Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004308.1

Orthogroup ID

OG0010035

Physical Location & Seq

Genomic Coordinates Reverse (-)

80844 .. 81569

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004308.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

atggcttccatcaacttcaacccttttgaaggctggttccgaaaacccccaaacccactcccacccatcaacctcctctctctcaccggctcattctcccccaaaaccccaacccccaccccccaattcgcctccctcagcctctcaaaccccttcaaatcccccaaaaaacccgacccgaaatcagaacccgagccggagaagcccgggcactacacccagatgctggagcagttcttctgggaatgcgagaacctacccgattacggacacactccggaagtggacaagattctagattccgacccgattctggagaagaaagaaaacccgaccgaggaggagattagagagaacgagaaattctgggaggagtttcgggccagcccggtaatcaagttcttgacccgggccgagcagattgccgataaggtcaatgagatggagctgaaggagaacaaaaggccgtacaggagtgaggacgagaagctgtggcaggctgtgccgaatgttattgggccggacgggaggcccatgccgaggaaggcgatcaagacgaagaatgagtcaaatgataagttctgggattttgcaaggcagttctttttcgggctttgggggttccaacagaggccgtacccgccaggccggcccattgatgtgactcaggctattgggtacaagaggctggagaggagatactatgattgtaagttttcgcgatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339

Protein Analysis

241

Amino Acids

28.33

Weight (kDa)

6.79

Isoelectric Point (pI)

50.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01590
fragaria_vesca	FvH4_6g10790
malus_domestica	MD04G1164300.v1.1 MD12G1177900.v1.1
prunus_persica	Prupe.6G283400_v2.0.a1
pyrus_communis	pycom12g16830
rosa_chinensis	RchiOBHm_Chr3g0461841
rosa_laevigata	RLG00000024887 RLG00000024893
rosa_multiflora	Rmu_sc0004308.1_g000016 Rmu_sc0004308.1_g000019 Rmu_sc0007777.1_g000004 Rmu_sc0007777.1_g000014 Rmu_sc0007777.1_g000021
rosa_roxburghii	Rroxscaffold_6G00417870
rosa_rugosa	Rorug03G0054100 Rorug03G0054300
rosa_samantha	Rh3AG112200 Rh3CG117600 Rh3DG356900
rosa_wichuraiana	Rw3G009510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccII	CGCG	1 cut(s)	721
AccIII	TCCGGA	1 cut(s)	277
AciI	CCGC	1 cut(s)	641
AcsI	RAATTY	1 cut(s)	362
AcuI	CTGAAG	1 cut(s)	470
AfaI	GTAC	3 cut(s)	470, 638, 680
AfiI	CCNNNNNNNGG	6 cut(s)	29, 226, 266, 313, 337, 540
AgsI	TTSAA	3 cut(s)	19, 29, 157
AjnI	CCWGG	1 cut(s)	643
AluBI	AGCT	2 cut(s)	448, 490
AluI	AGCT	2 cut(s)	448, 490
AlwNI	CAGNNNCTG	1 cut(s)	226
Ama87I	CYCGRG	3 cut(s)	191, 206, 408
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	8 cut(s)	381, 411, 464, 518, 530, 632, 646, 650
ApoI	RAATTY	1 cut(s)	362
ArsI	GACNNNNNNTTYG	2 cut(s)	551, 583
AspS9I	GGNCC	5 cut(s)	381, 411, 518, 531, 651
AsuC2I	CCSGG	5 cut(s)	207, 208, 389, 409, 410
AsuHPI	GGTGA	1 cut(s)	76
AvaI	CYCGRG	3 cut(s)	191, 206, 408
BaeGI	GKGCMC	1 cut(s)	213
BbvCI	CCTCAGC	1 cut(s)	137
BccI	CCATC	3 cut(s)	17, 74, 436
BceAI	ACGGC	2 cut(s)	451, 619
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	1 cut(s)	645
BcnI	CCSGG	5 cut(s)	207, 208, 389, 409, 410
BfaI	CTAG	1 cut(s)	296
BglI	GCCNNNNNGGC	1 cut(s)	649
Bme1390I	CCNGG	6 cut(s)	207, 208, 389, 409, 410, 645
BmeT110I	CYCGRG	3 cut(s)	191, 206, 408
BmgT120I	GGNCC	5 cut(s)	381, 411, 518, 531, 651
BmiI	GGNNCC	2 cut(s)	38, 623
BmrFI	CCNGG	6 cut(s)	207, 208, 389, 409, 410, 645
BmsI	GCATC	1 cut(s)	213
BpmI	CTGGAG	3 cut(s)	248, 335, 710
Bpu10I	CCTNAGC	1 cut(s)	137
BpuMI	CCSGG	5 cut(s)	207, 208, 389, 409, 410
BsaJI	CCNNGG	4 cut(s)	206, 336, 408, 539
BsaWI	WCCGGW	1 cut(s)	277
Bsc4I	CCNNNNNNNGG	6 cut(s)	29, 226, 266, 313, 337, 540
Bse118I	RCCGGY	2 cut(s)	86, 648
BseAI	TCCGGA	1 cut(s)	277
BseBI	CCWGG	1 cut(s)	645
BseDI	CCNNGG	4 cut(s)	206, 336, 408, 539
BseLI	CCNNNNNNNGG	6 cut(s)	29, 226, 266, 313, 337, 540
BseMII	CTCAG	2 cut(s)	151, 680
BseRI	GAGGAG	5 cut(s)	65, 353, 356, 386, 709
BseSI	GKGCMC	1 cut(s)	213
Bsh1236I	CGCG	1 cut(s)	721
Bsh1285I	CGRYCG	1 cut(s)	336
BshFI	GGCC	8 cut(s)	383, 413, 466, 520, 532, 634, 648, 652
BsiEI	CGRYCG	1 cut(s)	336
BsiHKCI	CYCGRG	3 cut(s)	191, 206, 408
BsiSI	CCGG	8 cut(s)	87, 197, 207, 278, 389, 409, 521, 649
BslI	CCNNNNNNNGG	6 cut(s)	29, 226, 266, 313, 337, 540
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	8 cut(s)	383, 413, 466, 520, 532, 634, 648, 652
BsoBI	CYCGRG	3 cut(s)	191, 206, 408
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp13I	TCCGGA	1 cut(s)	277
Bsp143I	GATC	1 cut(s)	549
Bsp68I	TCGCGA	1 cut(s)	721
BspACI	CCGC	1 cut(s)	641
BspANI	GGCC	8 cut(s)	383, 413, 466, 520, 532, 634, 648, 652
BspCNI	CTCAG	2 cut(s)	150, 679
BspEI	TCCGGA	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	721
BspLI	GGNNCC	2 cut(s)	38, 623
BsrFI	RCCGGY	2 cut(s)	86, 648
BssAI	RCCGGY	2 cut(s)	86, 648
BssECI	CCNNGG	4 cut(s)	206, 336, 408, 539
BssMI	GATC	1 cut(s)	549
Bst2UI	CCWGG	1 cut(s)	645
BstAPI	GCANNNNNTGC	1 cut(s)	502
BstC8I	GCNNGC	3 cut(s)	385, 498, 650
BstDEI	CTNAG	2 cut(s)	137, 666
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstFNI	CGCG	1 cut(s)	721
BstKTI	GATC	1 cut(s)	552
BstMBI	GATC	1 cut(s)	549
BstMCI	CGRYCG	1 cut(s)	336
BstMWI	GCNNNNNNNGC	4 cut(s)	202, 502, 640, 649
BstNI	CCWGG	1 cut(s)	645
BstSCI	CCNGG	6 cut(s)	205, 206, 387, 407, 408, 643
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	721
BsuRI	GGCC	8 cut(s)	383, 413, 466, 520, 532, 634, 648, 652
BtuMI	TCGCGA	1 cut(s)	721
Cac8I	GCNNGC	3 cut(s)	385, 498, 650
CaiI	CAGNNNCTG	1 cut(s)	226
Cfr10I	RCCGGY	2 cut(s)	86, 648
Cfr13I	GGNCC	5 cut(s)	381, 411, 518, 531, 651
Cfr9I	CCCGGG	2 cut(s)	206, 408
Csp6I	GTAC	3 cut(s)	469, 637, 679
CviAII	CATG	1 cut(s)	535
CviQI	GTAC	3 cut(s)	469, 637, 679
DdeI	CTNAG	2 cut(s)	137, 666
DpnI	GATC	1 cut(s)	551
DpnII	GATC	1 cut(s)	549
Eco57I	CTGAAG	1 cut(s)	470
Eco88I	CYCGRG	3 cut(s)	191, 206, 408
EcoNI	CCTNNNNNAGG	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	643
FaeI	CATG	1 cut(s)	538
FaiI	YATR	2 cut(s)	536, 705
FatI	CATG	1 cut(s)	534
FauI	CCCGC	1 cut(s)	648
FseI	GGCCGGCC	1 cut(s)	652
FspBI	CTAG	1 cut(s)	296
GsuI	CTGGAG	3 cut(s)	248, 335, 710
HaeIII	GGCC	8 cut(s)	383, 413, 466, 520, 532, 634, 648, 652
HapII	CCGG	8 cut(s)	87, 197, 207, 278, 389, 409, 521, 649
Hin1II	CATG	1 cut(s)	538
HinfI	GANTC	5 cut(s)	292, 299, 310, 566, 664
HpaII	CCGG	8 cut(s)	87, 197, 207, 278, 389, 409, 521, 649
HphI	GGTGA	1 cut(s)	76
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	41, 187, 304
Hpy188III	TCNNGA	6 cut(s)	278, 296, 314, 403, 553, 720
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	4 cut(s)	23, 163, 445, 538
HpyCH4V	TGCA	1 cut(s)	593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	202, 502, 640, 649
HpyF3I	CTNAG	2 cut(s)	137, 666
Hsp92II	CATG	1 cut(s)	538
Kpn2I	TCCGGA	1 cut(s)	277
KroI	GCCGGC	1 cut(s)	648
KroNI	GCCGGC	1 cut(s)	650
Kzo9I	GATC	1 cut(s)	549
LmnI	GCTCC	2 cut(s)	229, 445
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	661
MalI	GATC	1 cut(s)	551
MboI	GATC	1 cut(s)	549
MboII	GAAGA	3 cut(s)	229, 331, 571
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	2 cut(s)	125, 362
MlyI	GAGTC	2 cut(s)	575, 658
MmeI	TCCRAC	2 cut(s)	327, 649
MroI	TCCGGA	1 cut(s)	277
MroNI	GCCGGC	1 cut(s)	648
MslI	CAYNNNNRTG	2 cut(s)	221, 659
MspI	CCGG	8 cut(s)	87, 197, 207, 278, 389, 409, 521, 649
MspR9I	CCNGG	6 cut(s)	207, 208, 389, 409, 410, 645
Mva1269I	GAATGC	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	645
MvnI	CGCG	1 cut(s)	721
MwoI	GCNNNNNNNGC	4 cut(s)	202, 502, 640, 649
NaeI	GCCGGC	1 cut(s)	650
NciI	CCSGG	5 cut(s)	207, 208, 389, 409, 410
NdeII	GATC	1 cut(s)	549
NgoMIV	GCCGGC	1 cut(s)	648
NlaIII	CATG	1 cut(s)	538
NlaIV	GGNNCC	2 cut(s)	38, 623
NmeAIII	GCCGAG	2 cut(s)	439, 564
NmuCI	GTSAC	1 cut(s)	661
NruI	TCGCGA	1 cut(s)	721
PctI	GAATGC	1 cut(s)	251
PdiI	GCCGGC	1 cut(s)	650
PfeI	GAWTC	3 cut(s)	292, 299, 310
PflMI	CCANNNNNTGG	1 cut(s)	226
PleI	GAGTC	2 cut(s)	574, 658
PpsI	GAGTC	2 cut(s)	574, 658
Psp6I	CCWGG	1 cut(s)	643
PspGI	CCWGG	1 cut(s)	643
PspN4I	GGNNCC	2 cut(s)	38, 623
PspPI	GGNCC	5 cut(s)	381, 411, 518, 531, 651
PstNI	CAGNNNCTG	1 cut(s)	226
RigI	GGCCGGCC	1 cut(s)	652
RruI	TCGCGA	1 cut(s)	721
RsaI	GTAC	3 cut(s)	470, 638, 680
RsaNI	GTAC	3 cut(s)	469, 637, 679
RseI	CAYNNNNRTG	2 cut(s)	221, 659
Sau3AI	GATC	1 cut(s)	549
Sau96I	GGNCC	5 cut(s)	381, 411, 518, 531, 651
SchI	GAGTC	2 cut(s)	575, 658
ScrFI	CCNGG	6 cut(s)	207, 208, 389, 409, 410, 645
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	5 cut(s)	75, 258, 435, 450, 492
SfaNI	GCATC	1 cut(s)	213
SmaI	CCCGGG	2 cut(s)	208, 410
SmiMI	CAYNNNNRTG	2 cut(s)	221, 659
SrfI	GCCCGGGC	1 cut(s)	208
Sse9I	AATT	2 cut(s)	125, 362
SsiI	CCGC	1 cut(s)	641
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	6 cut(s)	205, 206, 387, 407, 408, 643
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	2 cut(s)	125, 362
TfiI	GAWTC	3 cut(s)	292, 299, 310
TseFI	GTSAC	1 cut(s)	661
Tsp45I	GTSAC	1 cut(s)	661
TspGWI	ACGGA	1 cut(s)	282
TspMI	CCCGGG	2 cut(s)	206, 408
Van91I	CCANNNNNTGG	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	27
XapI	RAATTY	1 cut(s)	362
XbaI	TCTAGA	1 cut(s)	295
XmaI	CCCGGG	2 cut(s)	206, 408
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.