Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0012378

Physical Location & Seq

Genomic Coordinates Reverse (-)

29899610 .. 29907527

Gene Structure 7918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1216400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3624 bp

ATGGAAGAGAGCAGCAACAGCAACACAGCGGCTAGCAGGGTCGCCCAAGCCATTGCCGTAGCTCTCGACTGGAGCTCCACTCCCGACGCCCGCAAAGCAGCCGTTGCTTTCCTCGAATCGATTAAGACCGGAGATGTGCGGATTTTGGCAAACGCTGCGTTTCTTCTAGTGAAGAAGGATTGGTCTTCCGAAATTCGGTTGCATGCATTTAAGATGTTACAGCATTTGGTCCGATTGCGGTGGGAAGAACTAAGCCCTACAGAGCGTAGAAACTTTGCAAATATCACAGTCGATTTAATGTCTGATATTGCAAGTCCTAGTGAGGAGTGGGCTTTAAAAAGTCAGACAGCAGCCCTTACTGCCGAGATGGTTAGAAGGGAAGGACTAAATCTATGGCAAGAATTGTTTCCAACTTTGGTTTCATTATCCTCCAAGGGTCCTATTCAAGCTGAGTTGGTCTCCATGATGCTAAGGTGGCTTCCTGAAGATATTACTGTTCACAATGAAGACTTGGAAGGAGATCGGAGAAGGCTTTTGCTGCGTGGGCTGACCCAATCTTTACCTGAAATTTTGCCTTTATTATACACTTTACTAGAGAGGCACTTTGGAGCTGCATTGAGTGAAGCAGGAAAACAACAATTTGACCTTGCAAAACAACATGCTGCGACAGTAACAGCTACTTTGAATGCTGTTAATGCATATTCTGAATGGGCTCCATTGCCTGATCTTGCTAAATCTGGTATAATTCATGGCTGTTGGCAAGTGTGTGGTTTCTTACTTTCTTCACCTGACTTTCGTCTTCATGCTTGTGAGTTTTTCAAACTTGTTTCCCAAAGGAAGAGACCTATTGATGATACCTCTGCTCCCGAATTTGATTCTGCAATCAGTAATATCTTTCAAATATTGATGAATGTCTCCAAAGAATTTTTGTACATATCTAGCTCCGGTACTGGGGTAATTGATGAAAGCAATATTGAGTTTGTGGAATATATATGTGAAAGTATGGTGTCTTTGGGTTCCACAAACTTGCAATGTATTGCTGGTGATAGCATTGTGCTACCACTTTATGTACAACAGATGCTGGGGTTTTTCCAACATTTTAAGCTAGCTCTTCATTTTCAATCTCTCAACTTTTGGCTGGCGCTAATGAGAGACTTGATGTCAAAGCCAAAGGCTGTTGCTCACTCAGCTGGAGATGGTTCTGATCCGGTCGATTTTGAAAAGAGAAAAATCTTAAGTTTTTTGAATGATGAAATATGTAGTGCAATTCTGGATGTATCTTTCCAACACATGCTCAAGAGAGAAAAAGTAATTCACGGAACAACATTTTCTTTGGGGCAGTTGGAATTATGGAGTGATGATGTTGAGGACAAGGGGACTTTTGGCCAGTATCGTTCAAAGTTGTTAGAACTGATTAAATTGGTTGCCTTATACAAGCCTCTTATAGCCGGTTCTAAAGTTTCTGAAAGAATTGATACAATCATCAAAAGCCTCTTGCTTTCTCCAATGCCTGCTCAGGACTTAGCTGTGATGGAAAGCATGCAGTTGGCTTTAGAAAATGTTGTAAGCACTATTTTCGATGGATCAAATGAAATTGCCGGGGGTCATTCTGAAGTTCAACTTGGACTATGCAGAATATTTGAAGGTTTGCTTCAGCAACTTCTTTCTTTGAAATGGACTGAGCCAGCTCTTGTGGAAGTACTTGGGCACTACTTGGATGCAATGGGTTCATTTTTGAAGTATTTTCCGGATGCCGTGGGCAGTGTCATTAATAAATTATTTGAGCTCCTAAATTCGCTCCCTTTTGTTGTTAAGGATCCATCTACAAGTAGTGCACGGTATGCAAGGCTGCAAATCTGTACATCGTTTATTCGTATCGCCAAAACTGCTGACACAAGTGTTCTGCCTCACATGAAGGGTATAGCTGACACCATGGCGTATATGAAAAGAGAAGGTTCTTTACTTCGTGGTGAACACAATCTCTTAGGTGAAGCGTTTCTTGTCATGGCTTCTGCTGCTGGAATTCAGCAGCAGCAAGAAGTTCTGGCCTGGTTACTAGAACCTTTAAGCCAGCAATGGACGCAGATTGAGTGGCAAAATAATTATCTATCTGAACCACTTGGTCTTGTTCGCTTGTGCTCCGAGACCCCAGTTATGTGGTCAGTTTTCCACACTATCACATTCTTTGAGAAGGCACTTAAGAGAAGTGGAACCAGAAAAGCCCAGTCAAATCTACAACACAATTCAACAGAAAGTTCTATGCCCTTGCACCCAATGGCTTCTCATCTATCATGGATGCTGCCACCTCTTCCAAAACTGTTTCGTGTCTTACATTCCCTTTGGTCTCCGTCTGTATTCCAAATATTACCTGGAGAGATTAAAGCTGCAATGACCATGAGTGATGTTGAGAAATTCAGTCTTCTTGGTGAAGGAAACCCTAAATTGCTAAAGGGTACCATAGCCTTCGCCAATGGATCCCATATCAGCACAAGTAAGGAAGGATATGTGGAGTCAAATGAATCAGACATACGAAATTGGTTGAAAGGTATCAGAGACAGTGGGTACAATGTATTGGGCCTGGCAACCACTATTGGGGACTCATTTTACAAATGTCTGGATAGTCAATCTGTTGCTCTAGCTCTAGTGGAGAATATACATTCAATGGAATTCAGGCATATCCGGCTGCTTGTTCATTCAGTTTTGATTCCTTTGGTTAAATTTTGTCCTGTGGATTTGTGGGAGGCATGGTTGGAAAAGCTCTTGCCCCCATTATTTCAACACTCCCAACAGGCTCTCAGTTGCTCATGGTCCGGTCTTCTACATGAAGGGAGAGCAAAGGTCCCAGATGCCCATGCCATACTAGCTGGGTCGGACTTAAAAGTGGAAGTAATGGAAGAAAAGCTACTTAGGGATCTAACACGGGAGATTTGTTCACTCCTCTCTGTTATAGCTTCGCCGCAGCTAAATACTGGGCTTCCTTCCTTGGAGCACTCTGGGCATGTTCATCGTGTTGACGTATCTTCCCTCAAAGAATTGGATGCATTCGCATCAAGCTCCATGGTTGGTTTCCTTTTGAAGCACAAAGGCCTTGCCCTTCCAGCGCTGCAGATATGTTTAGAAGCTTTTACATGGACAGATGGTGAAGCCATGACAAAAGTTTCTGCCTTCTGTTCTTCTTTGATTGGTTTAGCGGTATCGACAAATAGTGTGGAGCTCCTACAATTTGTTTCTAAGGATCTATTTTCTGCAATTATCCAAGGTTTAGCCCTTGAGTCAAATGCTTTCATCAGTGCCGATTTGATTGGTCACTGTCGTGATATATACATACATCTTTGCGATAGAGATCCTACTCCTAGGCAGATTCTGCTCTCGCTCCCATGTATCAAACAACATGATTTGCTTGCGTTTGAAGAAGCTTTGACGAAGACATCCAGTCCCAAAGAACAAAAGCAACATATGAAAAGCTTGCTTGTCTTAGCTACTGGAAACAAGTTAAAGGCGCTCGCTGTTCAGAAAAGCGTCAATGTCATAACGAATGTATCAACGAGGCCTCGCAGCACGGCCAACACCAAAGAAACCAGAGCGGACGATGGAGAGACTGTTGGGCTGGCAGCCATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005049 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006810 GO:0006913 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009909 GO:0009910 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0010016 GO:0015931 GO:0022622 GO:0031074 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033157 GO:0042565 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046822 GO:0046825 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048580 GO:0048581 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0051049 GO:0051093 GO:0051168 GO:0051169 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051641 GO:0051649 GO:0060341 GO:0061716 GO:0065001 GO:0065007 GO:0070201 GO:0071702 GO:0071705 GO:0090087 GO:0097064 GO:0097159 GO:0099402 GO:0140104 GO:0140142 GO:1901363 GO:1903827 GO:1905392 GO:1990428 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Xpo1

Protein Analysis

1208

Amino Acids

133.84

Weight (kDa)

5.97

Isoelectric Point (pI)

43.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xpo1	PF08389	110 - 272	5e-25	Exportin 1-like protein
Exportin-5	PF19273	322 - 1172	0.0	Exportin-5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05040 AT3G05040
fragaria_vesca	FvH4_6g04110
malus_domestica	MD04G1216400.v1.1 MD12G1232900.v1.1
prunus_persica	Prupe.6G336100_v2.0.a1
pyrus_communis	pycom04g19230 pycom12g21520
rosa_chinensis	RchiOBHm_Chr3g0452661
rosa_multiflora	Rmu_co8350293.1_g000001 Rmu_sc0034779.1_g000001 Rmu_ssc0000156.1_g000010
rosa_roxburghii	Rroxscaffold_6G00429700
rosa_rugosa	Rorug02G0642500.1
rosa_samantha	Rh3AG044700 Rh3BG047000 Rh3CG045500 Rh3DG045900
rosa_wichuraiana	Rw3G003490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2453
AccB1I	GGYRCC	1 cut(s)	2453
AccBSI	CCGCTC	1 cut(s)	3584
AccIII	TCCGGA	1 cut(s)	1747
AciI	CCGC	7 cut(s)	29, 91, 139, 238, 2957, 3191, 3584
AclWI	GGATC	9 cut(s)	1199, 1591, 1811, 1824, 2469, 2482, 2919, 3243, 3338
AcoI	YGGCCR	2 cut(s)	1384, 3561
AcsI	RAATTY	9 cut(s)	192, 567, 869, 923, 1792, 2022, 2411, 2666, 2717
AcuI	CTGAAG	3 cut(s)	504, 1632, 1637
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	7 cut(s)	932, 949, 1071, 1701, 1861, 2455, 2564
AfeI	AGCGCT	1 cut(s)	3102
AfiI	CCNNNNNNNGG	3 cut(s)	195, 951, 2592
AflII	CTTAAG	2 cut(s)	1234, 2198
AhdI	GACNNNNNGTC	2 cut(s)	1159, 3432
AjnI	CCWGG	3 cut(s)	2048, 2368, 2577
AjuI	GAANNNNNNNTTGG	4 cut(s)	403, 435, 1605, 1637
AleI	CACNNNNGTG	1 cut(s)	3312
Alw21I	GWGCWC	6 cut(s)	77, 1788, 1837, 2141, 2991, 3216
Alw26I	GTCTC	8 cut(s)	463, 835, 919, 1146, 2138, 2349, 2547, 3590
Alw44I	GTGCAC	1 cut(s)	1833
AlwI	GGATC	9 cut(s)	1199, 1591, 1811, 1824, 2469, 2482, 2919, 3243, 3338
AlwNI	CAGNNNCTG	2 cut(s)	1081, 3364
Aor13HI	TCCGGA	1 cut(s)	1747
Aor51HI	AGCGCT	1 cut(s)	3102
AoxI	GGCC	6 cut(s)	1384, 2046, 2575, 3085, 3548, 3561
ApaLI	GTGCAC	1 cut(s)	1833
ApoI	RAATTY	9 cut(s)	192, 567, 869, 923, 1792, 2022, 2411, 2666, 2717
AseI	ATTAAT	1 cut(s)	1770
Asp700I	GAANNNNTTC	2 cut(s)	405, 1995
Asp718I	GGTACC	1 cut(s)	2453
AspA2I	CCTAGG	1 cut(s)	3353
AspLEI	GCGC	3 cut(s)	1144, 3103, 3502
AspS9I	GGNCC	5 cut(s)	229, 437, 2575, 2808, 2839
AsuC2I	CCSGG	1 cut(s)	1600
AsuHPI	GGTGA	6 cut(s)	777, 1055, 1982, 2000, 2438, 3152
AsuNHI	GCTAGC	2 cut(s)	32, 1105
AvaII	GGWCC	4 cut(s)	229, 437, 2808, 2839
AvrII	CCTAGG	1 cut(s)	3353
BaeGI	GKGCMC	2 cut(s)	1710, 1837
BaeI	ACNNNNGTAYC	4 cut(s)	939, 972, 3522, 3555
BalI	TGGCCA	1 cut(s)	1386
BamHI	GGATCC	2 cut(s)	1816, 2474
BanI	GGYRCC	1 cut(s)	2453
BanII	GRGCYC	4 cut(s)	77, 715, 1788, 3216
BarI	GAAGNNNNNNTAC	4 cut(s)	1944, 1976, 2886, 2918
BbsI	GAAGAC	6 cut(s)	177, 513, 791, 2411, 2807, 3431
Bbv12I	GWGCWC	6 cut(s)	77, 1788, 1837, 2141, 2991, 3216
BccI	CCATC	7 cut(s)	361, 1190, 1525, 1574, 1828, 3131, 3584
BceAI	ACGGC	4 cut(s)	41, 86, 1739, 3576
BcgI	CGANNNNNNTGC	4 cut(s)	1558, 1592, 2987, 3021
BciT130I	CCWGG	3 cut(s)	2050, 2370, 2579
BcnI	CCSGG	1 cut(s)	1600
BcoDI	GTCTC	8 cut(s)	463, 835, 919, 1146, 2138, 2349, 2547, 3590
BfmI	CTRYAG	2 cut(s)	258, 3104
BfoI	RGCGCY	3 cut(s)	1145, 3104, 3503
BfrI	CTTAAG	2 cut(s)	1234, 2198
BlnI	CCTAGG	1 cut(s)	3353
BmcAI	AGTACT	1 cut(s)	1701
Bme1390I	CCNGG	4 cut(s)	1600, 2050, 2370, 2579
Bme18I	GGWCC	4 cut(s)	229, 437, 2808, 2839
BmeRI	GACNNNNNGTC	2 cut(s)	1159, 3432
BmgT120I	GGNCC	5 cut(s)	229, 437, 2575, 2808, 2839
BmiI	GGNNCC	8 cut(s)	438, 714, 1018, 1818, 2212, 2455, 2476, 2841
BmrFI	CCNGG	4 cut(s)	1600, 2050, 2370, 2579
BmrI	ACTGGG	4 cut(s)	960, 2144, 2218, 2979
BmsI	GCATC	8 cut(s)	456, 1068, 1708, 1741, 2286, 2836, 3028, 3056
BmtI	GCTAGC	2 cut(s)	36, 1109
BmuI	ACTGGG	4 cut(s)	960, 2144, 2218, 2979
BoxI	GACNNNNGTC	1 cut(s)	795
BpiI	GAAGAC	6 cut(s)	177, 513, 791, 2411, 2807, 3431
BplI	GAGNNNNNCTC	4 cut(s)	64, 96, 443, 475
BpmI	CTGGAG	3 cut(s)	91, 1212, 2391
Bpu10I	CCTNAGC	2 cut(s)	470, 1515
BpuEI	CTTGAG	2 cut(s)	1280, 3290
BpuMI	CCSGG	1 cut(s)	1600
Bsa29I	ATCGAT	1 cut(s)	119
BsaBI	GATNNNNATC	1 cut(s)	3342
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	4 cut(s)	463, 835, 2138, 2349
BsaJI	CCNNGG	8 cut(s)	432, 1599, 1755, 1932, 2982, 3057, 3256, 3353
BsaWI	WCCGGW	5 cut(s)	128, 944, 1207, 1747, 2810
BsaXI	ACNNNNNCTCC	8 cut(s)	59, 89, 847, 877, 2732, 2762, 3585, 3615
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 951, 2592
Bse118I	RCCGGY	1 cut(s)	1448
Bse1I	ACTGG	8 cut(s)	74, 955, 1387, 2150, 2224, 2974, 3432, 3487
Bse3DI	GCAATG	6 cut(s)	51, 716, 1037, 1728, 2081, 2394
Bse8I	GATNNNNATC	1 cut(s)	3342
BseAI	TCCGGA	1 cut(s)	1747
BseBI	CCWGG	3 cut(s)	2050, 2370, 2579
BseCI	ATCGAT	1 cut(s)	119
BseDI	CCNNGG	8 cut(s)	432, 1599, 1755, 1932, 2982, 3057, 3256, 3353
BseGI	GGATG	6 cut(s)	1279, 1723, 1756, 2301, 3043, 3428
BseJI	GATNNNNATC	1 cut(s)	3342
BseLI	CCNNNNNNNGG	3 cut(s)	195, 951, 2592
BseMI	GCAATG	6 cut(s)	51, 716, 1037, 1728, 2081, 2394
BseMII	CTCAG	5 cut(s)	441, 1200, 1529, 1671, 2809
BseNI	ACTGG	8 cut(s)	74, 955, 1387, 2150, 2224, 2974, 3432, 3487
BseRI	GAGGAG	2 cut(s)	338, 2927
BseSI	GKGCMC	2 cut(s)	1710, 1837
BseYI	CCCAGC	2 cut(s)	1081, 2864
Bsh1285I	CGRYCG	1 cut(s)	1212
BshFI	GGCC	6 cut(s)	1386, 2048, 2577, 3087, 3550, 3563
BshNI	GGYRCC	1 cut(s)	2453
BshVI	ATCGAT	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	1212
BsiHKAI	GWGCWC	6 cut(s)	77, 1788, 1837, 2141, 2991, 3216
BsiSI	CCGG	8 cut(s)	129, 945, 1208, 1449, 1599, 1748, 2680, 2811
BslFI	GGGAC	4 cut(s)	1390, 2609, 2825, 3420
BslI	CCNNNNNNNGG	3 cut(s)	195, 951, 2592
BsmAI	GTCTC	8 cut(s)	463, 835, 919, 1146, 2138, 2349, 2547, 3590
BsmFI	GGGAC	4 cut(s)	1390, 2609, 2825, 3420
BsmI	GAATGC	2 cut(s)	691, 3041
BsnI	GGCC	6 cut(s)	1386, 2048, 2577, 3087, 3550, 3563
Bso31I	GGTCTC	4 cut(s)	463, 835, 2138, 2349
Bsp1286I	GDGCHC	8 cut(s)	77, 715, 1710, 1788, 1837, 2141, 2991, 3216
Bsp13I	TCCGGA	1 cut(s)	1747
Bsp1407I	TGTACA	3 cut(s)	930, 1069, 1859
Bsp143I	GATC	9 cut(s)	520, 724, 1204, 1583, 1816, 2474, 2911, 3235, 3343
Bsp19I	CCATGG	2 cut(s)	1932, 3057
BspACI	CCGC	7 cut(s)	29, 91, 139, 238, 2957, 3191, 3584
BspANI	GGCC	6 cut(s)	1386, 2048, 2577, 3087, 3550, 3563
BspCNI	CTCAG	5 cut(s)	442, 1199, 1528, 1672, 2808
BspDI	ATCGAT	1 cut(s)	119
BspEI	TCCGGA	1 cut(s)	1747
BspLI	GGNNCC	8 cut(s)	438, 714, 1018, 1818, 2212, 2455, 2476, 2841
BspMAI	CTGCAG	1 cut(s)	3108
BspOI	GCTAGC	2 cut(s)	36, 1109
BspPI	GGATC	9 cut(s)	1199, 1591, 1811, 1824, 2469, 2482, 2919, 3243, 3338
BspQI	GCTCTTC	1 cut(s)	1116
BspT107I	GGYRCC	1 cut(s)	2453
BspTI	CTTAAG	2 cut(s)	1234, 2198
BspTNI	GGTCTC	4 cut(s)	463, 835, 2138, 2349
BsrBI	CCGCTC	1 cut(s)	3584
BsrDI	GCAATG	6 cut(s)	51, 716, 1037, 1728, 2081, 2394
BsrFI	RCCGGY	1 cut(s)	1448
BsrGI	TGTACA	3 cut(s)	930, 1069, 1859
BsrI	ACTGG	8 cut(s)	74, 955, 1387, 2150, 2224, 2974, 3432, 3487
BssAI	RCCGGY	1 cut(s)	1448
BssECI	CCNNGG	8 cut(s)	432, 1599, 1755, 1932, 2982, 3057, 3256, 3353
BssMI	GATC	9 cut(s)	520, 724, 1204, 1583, 1816, 2474, 2911, 3235, 3343
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	6 cut(s)	432, 1932, 2982, 3057, 3256, 3353
Bst2UI	CCWGG	3 cut(s)	2050, 2370, 2579
Bst4CI	ACNGT	8 cut(s)	289, 496, 670, 1839, 2319, 2558, 3311, 3601
Bst6I	CTCTTC	3 cut(s)	833, 1116, 2313
BstACI	GRCGYC	1 cut(s)	87
BstAFI	CTTAAG	2 cut(s)	1234, 2198
BstAPI	GCANNNNNTGC	4 cut(s)	104, 155, 1841, 3364
BstAUI	TGTACA	3 cut(s)	930, 1069, 1859
BstDSI	CCRYGG	3 cut(s)	1755, 1932, 3057
BstF5I	GGATG	6 cut(s)	1279, 1723, 1756, 2301, 3043, 3428
BstH2I	RGCGCY	3 cut(s)	1145, 3104, 3503
BstHHI	GCGC	3 cut(s)	1144, 3103, 3502
BstKTI	GATC	9 cut(s)	523, 727, 1207, 1586, 1819, 2477, 2914, 3238, 3346
BstMAI	GTCTC	8 cut(s)	463, 835, 919, 1146, 2138, 2349, 2547, 3590
BstMBI	GATC	9 cut(s)	520, 724, 1204, 1583, 1816, 2474, 2911, 3235, 3343
BstMCI	CGRYCG	1 cut(s)	1212
BstNI	CCWGG	3 cut(s)	2050, 2370, 2579
BstNSI	RCATGY	5 cut(s)	206, 662, 1294, 1543, 3002
BstPAI	GACNNNNGTC	1 cut(s)	795
BstSCI	CCNGG	4 cut(s)	1598, 2048, 2368, 2577
BstSFI	CTRYAG	2 cut(s)	258, 3104
BstSLI	GKGCMC	2 cut(s)	1710, 1837
BstV2I	GAAGAC	6 cut(s)	177, 513, 791, 2411, 2807, 3431
BstX2I	RGATCY	5 cut(s)	1816, 2474, 2911, 3235, 3343
BstXI	CCANNNNNNTGG	1 cut(s)	2157
BstYI	RGATCY	5 cut(s)	1816, 2474, 2911, 3235, 3343
Bsu15I	ATCGAT	1 cut(s)	119
BsuRI	GGCC	6 cut(s)	1386, 2048, 2577, 3087, 3550, 3563
BsuTUI	ATCGAT	1 cut(s)	119
BtgI	CCRYGG	3 cut(s)	1755, 1932, 3057
BtsCI	GGATG	6 cut(s)	1279, 1723, 1756, 2301, 3043, 3428
BtsI	GCAGTG	1 cut(s)	1768
BtsIMutI	CAGTG	4 cut(s)	1768, 2563, 3295, 3307
CaiI	CAGNNNCTG	2 cut(s)	1081, 3364
CfoI	GCGC	3 cut(s)	1144, 3103, 3502
Cfr10I	RCCGGY	1 cut(s)	1448
Cfr13I	GGNCC	5 cut(s)	229, 437, 2575, 2808, 2839
ClaI	ATCGAT	1 cut(s)	119
CseI	GACGC	3 cut(s)	95, 2089, 3508
Csp6I	GTAC	7 cut(s)	931, 948, 1070, 1700, 1860, 2454, 2563
CspCI	CAANNNNNGTGG	2 cut(s)	3189, 3224
CviQI	GTAC	7 cut(s)	931, 948, 1070, 1700, 1860, 2454, 2563
DpnI	GATC	9 cut(s)	522, 726, 1206, 1585, 1818, 2476, 2913, 3237, 3345
DpnII	GATC	9 cut(s)	520, 724, 1204, 1583, 1816, 2474, 2911, 3235, 3343
DraI	TTTAAA	1 cut(s)	336
DriI	GACNNNNNGTC	2 cut(s)	1159, 3432
EaeI	YGGCCR	2 cut(s)	1384, 3561
Eam1104I	CTCTTC	3 cut(s)	833, 1116, 2313
Eam1105I	GACNNNNNGTC	2 cut(s)	1159, 3432
EarI	CTCTTC	3 cut(s)	833, 1116, 2313
Ecl136II	GAGCTC	3 cut(s)	75, 1786, 3214
Eco130I	CCWWGG	6 cut(s)	432, 1932, 2982, 3057, 3256, 3353
Eco147I	AGGCCT	2 cut(s)	3087, 3550
Eco24I	GRGCYC	4 cut(s)	77, 715, 1788, 3216
Eco31I	GGTCTC	4 cut(s)	463, 835, 2138, 2349
Eco47I	GGWCC	4 cut(s)	229, 437, 2808, 2839
Eco47III	AGCGCT	1 cut(s)	3102
Eco53kI	GAGCTC	3 cut(s)	75, 1786, 3214
Eco57I	CTGAAG	3 cut(s)	504, 1632, 1637
EcoICRI	GAGCTC	3 cut(s)	75, 1786, 3214
EcoO109I	RGGNCCY	2 cut(s)	437, 2839
EcoRI	GAATTC	2 cut(s)	2022, 2666
EcoRII	CCWGG	3 cut(s)	2048, 2368, 2577
EcoT14I	CCWWGG	6 cut(s)	432, 1932, 2982, 3057, 3256, 3353
EcoT22I	ATGCAT	3 cut(s)	208, 700, 3043
EcoT38I	GRGCYC	4 cut(s)	77, 715, 1788, 3216
ErhI	CCWWGG	6 cut(s)	432, 1932, 2982, 3057, 3256, 3353
FalI	AAGNNNNNCTT	6 cut(s)	1605, 1637, 1635, 1667, 1983, 2015
FaqI	GGGAC	4 cut(s)	1390, 2609, 2825, 3420
FauI	CCCGC	1 cut(s)	98
FauNDI	CATATG	1 cut(s)	3456
FokI	GGATG	6 cut(s)	1286, 1730, 1763, 2308, 3050, 3415
FriOI	GRGCYC	4 cut(s)	77, 715, 1788, 3216
GlaI	GCGC	3 cut(s)	1143, 3102, 3501
GsaI	CCCAGC	2 cut(s)	1085, 2868
GsuI	CTGGAG	3 cut(s)	91, 1212, 2391
HaeII	RGCGCY	3 cut(s)	1145, 3104, 3503
HaeIII	GGCC	6 cut(s)	1386, 2048, 2577, 3087, 3550, 3563
HapII	CCGG	8 cut(s)	129, 945, 1208, 1449, 1599, 1748, 2680, 2811
HgaI	GACGC	3 cut(s)	95, 2089, 3508
HhaI	GCGC	3 cut(s)	1144, 3103, 3502
Hin1I	GRCGYC	1 cut(s)	87
Hin6I	GCGC	3 cut(s)	1142, 3101, 3500
HinP1I	GCGC	3 cut(s)	1142, 3101, 3500
HincII	GTYRAC	1 cut(s)	3013
HindII	GTYRAC	1 cut(s)	3013
HindIII	AAGCTT	3 cut(s)	3120, 3414, 3463
HinfI	GANTC	8 cut(s)	116, 875, 2510, 2519, 2597, 2704, 3272, 3361
HpaII	CCGG	8 cut(s)	129, 945, 1208, 1449, 1599, 1748, 2680, 2811
HphI	GGTGA	6 cut(s)	777, 1055, 1982, 2000, 2438, 3152
Hpy166II	GTNNAC	5 cut(s)	499, 1835, 1973, 2933, 3013
Hpy8I	GTNNAC	5 cut(s)	499, 1835, 1973, 2933, 3013
Hpy99I	CGWCG	1 cut(s)	89
HpyCH4III	ACNGT	8 cut(s)	289, 496, 670, 1839, 2319, 2558, 3311, 3601
HpyCH4IV	ACGT	1 cut(s)	3015
HpySE526I	ACGT	1 cut(s)	3015
Hsp92I	GRCGYC	1 cut(s)	87
HspAI	GCGC	3 cut(s)	1142, 3101, 3500
Kpn2I	TCCGGA	1 cut(s)	1747
KpnI	GGTACC	1 cut(s)	2457
Kzo9I	GATC	9 cut(s)	520, 724, 1204, 1583, 1816, 2474, 2911, 3235, 3343
LguI	GCTCTTC	1 cut(s)	1116
LweI	GCATC	8 cut(s)	456, 1068, 1708, 1741, 2286, 2836, 3028, 3056
MaeII	ACGT	1 cut(s)	3015
MaeIII	GTNAC	4 cut(s)	216, 670, 2052, 3305
MalI	GATC	9 cut(s)	522, 726, 1206, 1585, 1818, 2476, 2913, 3237, 3345
MbiI	CCGCTC	1 cut(s)	3584
MboI	GATC	9 cut(s)	520, 724, 1204, 1583, 1816, 2474, 2911, 3235, 3343
MflI	RGATCY	5 cut(s)	1816, 2474, 2911, 3235, 3343
MhlI	GDGCHC	8 cut(s)	77, 715, 1710, 1788, 1837, 2141, 2991, 3216
MlsI	TGGCCA	1 cut(s)	1386
MluNI	TGGCCA	1 cut(s)	1386
MlyI	GAGTC	3 cut(s)	2519, 2591, 3281
MmeI	TCCRAC	6 cut(s)	434, 1117, 1309, 1323, 2730, 2850
Mox20I	TGGCCA	1 cut(s)	1386
Mph1103I	ATGCAT	3 cut(s)	208, 700, 3043
MroI	TCCGGA	1 cut(s)	1747
MroXI	GAANNNNTTC	2 cut(s)	405, 1995
MscI	TGGCCA	1 cut(s)	1386
MslI	CAYNNNNRTG	2 cut(s)	807, 3312
Msp20I	TGGCCA	1 cut(s)	1386
MspA1I	CMGCKG	2 cut(s)	29, 1190
MspCI	CTTAAG	2 cut(s)	1234, 2198
MspI	CCGG	8 cut(s)	129, 945, 1208, 1449, 1599, 1748, 2680, 2811
MspR9I	CCNGG	4 cut(s)	1600, 2050, 2370, 2579
Mva1269I	GAATGC	2 cut(s)	691, 3041
MvaI	CCWGG	3 cut(s)	2050, 2370, 2579
NciI	CCSGG	1 cut(s)	1600
NcoI	CCATGG	2 cut(s)	1932, 3057
NdeI	CATATG	1 cut(s)	3456
NdeII	GATC	9 cut(s)	520, 724, 1204, 1583, 1816, 2474, 2911, 3235, 3343
NheI	GCTAGC	2 cut(s)	32, 1105
NlaIV	GGNNCC	8 cut(s)	438, 714, 1018, 1818, 2212, 2455, 2476, 2841
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	3305
NsiI	ATGCAT	3 cut(s)	208, 700, 3043
NspI	RCATGY	5 cut(s)	206, 662, 1294, 1543, 3002
OliI	CACNNNNGTG	1 cut(s)	3312
PaeI	GCATGC	2 cut(s)	206, 1543
PceI	AGGCCT	2 cut(s)	3087, 3550
PciSI	GCTCTTC	1 cut(s)	1116
PctI	GAATGC	2 cut(s)	691, 3041
PdmI	GAANNNNTTC	2 cut(s)	405, 1995
PfeI	GAWTC	5 cut(s)	116, 875, 2519, 2704, 3361
PleI	GAGTC	3 cut(s)	2518, 2591, 3280
PpsI	GAGTC	3 cut(s)	2518, 2591, 3280
PpuMI	RGGWCCY	2 cut(s)	437, 2839
PshAI	GACNNNNGTC	1 cut(s)	795
PshBI	ATTAAT	1 cut(s)	1770
Psp124BI	GAGCTC	3 cut(s)	77, 1788, 3216
Psp5II	RGGWCCY	2 cut(s)	437, 2839
Psp6I	CCWGG	3 cut(s)	2048, 2368, 2577
PspFI	CCCAGC	2 cut(s)	1081, 2864
PspGI	CCWGG	3 cut(s)	2048, 2368, 2577
PspN4I	GGNNCC	8 cut(s)	438, 714, 1018, 1818, 2212, 2455, 2476, 2841
PspPI	GGNCC	5 cut(s)	229, 437, 2575, 2808, 2839
PspPPI	RGGWCCY	2 cut(s)	437, 2839
PstI	CTGCAG	1 cut(s)	3108
PstNI	CAGNNNCTG	2 cut(s)	1081, 3364
PsuI	RGATCY	5 cut(s)	1816, 2474, 2911, 3235, 3343
PvuII	CAGCTG	1 cut(s)	1190
RsaI	GTAC	7 cut(s)	932, 949, 1071, 1701, 1861, 2455, 2564
RsaNI	GTAC	7 cut(s)	931, 948, 1070, 1700, 1860, 2454, 2563
RseI	CAYNNNNRTG	2 cut(s)	807, 3312
SacI	GAGCTC	3 cut(s)	77, 1788, 3216
SapI	GCTCTTC	1 cut(s)	1116
Sau3AI	GATC	9 cut(s)	520, 724, 1204, 1583, 1816, 2474, 2911, 3235, 3343
Sau96I	GGNCC	5 cut(s)	229, 437, 2575, 2808, 2839
ScaI	AGTACT	1 cut(s)	1701
SchI	GAGTC	3 cut(s)	2519, 2591, 3281
ScrFI	CCNGG	4 cut(s)	1600, 2050, 2370, 2579
SduI	GDGCHC	8 cut(s)	77, 715, 1710, 1788, 1837, 2141, 2991, 3216
SfaNI	GCATC	8 cut(s)	456, 1068, 1708, 1741, 2286, 2836, 3028, 3056
SfcI	CTRYAG	2 cut(s)	258, 3104
SinI	GGWCC	4 cut(s)	229, 437, 2808, 2839
SmiMI	CAYNNNNRTG	2 cut(s)	807, 3312
SmlI	CTYRAG	4 cut(s)	1234, 1295, 2198, 3269
SmoI	CTYRAG	4 cut(s)	1234, 1295, 2198, 3269
SphI	GCATGC	2 cut(s)	206, 1543
SseBI	AGGCCT	2 cut(s)	3087, 3550
SsiI	CCGC	7 cut(s)	29, 91, 139, 238, 2957, 3191, 3584
SspI	AATATT	4 cut(s)	903, 973, 1638, 2364
SstI	GAGCTC	3 cut(s)	77, 1788, 3216
StuI	AGGCCT	2 cut(s)	3087, 3550
StyD4I	CCNGG	4 cut(s)	1598, 2048, 2368, 2577
StyI	CCWWGG	6 cut(s)	432, 1932, 2982, 3057, 3256, 3353
TaaI	ACNGT	8 cut(s)	289, 496, 670, 1839, 2319, 2558, 3311, 3601
TaiI	ACGT	1 cut(s)	3018
TaqI	TCGA	7 cut(s)	66, 114, 119, 291, 1212, 1578, 3197
TatI	WGTACW	4 cut(s)	930, 1069, 1699, 1859
TauI	GCSGC	2 cut(s)	32, 2959
TfiI	GAWTC	5 cut(s)	116, 875, 2519, 2704, 3361
TscAI	CASTG	4 cut(s)	1768, 2563, 3295, 3314
TseFI	GTSAC	1 cut(s)	3305
Tsp45I	GTSAC	1 cut(s)	3305
TspGWI	ACGGA	2 cut(s)	1332, 2337
TspRI	CASTG	4 cut(s)	1768, 2563, 3295, 3314
Vha464I	CTTAAG	2 cut(s)	1234, 2198
VneI	GTGCAC	1 cut(s)	1833
VpaK11BI	GGWCC	4 cut(s)	229, 437, 2808, 2839
VspI	ATTAAT	1 cut(s)	1770
XapI	RAATTY	9 cut(s)	192, 567, 869, 923, 1792, 2022, 2411, 2666, 2717
XceI	RCATGY	5 cut(s)	206, 662, 1294, 1543, 3002
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2366
XmaJI	CCTAGG	1 cut(s)	3353
XmnI	GAANNNNTTC	2 cut(s)	405, 1995
ZrmI	AGTACT	1 cut(s)	1701
Zsp2I	ATGCAT	3 cut(s)	208, 700, 3043

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.