Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0034779.1

Orthogroup ID

OG0012378

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2930

Gene Structure 2930 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0034779.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

atggaggcgagcaacaatagcagcagcaacctagctggcagcgttgcccaagccattgccgtctctctcgactggagctccacgcccgacgctcgcaaagccgccgtggcttttcttgaatcgattaaaactggagatgtgcgtgttttggaaaatacagcgttccttctagtgaaaaaggattggtcttctgaaattcggttgcatgcatttaaaatgttgcagcatttggtccggttgcggtgggaggaactaaaccctacagaacatagaaactttgctaatgtcactgttgatctaatgtctgaaattgcaaatcctaatgaagagtgggctttgaaaagtcagacagcagcacttgttgctgagatagttagaagtgaaggagtagatctctggcaggaactgcttccaactctggtttccttatctgcaaagggtcctatacaagctgagttggtctccatgatgctgaggtggcttcctgaagacattactgttcacaatgaagatttggaagctgatcggagaaggctattgttgcgtgggctgaccctatccttacctgaaattttacctctattatacaacttactagagaggcattttggagctgccatgagtgaagcagggaaacaacaagtggaccttgcaaaacaacatgcatctgcagtaacagctactttaaatgctgttaatgcatattctgaatgggctccattgcctgatcttgctaaatatggtataattcatgggtgtggtttcttactttcttcacctgacttccgtcttcatgcttgtgagtttttcaaacttgtttccccaagaaagagacatgttgatacatcgactcctgaatttgattctgcaatgagtactgtctttcatattttaatgaatgcctccaaagaatttttgtacagctctggcgtcaatgctggggtgattgatgaaagcaatattgaatttgcggaatatttatgtgaaagtatggtgtctttgggttcaacaaacttgcaatgtatcgcgggtgatagcaccacattacctctttatttacaacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005049 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006810 GO:0006913 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009909 GO:0009910 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0010016 GO:0015931 GO:0022622 GO:0031074 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033157 GO:0042565 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046822 GO:0046825 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048580 GO:0048581 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0051049 GO:0051093 GO:0051168 GO:0051169 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051641 GO:0051649 GO:0060341 GO:0061716 GO:0065001 GO:0065007 GO:0070201 GO:0071702 GO:0071705 GO:0090087 GO:0097064 GO:0097159 GO:0099402 GO:0140104 GO:0140142 GO:1901363 GO:1903827 GO:1905392 GO:1990428 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Xpo1

Protein Analysis

355

Amino Acids

39.33

Weight (kDa)

5.12

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05040 AT3G05040
fragaria_vesca	FvH4_6g04110
malus_domestica	MD04G1216400.v1.1 MD12G1232900.v1.1
prunus_persica	Prupe.6G336100_v2.0.a1
pyrus_communis	pycom04g19230 pycom12g21520
rosa_chinensis	RchiOBHm_Chr3g0452661
rosa_multiflora	Rmu_co8350293.1_g000001 Rmu_sc0034779.1_g000001 Rmu_ssc0000156.1_g000010
rosa_roxburghii	Rroxscaffold_6G00429700
rosa_rugosa	Rorug02G0642500.1
rosa_samantha	Rh3AG044700 Rh3BG047000 Rh3CG045500 Rh3DG045900
rosa_wichuraiana	Rw3G003490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	1028
AciI	CCGC	4 cut(s)	102, 241, 971, 1028
AcsI	RAATTY	5 cut(s)	195, 570, 857, 911, 965
AcuI	CTGAAG	1 cut(s)	507
AcyI	GRCGYC	1 cut(s)	930
AfaI	GTAC	2 cut(s)	877, 920
AflIII	ACRYGT	1 cut(s)	835
AgsI	TTSAA	5 cut(s)	119, 340, 811, 965, 1008
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
AluBI	AGCT	7 cut(s)	35, 78, 452, 521, 614, 680, 924
AluI	AGCT	7 cut(s)	35, 78, 452, 521, 614, 680, 924
Alw21I	GWGCWC	1 cut(s)	80
Alw26I	GTCTC	3 cut(s)	67, 466, 826
AlwNI	CAGNNNCTG	1 cut(s)	406
ApeKI	GCWGC	6 cut(s)	21, 24, 39, 223, 353, 614
ApoI	RAATTY	5 cut(s)	195, 570, 857, 911, 965
Asp700I	GAANNNNTTC	1 cut(s)	408
AspS9I	GGNCC	3 cut(s)	232, 440, 646
AsuHPI	GGTGA	3 cut(s)	768, 955, 1043
AvaII	GGWCC	3 cut(s)	232, 440, 646
BanII	GRGCYC	2 cut(s)	80, 718
BbsI	GAAGAC	3 cut(s)	180, 495, 782
Bbv12I	GWGCWC	1 cut(s)	80
BbvCI	CCTCAGC	1 cut(s)	473
BbvI	GCAGC	6 cut(s)	33, 36, 51, 235, 365, 601
BceAI	ACGGC	2 cut(s)	44, 89
BcoDI	GTCTC	3 cut(s)	67, 466, 826
BfaI	CTAG	3 cut(s)	32, 170, 596
BfmI	CTRYAG	2 cut(s)	261, 669
BglI	GCCNNNNNGGC	1 cut(s)	107
BglII	AGATCT	1 cut(s)	391
BisI	GCNGC	7 cut(s)	22, 25, 40, 102, 224, 354, 615
BlsI	GCNGC	7 cut(s)	23, 26, 41, 103, 225, 355, 616
BmcAI	AGTACT	1 cut(s)	877
Bme18I	GGWCC	3 cut(s)	232, 440, 646
BmgT120I	GGNCC	3 cut(s)	232, 440, 646
BmiI	GGNNCC	2 cut(s)	441, 717
BmsI	GCATC	2 cut(s)	459, 674
BoxI	GACNNNNGTC	1 cut(s)	786
BpiI	GAAGAC	3 cut(s)	180, 495, 782
BplI	GAGNNNNNCTC	4 cut(s)	378, 410, 446, 478
BpmI	CTGGAG	2 cut(s)	94, 153
Bpu10I	CCTNAGC	1 cut(s)	473
Bsa29I	ATCGAT	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	930
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	1 cut(s)	105
BsaWI	WCCGGW	1 cut(s)	234
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 835, 865
Bse1I	ACTGG	2 cut(s)	77, 136
Bse3DI	GCAATG	4 cut(s)	54, 719, 876, 1025
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	1 cut(s)	105
BseMI	GCAATG	4 cut(s)	54, 719, 876, 1025
BseMII	CTCAG	3 cut(s)	357, 444, 464
BseNI	ACTGG	2 cut(s)	77, 136
BseXI	GCAGC	6 cut(s)	33, 36, 51, 235, 365, 601
BseYI	CCCAGC	1 cut(s)	938
Bsh1236I	CGCG	1 cut(s)	1028
BshVI	ATCGAT	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	80
BsiSI	CCGG	1 cut(s)	235
BsmAI	GTCTC	3 cut(s)	67, 466, 826
BsmBI	CGTCTC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	904
Bso31I	GGTCTC	1 cut(s)	466
Bsp1286I	GDGCHC	2 cut(s)	80, 718
Bsp1407I	TGTACA	1 cut(s)	918
Bsp143I	GATC	4 cut(s)	295, 391, 523, 727
BspACI	CCGC	4 cut(s)	102, 241, 971, 1028
BspCNI	CTCAG	3 cut(s)	358, 445, 465
BspDI	ATCGAT	1 cut(s)	122
BspFNI	CGCG	1 cut(s)	1028
BspLI	GGNNCC	2 cut(s)	441, 717
BspMAI	CTGCAG	1 cut(s)	673
BspTNI	GGTCTC	1 cut(s)	466
BsrDI	GCAATG	4 cut(s)	54, 719, 876, 1025
BsrGI	TGTACA	1 cut(s)	918
BsrI	ACTGG	2 cut(s)	77, 136
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	4 cut(s)	295, 391, 523, 727
BssNI	GRCGYC	1 cut(s)	930
Bst4CI	ACNGT	3 cut(s)	292, 499, 880
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	930
BstAPI	GCANNNNNTGC	2 cut(s)	362, 406
BstAUI	TGTACA	1 cut(s)	918
BstC8I	GCNNGC	4 cut(s)	10, 37, 94, 207
BstDEI	CTNAG	3 cut(s)	366, 453, 473
BstDSI	CCRYGG	1 cut(s)	105
BstFNI	CGCG	1 cut(s)	1028
BstKTI	GATC	4 cut(s)	298, 394, 526, 730
BstMAI	GTCTC	3 cut(s)	67, 466, 826
BstMBI	GATC	4 cut(s)	295, 391, 523, 727
BstMWI	GCNNNNNNNGC	9 cut(s)	18, 98, 107, 362, 406, 478, 541, 677, 698
BstNSI	RCATGY	3 cut(s)	209, 665, 839
BstPAI	GACNNNNGTC	1 cut(s)	786
BstSFI	CTRYAG	2 cut(s)	261, 669
BstUI	CGCG	1 cut(s)	1028
BstV1I	GCAGC	6 cut(s)	33, 36, 51, 235, 365, 601
BstV2I	GAAGAC	3 cut(s)	180, 495, 782
BstX2I	RGATCY	1 cut(s)	391
BstYI	RGATCY	1 cut(s)	391
Bsu15I	ATCGAT	1 cut(s)	122
BsuTUI	ATCGAT	1 cut(s)	122
BtgI	CCRYGG	1 cut(s)	105
BtsIMutI	CAGTG	1 cut(s)	288
Cac8I	GCNNGC	4 cut(s)	10, 37, 94, 207
CaiI	CAGNNNCTG	1 cut(s)	406
Cfr13I	GGNCC	3 cut(s)	232, 440, 646
ClaI	ATCGAT	1 cut(s)	122
CseI	GACGC	2 cut(s)	98, 919
Csp6I	GTAC	2 cut(s)	876, 919
CviAII	CATG	7 cut(s)	206, 466, 619, 662, 752, 794, 836
CviQI	GTAC	2 cut(s)	876, 919
DdeI	CTNAG	3 cut(s)	366, 453, 473
DpnI	GATC	4 cut(s)	297, 393, 525, 729
DpnII	GATC	4 cut(s)	295, 391, 523, 727
DraI	TTTAAA	2 cut(s)	214, 687
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Ecl136II	GAGCTC	1 cut(s)	78
Eco24I	GRGCYC	2 cut(s)	80, 718
Eco31I	GGTCTC	1 cut(s)	466
Eco47I	GGWCC	3 cut(s)	232, 440, 646
Eco53kI	GAGCTC	1 cut(s)	78
Eco57I	CTGAAG	1 cut(s)	507
EcoICRI	GAGCTC	1 cut(s)	78
EcoO109I	RGGNCCY	1 cut(s)	440
EcoT22I	ATGCAT	3 cut(s)	211, 667, 703
EcoT38I	GRGCYC	2 cut(s)	80, 718
Esp3I	CGTCTC	1 cut(s)	67
FaeI	CATG	7 cut(s)	209, 469, 622, 665, 755, 797, 839
FalI	AAGNNNNNCTT	2 cut(s)	633, 665
FatI	CATG	7 cut(s)	205, 465, 618, 661, 751, 793, 835
FauI	CCCGC	1 cut(s)	1021
Fnu4HI	GCNGC	7 cut(s)	22, 25, 40, 102, 224, 354, 615
FriOI	GRGCYC	2 cut(s)	80, 718
Fsp4HI	GCNGC	7 cut(s)	22, 25, 40, 102, 224, 354, 615
FspBI	CTAG	3 cut(s)	32, 170, 596
GluI	GCNGC	7 cut(s)	22, 25, 40, 102, 224, 354, 615
GsaI	CCCAGC	1 cut(s)	942
GsuI	CTGGAG	2 cut(s)	94, 153
HapII	CCGG	1 cut(s)	235
HgaI	GACGC	2 cut(s)	98, 919
Hin1I	GRCGYC	1 cut(s)	930
Hin1II	CATG	7 cut(s)	209, 469, 622, 665, 755, 797, 839
HinfI	GANTC	3 cut(s)	119, 850, 863
HpaII	CCGG	1 cut(s)	235
HphI	GGTGA	3 cut(s)	768, 955, 1043
Hpy166II	GTNNAC	2 cut(s)	502, 646
Hpy188I	TCNGA	5 cut(s)	193, 307, 348, 528, 709
Hpy188III	TCNNGA	4 cut(s)	68, 116, 485, 854
Hpy8I	GTNNAC	2 cut(s)	502, 646
Hpy99I	CGWCG	1 cut(s)	92
HpyAV	CCTTC	3 cut(s)	176, 377, 525
HpyCH4III	ACNGT	3 cut(s)	292, 499, 880
HpyF10VI	GCNNNNNNNGC	9 cut(s)	18, 98, 107, 362, 406, 478, 541, 677, 698
HpyF3I	CTNAG	3 cut(s)	366, 453, 473
Hsp92I	GRCGYC	1 cut(s)	930
Hsp92II	CATG	7 cut(s)	209, 469, 622, 665, 755, 797, 839
Kzo9I	GATC	4 cut(s)	295, 391, 523, 727
LmnI	GCTCC	4 cut(s)	75, 83, 611, 721
Lsp1109I	GCAGC	6 cut(s)	33, 36, 51, 235, 365, 601
LweI	GCATC	2 cut(s)	459, 674
MaeI	CTAG	3 cut(s)	32, 170, 596
MaeIII	GTNAC	2 cut(s)	286, 673
MalI	GATC	4 cut(s)	297, 393, 525, 729
MboI	GATC	4 cut(s)	295, 391, 523, 727
MboII	GAAGA	6 cut(s)	180, 338, 500, 521, 765, 782
MflI	RGATCY	1 cut(s)	391
MhlI	GDGCHC	2 cut(s)	80, 718
MluCI	AATT	7 cut(s)	195, 309, 570, 747, 857, 911, 965
MlyI	GAGTC	1 cut(s)	844
MmeI	TCCRAC	1 cut(s)	437
MnlI	CCTC	6 cut(s)	241, 468, 588, 594, 913, 1059
Mph1103I	ATGCAT	3 cut(s)	211, 667, 703
MroXI	GAANNNNTTC	1 cut(s)	408
MseI	TTAA	5 cut(s)	126, 213, 686, 696, 893
MslI	CAYNNNNRTG	2 cut(s)	756, 798
MspI	CCGG	1 cut(s)	235
Mva1269I	GAATGC	1 cut(s)	904
MvnI	CGCG	1 cut(s)	1028
MwoI	GCNNNNNNNGC	9 cut(s)	18, 98, 107, 362, 406, 478, 541, 677, 698
NdeII	GATC	4 cut(s)	295, 391, 523, 727
NlaIII	CATG	7 cut(s)	209, 469, 622, 665, 755, 797, 839
NlaIV	GGNNCC	2 cut(s)	441, 717
NmuCI	GTSAC	1 cut(s)	286
NsiI	ATGCAT	3 cut(s)	211, 667, 703
NspI	RCATGY	3 cut(s)	209, 665, 839
PaeI	GCATGC	1 cut(s)	209
PciI	ACATGT	1 cut(s)	835
PctI	GAATGC	1 cut(s)	904
PdmI	GAANNNNTTC	1 cut(s)	408
PfeI	GAWTC	2 cut(s)	119, 863
PkrI	GCNGC	7 cut(s)	23, 26, 41, 103, 225, 355, 616
PleI	GAGTC	1 cut(s)	844
PpsI	GAGTC	1 cut(s)	844
PpuMI	RGGWCCY	1 cut(s)	440
PscI	ACATGT	1 cut(s)	835
PshAI	GACNNNNGTC	1 cut(s)	786
Psp124BI	GAGCTC	1 cut(s)	80
Psp5II	RGGWCCY	1 cut(s)	440
PspFI	CCCAGC	1 cut(s)	938
PspN4I	GGNNCC	2 cut(s)	441, 717
PspPI	GGNCC	3 cut(s)	232, 440, 646
PspPPI	RGGWCCY	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	673
PstNI	CAGNNNCTG	1 cut(s)	406
PsuI	RGATCY	1 cut(s)	391
RsaI	GTAC	2 cut(s)	877, 920
RsaNI	GTAC	2 cut(s)	876, 919
RseI	CAYNNNNRTG	2 cut(s)	756, 798
SacI	GAGCTC	1 cut(s)	80
SaqAI	TTAA	5 cut(s)	126, 213, 686, 696, 893
SatI	GCNGC	7 cut(s)	22, 25, 40, 102, 224, 354, 615
Sau3AI	GATC	4 cut(s)	295, 391, 523, 727
Sau96I	GGNCC	3 cut(s)	232, 440, 646
ScaI	AGTACT	1 cut(s)	877
SchI	GAGTC	1 cut(s)	844
SduI	GDGCHC	2 cut(s)	80, 718
SfaNI	GCATC	2 cut(s)	459, 674
SfcI	CTRYAG	2 cut(s)	261, 669
SinI	GGWCC	3 cut(s)	232, 440, 646
SmiMI	CAYNNNNRTG	2 cut(s)	756, 798
SphI	GCATGC	1 cut(s)	209
Sse9I	AATT	7 cut(s)	195, 309, 570, 747, 857, 911, 965
SsiI	CCGC	4 cut(s)	102, 241, 971, 1028
SspI	AATATT	2 cut(s)	961, 977
SspMI	CTAG	3 cut(s)	32, 170, 596
SstI	GAGCTC	1 cut(s)	80
TaaI	ACNGT	3 cut(s)	292, 499, 880
TaqI	TCGA	3 cut(s)	69, 122, 848
TasI	AATT	7 cut(s)	195, 309, 570, 747, 857, 911, 965
TatI	WGTACW	2 cut(s)	875, 918
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	119, 863
Tru1I	TTAA	5 cut(s)	126, 213, 686, 696, 893
Tru9I	TTAA	5 cut(s)	126, 213, 686, 696, 893
TscAI	CASTG	1 cut(s)	295
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	6 cut(s)	21, 24, 39, 223, 353, 614
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	7 cut(s)	339, 522, 740, 782, 875, 911, 966
TspGWI	ACGGA	1 cut(s)	776
TspRI	CASTG	1 cut(s)	295
VpaK11BI	GGWCC	3 cut(s)	232, 440, 646
XapI	RAATTY	5 cut(s)	195, 570, 857, 911, 965
XceI	RCATGY	3 cut(s)	209, 665, 839
XmnI	GAANNNNTTC	1 cut(s)	408
XspI	CTAG	3 cut(s)	32, 170, 596
ZrmI	AGTACT	1 cut(s)	877
Zsp2I	ATGCAT	3 cut(s)	211, 667, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.