Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007777.1

Orthogroup ID

OG0010035

Physical Location & Seq

Genomic Coordinates Reverse (-)

98966 .. 99421

Gene Structure 456 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007777.1_g000021.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atggcttccatcaacttcaacccttttgaaggctggttccgaaaaccccccaacccactcccacccatcaacctcctctccctcgctgactcattctcccccaaaaccccaacccccaccccccaattcgcctccctcaacctctccaaccccttcaaatcccccaaacaacccgacccgaaatccgaacctgagccggagaagcccgggcactacacccagatgctggagcagttcttctgggaatgcgagaacctacccgattacagacacactccggaagtggacaagattctagactccgacccgattctggagaagaaagaaaacccgactgaggaggagattagagagaacgagaagttctgggaggagtttcaggccagcccggtaatcaagttcttgacccgggccgagcagattgcaaaacatagaattgagttgtactttcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008565 GO:0009507 GO:0009526 GO:0009528 GO:0009536 GO:0009706 GO:0009941 GO:0015031 GO:0015833 GO:0016020 GO:0017038 GO:0019866 GO:0031090 GO:0031967 GO:0031969 GO:0031975 GO:0033036 GO:0033365 GO:0034613 GO:0042170 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045036 GO:0045037 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0065002 GO:0070727 GO:0071702 GO:0071705 GO:0071806 GO:0072594 GO:0072596 GO:0072598

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4339

Protein Analysis

151

Amino Acids

17.72

Weight (kDa)

5.05

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010035)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G01590
fragaria_vesca	FvH4_6g10790
malus_domestica	MD04G1164300.v1.1 MD12G1177900.v1.1
prunus_persica	Prupe.6G283400_v2.0.a1
pyrus_communis	pycom12g16830
rosa_chinensis	RchiOBHm_Chr3g0461841
rosa_laevigata	RLG00000024887 RLG00000024893
rosa_multiflora	Rmu_sc0004308.1_g000016 Rmu_sc0004308.1_g000019 Rmu_sc0007777.1_g000004 Rmu_sc0007777.1_g000014 Rmu_sc0007777.1_g000021
rosa_roxburghii	Rroxscaffold_6G00417870
rosa_rugosa	Rorug03G0054100 Rorug03G0054300
rosa_samantha	Rh3AG112200 Rh3CG117600 Rh3DG356900
rosa_wichuraiana	Rw3G009510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	226
AccIII	TCCGGA	1 cut(s)	277
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	4 cut(s)	29, 226, 313, 337
AgsI	TTSAA	3 cut(s)	19, 29, 157
AlwNI	CAGNNNCTG	1 cut(s)	226
Ama87I	CYCGRG	2 cut(s)	206, 408
Aor13HI	TCCGGA	1 cut(s)	277
AoxI	GGCC	2 cut(s)	381, 411
AspS9I	GGNCC	1 cut(s)	411
AsuC2I	CCSGG	5 cut(s)	207, 208, 389, 409, 410
AvaI	CYCGRG	2 cut(s)	206, 408
BaeGI	GKGCMC	1 cut(s)	213
BccI	CCATC	2 cut(s)	17, 74
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BcnI	CCSGG	5 cut(s)	207, 208, 389, 409, 410
BfaI	CTAG	1 cut(s)	296
Bme1390I	CCNGG	5 cut(s)	207, 208, 389, 409, 410
BmeT110I	CYCGRG	2 cut(s)	206, 408
BmgT120I	GGNCC	1 cut(s)	411
BmiI	GGNNCC	1 cut(s)	38
BmrFI	CCNGG	5 cut(s)	207, 208, 389, 409, 410
BmsI	GCATC	1 cut(s)	213
BpmI	CTGGAG	2 cut(s)	248, 335
Bpu10I	CCTNAGC	1 cut(s)	192
BpuMI	CCSGG	5 cut(s)	207, 208, 389, 409, 410
BsaJI	CCNNGG	2 cut(s)	206, 408
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 80, 92, 110
Bsc4I	CCNNNNNNNGG	4 cut(s)	29, 226, 313, 337
BseAI	TCCGGA	1 cut(s)	277
BseDI	CCNNGG	2 cut(s)	206, 408
BseLI	CCNNNNNNNGG	4 cut(s)	29, 226, 313, 337
BseMII	CTCAG	2 cut(s)	183, 327
BseRI	GAGGAG	4 cut(s)	65, 353, 356, 386
BseSI	GKGCMC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	383, 413
BsiHKCI	CYCGRG	2 cut(s)	206, 408
BsiSI	CCGG	5 cut(s)	197, 207, 278, 389, 409
BslI	CCNNNNNNNGG	4 cut(s)	29, 226, 313, 337
BsmI	GAATGC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	383, 413
BsoBI	CYCGRG	2 cut(s)	206, 408
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp13I	TCCGGA	1 cut(s)	277
BspANI	GGCC	2 cut(s)	383, 413
BspCNI	CTCAG	2 cut(s)	184, 328
BspEI	TCCGGA	1 cut(s)	277
BspLI	GGNNCC	1 cut(s)	38
BssECI	CCNNGG	2 cut(s)	206, 408
BstC8I	GCNNGC	1 cut(s)	385
BstDEI	CTNAG	2 cut(s)	192, 336
BstENI	CCTNNNNNAGG	1 cut(s)	27
BstMWI	GCNNNNNNNGC	1 cut(s)	202
BstSCI	CCNGG	5 cut(s)	205, 206, 387, 407, 408
BstSLI	GKGCMC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	383, 413
Cac8I	GCNNGC	1 cut(s)	385
CaiI	CAGNNNCTG	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	411
Cfr9I	CCCGGG	2 cut(s)	206, 408
Csp6I	GTAC	1 cut(s)	445
CviJI	RGCY	7 cut(s)	5, 33, 196, 205, 383, 387, 413
CviKI_1	RGCY	7 cut(s)	5, 33, 196, 205, 383, 387, 413
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	2 cut(s)	192, 336
Eco88I	CYCGRG	2 cut(s)	206, 408
EcoNI	CCTNNNNNAGG	1 cut(s)	27
FaiI	YATR	1 cut(s)	432
FspBI	CTAG	1 cut(s)	296
GsuI	CTGGAG	2 cut(s)	248, 335
HaeIII	GGCC	2 cut(s)	383, 413
HapII	CCGG	5 cut(s)	197, 207, 278, 389, 409
HinfI	GANTC	4 cut(s)	89, 292, 299, 310
HpaII	CCGG	5 cut(s)	197, 207, 278, 389, 409
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	3 cut(s)	41, 187, 304
Hpy188III	TCNNGA	4 cut(s)	278, 296, 314, 403
Hpy8I	GTNNAC	1 cut(s)	286
HpyAV	CCTTC	2 cut(s)	23, 163
HpyCH4V	TGCA	1 cut(s)	425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	202
HpyF3I	CTNAG	2 cut(s)	192, 336
Kpn2I	TCCGGA	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	229
LweI	GCATC	1 cut(s)	213
MaeI	CTAG	1 cut(s)	296
MboII	GAAGA	2 cut(s)	229, 331
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	2 cut(s)	125, 435
MlyI	GAGTC	2 cut(s)	83, 293
MmeI	TCCRAC	2 cut(s)	171, 327
MnlI	CCTC	9 cut(s)	83, 86, 92, 142, 146, 152, 331, 334, 364
MroI	TCCGGA	1 cut(s)	277
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	5 cut(s)	197, 207, 278, 389, 409
MspR9I	CCNGG	5 cut(s)	207, 208, 389, 409, 410
Mva1269I	GAATGC	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	202
NciI	CCSGG	5 cut(s)	207, 208, 389, 409, 410
NlaIV	GGNNCC	1 cut(s)	38
NmeAIII	GCCGAG	1 cut(s)	439
PctI	GAATGC	1 cut(s)	251
PfeI	GAWTC	2 cut(s)	292, 310
PflMI	CCANNNNNTGG	1 cut(s)	226
PleI	GAGTC	2 cut(s)	83, 293
PpsI	GAGTC	2 cut(s)	83, 293
PspN4I	GGNNCC	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	411
PstNI	CAGNNNCTG	1 cut(s)	226
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	1 cut(s)	221
Sau96I	GGNCC	1 cut(s)	411
SchI	GAGTC	2 cut(s)	83, 293
ScrFI	CCNGG	5 cut(s)	207, 208, 389, 409, 410
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	4 cut(s)	75, 144, 193, 258
SfaNI	GCATC	1 cut(s)	213
SmaI	CCCGGG	2 cut(s)	208, 410
SmiMI	CAYNNNNRTG	1 cut(s)	221
SrfI	GCCCGGGC	1 cut(s)	208
Sse9I	AATT	2 cut(s)	125, 435
SspMI	CTAG	1 cut(s)	296
StyD4I	CCNGG	5 cut(s)	205, 206, 387, 407, 408
TasI	AATT	2 cut(s)	125, 435
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	2 cut(s)	292, 310
TspDTI	ATGAA	1 cut(s)	440
TspMI	CCCGGG	2 cut(s)	206, 408
Van91I	CCANNNNNTGG	1 cut(s)	226
XagI	CCTNNNNNAGG	1 cut(s)	27
XbaI	TCTAGA	1 cut(s)	295
XmaI	CCCGGG	2 cut(s)	206, 408
XspI	CTAG	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.