+)
4192017 .. 4194260
2244 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0054300.1

Sequence Viewer

Length: 1545 bp
ATGGACTCTGAAGAGCTCATAAAAGGCAATGACATTTTGGAGCTCCTCAATGTGATTCAAGAGTTGAGGCTTTCTGTTGTTGTGCTTTCTGAAAACTATGCTTCTTCGAAGTGGTGCTTAAAAGAACTCGTCCAAATTCTGGATTGCATGGATAGGAAGAAGCAGATAGTGGTGCCCATTTTCTACCGAGTAAATCCCTCTGATATTCGGAGACTAAAGAGGAGCTTTTCAGACGCTTTTATCAAACATCAAGACGATCCTAACTCTGACTTTGAAGAGGTGAAAAGCTGGCAGTTCGCTCTAACAAGAACCTCCAATCTATTTGGCTGGGACTCACGAGATTACAGGGATGATGCTAAGCTTATTGAGGACATTGTAGAAGATATTTTTAATAAAATGATCCACATCTCATCAAGTAAAGCCAATGGATTGGTTGGGATCGAGTATCACACTGTTGAAATGGCTTTACTATTATCTCCTGAGCAAGCGGAAGATGTTCGCATTGTGGGAATATGGGGAATGGGCAGATTCCTGAAGCATGGTGCGGTACATATGCAGGAGGAACTTCTATCTAGAATCTTGAAGGAAAAGATGCGAAGTGTAGGCAGTTTGGATAGAGGTTCGAACATGATAATGGAAAGGCTGAGTAGGAAAATAGTTTTCCTTGTTCTTGATGATGTGGATGATTTATTCCAAATTGAAATTTTGCTTGGAAAGCAACATTCATTTGGTGGTGGAAGTAGGATCATTATAACAACTAGAGATTATGCCTTCAGAACAAACCAATACACAGAAGACTACTATGATCTGTCAAACCGTGCCATAGAGTATGCTCAAGGAATGAACAAAGACTATGCAACAGAAATTCTGGACAGTTGTGGCTTTTTTCCCATCAGTGGATTACGAGTTCTTGTTGATAGATCTCTTGTAACTATTTCAAATCACAATAAGCTCGACATGCATGATTTGCTGCAGGAAATGGGTTGGGAAATTGTCCGCCAAGAGTCTATTAAAGAGCCTGGTAGACGCAGTAGGTTGTGGAGTTATAAAGATATCGACTATATGTTAACTCAAAATATGGCTACGGAAGCAGTGGAAAGCATATGCCTTGATTTGCCGAACTCAAAAGAGGTATACTTAAATGCTGAAGCTTTTGTTAGAATGAAAAAATTAAGGCTGCTCAAAGTCCGTTACAACCTCTACATAGACTCTGACGAGGAAGTTCTTTCATGTGAGGATTTATGCCATCCAAGTGATGATTGTAAACAACAACTTACTGGGGACTTAAAGTGTCTTTCTCATGAGTTGAGGTGTCTCCTCTGGCAGAAATGCCCCCTAAGGTCTTTGCCATCCAATTTTCAACCGACGAATCTTGTTCACCTTGACATGCCTTATAGTCACATTCAGATACTCTGGGAAGGAGCAAAGTCTTTGAAAAACTTGAAATTTATCGATTTAAGTCACTCTCGCCACCTTGAGAAAATCCCTGACTTGACCAAGGCGACAAATCTGGAGGAACTAATTCTTGAAGGTTGTTTAAGTTGA

Protein Analysis

514

Amino Acids

59.59

Weight (kDa)

5.44

Isoelectric Point (pI)

56.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 2 - 146 4.4e-33 TIR domain
TIR_2 PF13676 2 - 69 7.9e-06 TIR domain
WHD_ROQ1 PF23282 284 - 336 4.8e-14 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 752, 1047
AccB1I GGYRCC 1 cut(s) 172
AccB7I CCANNNNNTGG 1 cut(s) 139
AccI GTMKAC 2 cut(s) 1024, 1134
AciI CCGC 3 cut(s) 488, 545, 997
AclWI GGATC 4 cut(s) 251, 394, 446, 752
AcsI RAATTY 4 cut(s) 135, 702, 864, 1445
AcuI CTGAAG 4 cut(s) 30, 554, 757, 1167
AfaI GTAC 1 cut(s) 549
AfiI CCNNNNNNNGG 2 cut(s) 139, 896
AjnI CCWGG 1 cut(s) 1018
AjuI GAANNNNNNNTTGG 2 cut(s) 693, 725
AloI GAACNNNNNNTCC 2 cut(s) 891, 923
AluBI AGCT 7 cut(s) 16, 43, 225, 288, 361, 952, 1151
AluI AGCT 7 cut(s) 16, 43, 225, 288, 361, 952, 1151
Alw21I GWGCWC 2 cut(s) 18, 45
Alw26I GTCTC 2 cut(s) 205, 1319
AlwI GGATC 4 cut(s) 251, 394, 446, 752
ApeKI GCWGC 2 cut(s) 970, 1177
ApoI RAATTY 4 cut(s) 135, 702, 864, 1445
Asp700I GAANNNNTTC 2 cut(s) 495, 1521
AsuHPI GGTGA 2 cut(s) 292, 1370
AsuII TTCGAA 2 cut(s) 107, 623
AxyI CCTNAGG 1 cut(s) 1337
BaeGI GKGCMC 1 cut(s) 177
BanI GGYRCC 1 cut(s) 172
BanII GRGCYC 2 cut(s) 18, 45
BauI CACGAG 1 cut(s) 336
BbsI GAAGAC 1 cut(s) 801
Bbv12I GWGCWC 2 cut(s) 18, 45
BbvI GCAGC 2 cut(s) 957, 1164
BccI CCATC 3 cut(s) 899, 1254, 1357
BciT130I CCWGG 1 cut(s) 1020
BcoDI GTCTC 2 cut(s) 205, 1319
BfaI CTAG 2 cut(s) 573, 759
BfmI CTRYAG 1 cut(s) 971
BglII AGATCT 1 cut(s) 920
BisI GCNGC 2 cut(s) 971, 1178
BlpI GCTNAGC 1 cut(s) 357
BlsI GCNGC 2 cut(s) 972, 1179
Bme1390I CCNGG 1 cut(s) 1020
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 1020
BmrI ACTGGG 1 cut(s) 1287
BmsI GCATC 2 cut(s) 343, 582
BmuI ACTGGG 1 cut(s) 1287
BpiI GAAGAC 1 cut(s) 801
BpmI CTGGAG 1 cut(s) 1532
Bpu10I CCTNAGC 1 cut(s) 480
Bpu1102I GCTNAGC 1 cut(s) 357
Bpu14I TTCGAA 2 cut(s) 107, 623
BpuEI CTTGAG 2 cut(s) 819, 1496
Bsa29I ATCGAT 1 cut(s) 1452
BsaBI GATNNNNATC 1 cut(s) 404
BsaJI CCNNGG 1 cut(s) 1497
Bsc4I CCNNNNNNNGG 2 cut(s) 139, 896
Bse1I ACTGG 1 cut(s) 1282
Bse21I CCTNAGG 1 cut(s) 1337
Bse3DI GCAATG 1 cut(s) 34
Bse8I GATNNNNATC 1 cut(s) 404
BseBI CCWGG 1 cut(s) 1020
BseCI ATCGAT 1 cut(s) 1452
BseDI CCNNGG 1 cut(s) 1497
BseGI GGATG 4 cut(s) 355, 688, 1246, 1349
BseJI GATNNNNATC 1 cut(s) 404
BseLI CCNNNNNNNGG 2 cut(s) 139, 896
BseMI GCAATG 1 cut(s) 34
BseMII CTCAG 2 cut(s) 471, 635
BseNI ACTGG 1 cut(s) 1282
BseRI GAGGAG 3 cut(s) 35, 235, 1307
BseSI GKGCMC 1 cut(s) 177
BseXI GCAGC 2 cut(s) 957, 1164
BseYI CCCAGC 1 cut(s) 327
BshNI GGYRCC 1 cut(s) 172
BshVI ATCGAT 1 cut(s) 1452
BsiHKAI GWGCWC 2 cut(s) 18, 45
BslFI GGGAC 2 cut(s) 344, 1295
BslI CCNNNNNNNGG 2 cut(s) 139, 896
BsmAI GTCTC 2 cut(s) 205, 1319
BsmFI GGGAC 2 cut(s) 344, 1295
Bsp119I TTCGAA 2 cut(s) 107, 623
Bsp1286I GDGCHC 3 cut(s) 18, 45, 177
Bsp143I GATC 6 cut(s) 256, 399, 438, 744, 805, 920
Bsp1720I GCTNAGC 1 cut(s) 357
BspACI CCGC 3 cut(s) 488, 545, 997
BspCNI CTCAG 2 cut(s) 472, 636
BspDI ATCGAT 1 cut(s) 1452
BspHI TCATGA 1 cut(s) 1300
BspLI GGNNCC 1 cut(s) 174
BspMAI CTGCAG 1 cut(s) 975
BspPI GGATC 4 cut(s) 251, 394, 446, 752
BspQI GCTCTTC 1 cut(s) 6
BspT104I TTCGAA 2 cut(s) 107, 623
BspT107I GGYRCC 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 34
BsrI ACTGG 1 cut(s) 1282
BssECI CCNNGG 1 cut(s) 1497
BssMI GATC 6 cut(s) 256, 399, 438, 744, 805, 920
BssNAI GTATAC 1 cut(s) 1135
BssSI CACGAG 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 1497
Bst1107I GTATAC 1 cut(s) 1135
Bst2BI CACGAG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 1020
Bst4CI ACNGT 3 cut(s) 454, 818, 875
Bst6I CTCTTC 2 cut(s) 6, 270
BstAPI GCANNNNNTGC 1 cut(s) 967
BstBI TTCGAA 2 cut(s) 107, 623
BstC8I GCNNGC 2 cut(s) 290, 486
BstDEI CTNAG 4 cut(s) 357, 480, 644, 1337
BstF5I GGATG 4 cut(s) 355, 688, 1246, 1349
BstKTI GATC 6 cut(s) 259, 402, 441, 747, 808, 923
BstMAI GTCTC 2 cut(s) 205, 1319
BstMBI GATC 6 cut(s) 256, 399, 438, 744, 805, 920
BstMWI GCNNNNNNNGC 4 cut(s) 715, 958, 967, 1088
BstNI CCWGG 1 cut(s) 1020
BstNSI RCATGY 2 cut(s) 961, 1390
BstSCI CCNGG 1 cut(s) 1018
BstSFI CTRYAG 1 cut(s) 971
BstSLI GKGCMC 1 cut(s) 177
BstV1I GCAGC 2 cut(s) 957, 1164
BstV2I GAAGAC 1 cut(s) 801
BstX2I RGATCY 1 cut(s) 920
BstXI CCANNNNNNTGG 1 cut(s) 430
BstYI RGATCY 1 cut(s) 920
BstZ17I GTATAC 1 cut(s) 1135
Bsu15I ATCGAT 1 cut(s) 1452
Bsu36I CCTNAGG 1 cut(s) 1337
BsuTUI ATCGAT 1 cut(s) 1452
BtsCI GGATG 4 cut(s) 355, 688, 1246, 1349
BtsI GCAGTG 1 cut(s) 1098
BtsIMutI CAGTG 3 cut(s) 450, 901, 1098
Cac8I GCNNGC 2 cut(s) 290, 486
CciI TCATGA 1 cut(s) 1300
ClaI ATCGAT 1 cut(s) 1452
CseI GACGC 2 cut(s) 242, 1035
Csp6I GTAC 1 cut(s) 548
CviAII CATG 8 cut(s) 148, 539, 628, 958, 962, 1230, 1301, 1387
CviQI GTAC 1 cut(s) 548
DdeI CTNAG 4 cut(s) 357, 480, 644, 1337
DpnI GATC 6 cut(s) 258, 401, 440, 746, 807, 922
DpnII GATC 6 cut(s) 256, 399, 438, 744, 805, 920
Eam1104I CTCTTC 2 cut(s) 6, 270
EarI CTCTTC 2 cut(s) 6, 270
EciI GGCGGA 1 cut(s) 986
Ecl136II GAGCTC 2 cut(s) 16, 43
Eco130I CCWWGG 1 cut(s) 1497
Eco24I GRGCYC 2 cut(s) 18, 45
Eco32I GATATC 1 cut(s) 1054
Eco53kI GAGCTC 2 cut(s) 16, 43
Eco57I CTGAAG 4 cut(s) 30, 554, 757, 1167
Eco81I CCTNAGG 1 cut(s) 1337
EcoICRI GAGCTC 2 cut(s) 16, 43
EcoRII CCWGG 1 cut(s) 1018
EcoRV GATATC 1 cut(s) 1054
EcoT14I CCWWGG 1 cut(s) 1497
EcoT22I ATGCAT 1 cut(s) 963
EcoT38I GRGCYC 2 cut(s) 18, 45
ErhI CCWWGG 1 cut(s) 1497
FaeI CATG 8 cut(s) 151, 542, 631, 961, 965, 1233, 1304, 1390
FalI AAGNNNNNCTT 4 cut(s) 101, 133, 209, 241
FaqI GGGAC 2 cut(s) 344, 1295
FatI CATG 8 cut(s) 147, 538, 627, 957, 961, 1229, 1300, 1386
FauNDI CATATG 2 cut(s) 552, 1103
FblI GTMKAC 2 cut(s) 1024, 1134
Fnu4HI GCNGC 2 cut(s) 971, 1178
FokI GGATG 4 cut(s) 362, 695, 1233, 1336
FriOI GRGCYC 2 cut(s) 18, 45
Fsp4HI GCNGC 2 cut(s) 971, 1178
FspBI CTAG 2 cut(s) 573, 759
GluI GCNGC 2 cut(s) 971, 1178
GsaI CCCAGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 1532
HgaI GACGC 2 cut(s) 242, 1035
Hin1II CATG 8 cut(s) 151, 542, 631, 961, 965, 1233, 1304, 1390
HincII GTYRAC 1 cut(s) 1068
HindII GTYRAC 1 cut(s) 1068
HindIII AAGCTT 2 cut(s) 359, 1149
HinfI GANTC 8 cut(s) 5, 55, 332, 528, 576, 1004, 1208, 1369
HpaI GTTAAC 1 cut(s) 1068
HphI GGTGA 2 cut(s) 292, 1370
Hpy166II GTNNAC 5 cut(s) 1025, 1068, 1135, 1265, 1378
Hpy188I TCNGA 9 cut(s) 10, 91, 202, 210, 232, 268, 776, 1213, 1407
Hpy8I GTNNAC 5 cut(s) 1025, 1068, 1135, 1265, 1378
Hpy99I CGWCG 1 cut(s) 1369
HpyAV CCTTC 4 cut(s) 577, 781, 1412, 1523
HpyCH4III ACNGT 3 cut(s) 454, 818, 875
HpyCH4V TGCA 5 cut(s) 147, 556, 857, 961, 973
HpyF10VI GCNNNNNNNGC 4 cut(s) 715, 958, 967, 1088
HpyF3I CTNAG 4 cut(s) 357, 480, 644, 1337
Hsp92II CATG 8 cut(s) 151, 542, 631, 961, 965, 1233, 1304, 1390
KspAI GTTAAC 1 cut(s) 1068
Kzo9I GATC 6 cut(s) 256, 399, 438, 744, 805, 920
LguI GCTCTTC 1 cut(s) 6
LmnI GCTCC 4 cut(s) 40, 48, 222, 1421
Lsp1109I GCAGC 2 cut(s) 957, 1164
LweI GCATC 2 cut(s) 343, 582
MaeI CTAG 2 cut(s) 573, 759
MaeIII GTNAC 4 cut(s) 928, 1190, 1397, 1460
MalI GATC 6 cut(s) 258, 401, 440, 746, 807, 922
MboI GATC 6 cut(s) 256, 399, 438, 744, 805, 920
MboII GAAGA 7 cut(s) 23, 96, 169, 287, 392, 503, 806
MflI RGATCY 1 cut(s) 920
MhlI GDGCHC 3 cut(s) 18, 45, 177
MluCI AATT 9 cut(s) 135, 696, 702, 864, 990, 1169, 1354, 1445, 1521
MlyI GAGTC 3 cut(s) 326, 1013, 1202
Mph1103I ATGCAT 1 cut(s) 963
MroXI GAANNNNTTC 2 cut(s) 495, 1521
MseI TTAA 9 cut(s) 119, 390, 1011, 1067, 1139, 1172, 1286, 1457, 1538
MslI CAYNNNNRTG 2 cut(s) 632, 1251
MspR9I CCNGG 1 cut(s) 1020
MvaI CCWGG 1 cut(s) 1020
MwoI GCNNNNNNNGC 4 cut(s) 715, 958, 967, 1088
NdeI CATATG 2 cut(s) 552, 1103
NdeII GATC 6 cut(s) 256, 399, 438, 744, 805, 920
NlaIII CATG 8 cut(s) 151, 542, 631, 961, 965, 1233, 1304, 1390
NlaIV GGNNCC 1 cut(s) 174
NmuCI GTSAC 2 cut(s) 1397, 1460
NsiI ATGCAT 1 cut(s) 963
NspI RCATGY 2 cut(s) 961, 1390
NspV TTCGAA 2 cut(s) 107, 623
PagI TCATGA 1 cut(s) 1300
PciSI GCTCTTC 1 cut(s) 6
PdmI GAANNNNTTC 2 cut(s) 495, 1521
PfeI GAWTC 4 cut(s) 55, 528, 576, 1369
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 2 cut(s) 972, 1179
PleI GAGTC 3 cut(s) 326, 1012, 1202
PpsI GAGTC 3 cut(s) 326, 1012, 1202
PsiI TTATAA 2 cut(s) 752, 1047
Psp124BI GAGCTC 2 cut(s) 18, 45
Psp6I CCWGG 1 cut(s) 1018
PspFI CCCAGC 1 cut(s) 327
PspGI CCWGG 1 cut(s) 1018
PspN4I GGNNCC 1 cut(s) 174
PstI CTGCAG 1 cut(s) 975
PsuI RGATCY 1 cut(s) 920
RsaI GTAC 1 cut(s) 549
RsaNI GTAC 1 cut(s) 548
RseI CAYNNNNRTG 2 cut(s) 632, 1251
SacI GAGCTC 2 cut(s) 18, 45
SapI GCTCTTC 1 cut(s) 6
SaqAI TTAA 9 cut(s) 119, 390, 1011, 1067, 1139, 1172, 1286, 1457, 1538
SatI GCNGC 2 cut(s) 971, 1178
Sau3AI GATC 6 cut(s) 256, 399, 438, 744, 805, 920
SchI GAGTC 3 cut(s) 326, 1013, 1202
ScrFI CCNGG 1 cut(s) 1020
SduI GDGCHC 3 cut(s) 18, 45, 177
SfaNI GCATC 2 cut(s) 343, 582
SfcI CTRYAG 1 cut(s) 971
SfuI TTCGAA 2 cut(s) 107, 623
SmiMI CAYNNNNRTG 2 cut(s) 632, 1251
SmlI CTYRAG 2 cut(s) 834, 1475
SmoI CTYRAG 2 cut(s) 834, 1475
Sse9I AATT 9 cut(s) 135, 696, 702, 864, 990, 1169, 1354, 1445, 1521
SsiI CCGC 3 cut(s) 488, 545, 997
SspMI CTAG 2 cut(s) 573, 759
SstI GAGCTC 2 cut(s) 18, 45
StyD4I CCNGG 1 cut(s) 1018
StyI CCWWGG 1 cut(s) 1497
TaaI ACNGT 3 cut(s) 454, 818, 875
TaqI TCGA 6 cut(s) 107, 441, 623, 954, 1056, 1452
TasI AATT 9 cut(s) 135, 696, 702, 864, 990, 1169, 1354, 1445, 1521
TfiI GAWTC 4 cut(s) 55, 528, 576, 1369
Tru1I TTAA 9 cut(s) 119, 390, 1011, 1067, 1139, 1172, 1286, 1457, 1538
Tru9I TTAA 9 cut(s) 119, 390, 1011, 1067, 1139, 1172, 1286, 1457, 1538
TscAI CASTG 3 cut(s) 457, 901, 1098
TseFI GTSAC 2 cut(s) 1397, 1460
TseI GCWGC 2 cut(s) 970, 1177
Tsp45I GTSAC 2 cut(s) 1397, 1460
TspDTI ATGAA 4 cut(s) 714, 857, 1178, 1218
TspGWI ACGGA 2 cut(s) 1100, 1178
TspRI CASTG 3 cut(s) 457, 901, 1098
Van91I CCANNNNNTGG 1 cut(s) 139
XapI RAATTY 4 cut(s) 135, 702, 864, 1445
XbaI TCTAGA 1 cut(s) 572
XceI RCATGY 2 cut(s) 961, 1390
XmiI GTMKAC 2 cut(s) 1024, 1134
XmnI GAANNNNTTC 2 cut(s) 495, 1521
XspI CTAG 2 cut(s) 573, 759
Zsp2I ATGCAT 1 cut(s) 963
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.