Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0012378

Physical Location & Seq

Genomic Coordinates Forward (+)

3027662 .. 3037047

Gene Structure 9386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG047000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3072 bp

ATGGAGGCGAGCAACAATAGCAGCAGCAACCTAGCTGGCAGCGTTGCCCAAGCCATTGCCGTCTCTCTCGACTGGAGCTCCACGCCCGATGCTCGCAAAGCCGCCGTGGCTTTTCTTGAATCGATTAAAACTGGAGATGTGCGTGTTTTGGCAAATACAGCGTTCCTTCTAGTGAAAAAGGATTGGTCTTCTGAAATTCGGTTGCATGCATTTAAAATGTTGCAGCATTTGGTCCGGTTGCGGTGGGAGGAACTAAACCCTACAGAACATAGAAACTTTGCTAATGTCACTGTTGATCTAATGTCTGAAATTGCAAATCCTAATGAAGAGTGGGCTTTGAAAAGTCAGACAGCAGCACTTGTTGCTGAGATAGTTAGAAGTGAAGGAGTAGATCTCTGGCAGGAACTGCTTCCAACTCTGGTTTCCTTATCTGCAAAGGGTCCTATACAAGCTGAGTTGGTCTCCATGATGCTGAGGTGGCTTCCTGAAGACATTACTGTTCACAATGAAGATTTGGAAGCTGATCGGAGAAGGCTATTGTTGCGTGGGCTGACCCTATCCTTACCTGAAATTTTGCCTCTATTATACAACTTACTAGAGAGGCATTTTGGAGCTGCCATGAGTGAAGCAGGGAAACAACAAGTGGACCTTGCAAAACAACATGCATCTGCAGTAACAGCTACTTTAAATGCTGTTAATGCATATTCTGAATGGGCTCCATTGCCTGATCTTGCTAAATATGGTATAATTCATGGGTGTGGTTTCTTACTTTCTTCACCTGACTTCCGTCTTCATGCTTGTGAGTTTTTCAAACTTATTTCCCCAAGAAAGAGACATGTTGATACATCGACTCCTGAATTTGATTCTGCAATGAGTACTGTCTTTCATATTTTAATGAATGCCTCCAAAGAATTTTTGTACAACTCTGGCGTCAATGCTGGGGTGATTGATGAAAGCAATATTGAATTTGCGGAATATTTATGTGAAAGTATGGTGTCTTTGGGTTCAACAAACTTGCAATGTATCGTGGGTGATAGCACCACATTACCTCTTTATTTACAACAGATGCTCGGGTTTTTTCAACATCATAAGCTAGTTCTTCATTTTCAATCTCTCCATTTTTGGCTGGCACTTATGAGAGACTTAATGTCTAAGCCACCTAAGTCAAAGGTGGCTGCACACTCATCAGCTGATGGTTCTGACCAGGCTGATAAGGAAAAGCAGAAGATTTTGAGTTTTGTGAACGATGACATATGTAGTGCACTTCTGGATGTATCTTTCCAACGATTGCTCAAGAGAGAAAAGATTCTTCATGGAACATCAATCTCTTTGGGGTCATTGGAGTTATGGAGTGATGATGTTGACAGCAAAGGAACTTTCGGCCAGTATCGCTCAAAGCTGTTAGAACTGATCAAGTTTGTTACCTCATACAAGCCTGTTATAGCTGGTGCTAAGGTTTCTGAAAGAATTGATACAATCATTAAAAGCCTCTTGCTTTCTCCAATGCCTGCTCAGGACTTAGCTGTGATGGAAAGCATGCAGTCGGCTCTTGAAAATGTTGTAAGCACTATTTTTGATAGATCAAATGAAATTGGTGGGGGCCATTCTGAAGTTCAACTAGGACTATGCAGAATATTCGAAGGTTTGCTTCAGCAACTTCTCTCTTTGAAGTGGACTGAGCCAGTCCTTGTGGAAGTACTTGGTCACTACTTGGATGCAATGGGTCCATTTTTGAACTATTTCCCAGATGCAGCAGGCAGCGTCATCAATAAACTATTTGAGCTCCTAAACTCACTCCCTTTTGCTGTTAAGGATCCCTCTACAAGTAGTGCACGATATGCAAGGTTGCAAATTTGTACATCGTTTATTCGTATAGCAAAAACTGCTGACAAAAGTATTCTTCCTCACATGAAGGGTATAGCTGATACCATGGCATATTTGCAAAAGGAAGGTCGTTTACTTCGTGGTGAACATAATCTTCTAGGCGAAGCATTTCTTGTCATGGCTTCTGCTGCTGGATTTCAACAGCAGCAAGAAGTTTTGGCCTGGTTACTAGAACCCTTGAGCCAGCAATGGGTACAGATAGAGTGGCAAAATAATTATTTATCTGAACCACTAGGTCTTGTTCGTTTGTGCATGGAGACCCCAACTATGTGGTCAGTTTTCCACTGTATCACATTCTTTGAGAAGGCACTTAAGAGAAGTGGAACCCGGAAAACACATTTGAGTTCACAAAACAACTCAGCCGCAAGTTCTACTCCCTTGCATCCTATGGCTTCTCATCTATCATGGATGCTGCCACCTCTCCCCAAACTTCTTCGTGCCATACATTCCCTTTGGTCTCCATCTGTATCTCAAACTCTACCTGGAGAAATGAAAGCTGCAATGACCATGAGCGATGTTGAGCAATACAGTCTTCTTGGTGAAGGAAACCCTAAATTGTCAAAGGGTACATTAACCTCTGGTCCTGGATCTCTTGTCACCATGAGTAAGGAAGGATATACAGAGCCAAATGAATCGGATATACGAAATTGGATGAAAGGGATCAGAGACAGTGGGTACAATGTATTGGGCCTGGCAACCACTGTCGGGGACACATTCTACAAATGTTTGGACAGTCATTCTGTTGCTCTAGCTTTGGTAGAGAATATACAGTCAATGGAATTCAGGCACATAAGACCGCTTGTTCATTCAGTTTTGATTCCTTTGGTTAAAAATTGCCCTGTGGATTTGTGGGAGGTATGGCTGGAAAAGCTCTTGCACCCATTATTTCTACACTCCCATCAGGCTCTTTGTTGCTCCTGGTCCAGTCTTCTACAAGAAGGTAGAGCAAAGGTTCCGGATGTCCATGCCATTCTTGCTGGGACAGACTTAAAAGTGGAAGTAATGGAAGAAAAGCTACTAAGAGATCTTACTCGAGAGATTTGTTCACTCCTCTCTGCCATTGCTTTGCCACAGCTAAATACTGGCCTTCCATCCTTGGAGCACTCTGGGCAAATCAGCCGAGTCGATCTATCTTCACTCAAGTCTTTAGATTCTTTTGCATCGAGCTCTATGGTTAGGTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005049 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006810 GO:0006913 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009909 GO:0009910 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0010016 GO:0015931 GO:0022622 GO:0031074 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033157 GO:0042565 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046822 GO:0046825 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048580 GO:0048581 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0051049 GO:0051093 GO:0051168 GO:0051169 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051641 GO:0051649 GO:0060341 GO:0061716 GO:0065001 GO:0065007 GO:0070201 GO:0071702 GO:0071705 GO:0090087 GO:0097064 GO:0097159 GO:0099402 GO:0140104 GO:0140142 GO:1901363 GO:1903827 GO:1905392 GO:1990428 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Xpo1

Protein Analysis

1023

Amino Acids

113.59

Weight (kDa)

6.01

Isoelectric Point (pI)

43.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xpo1	PF08389	111 - 269	3.4e-25	Exportin 1-like protein
Exportin-5	PF19273	318 - 1021	2e-248	Exportin-5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05040 AT3G05040
fragaria_vesca	FvH4_6g04110
malus_domestica	MD04G1216400.v1.1 MD12G1232900.v1.1
prunus_persica	Prupe.6G336100_v2.0.a1
pyrus_communis	pycom04g19230 pycom12g21520
rosa_chinensis	RchiOBHm_Chr3g0452661
rosa_multiflora	Rmu_co8350293.1_g000001 Rmu_sc0034779.1_g000001 Rmu_ssc0000156.1_g000010
rosa_roxburghii	Rroxscaffold_6G00429700
rosa_rugosa	Rorug02G0642500.1
rosa_samantha	Rh3AG044700 Rh3BG047000 Rh3CG045500 Rh3DG045900
rosa_wichuraiana	Rw3G003490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	2839
AciI	CCGC	5 cut(s)	102, 241, 971, 2247, 2681
AclWI	GGATC	4 cut(s)	1808, 1821, 2479, 2552
AcoI	YGGCCR	1 cut(s)	1381
AcsI	RAATTY	7 cut(s)	195, 570, 857, 911, 965, 1851, 2663
AcuI	CTGAAG	3 cut(s)	507, 1629, 1634
AcyI	GRCGYC	1 cut(s)	930
AfaI	GTAC	7 cut(s)	877, 920, 1698, 1858, 2079, 2452, 2561
AfiI	CCNNNNNNNGG	2 cut(s)	2074, 2589
AflII	CTTAAG	1 cut(s)	2195
AflIII	ACRYGT	1 cut(s)	835
AhdI	GACNNNNNGTC	1 cut(s)	1147
AjnI	CCWGG	6 cut(s)	1203, 2045, 2365, 2467, 2574, 2801
AjuI	GAANNNNNNNTTGG	2 cut(s)	406, 438
Alw21I	GWGCWC	6 cut(s)	80, 1264, 1785, 1834, 2988, 3053
Alw26I	GTCTC	7 cut(s)	67, 466, 826, 1134, 2135, 2346, 2544
Alw44I	GTGCAC	2 cut(s)	1260, 1830
AlwI	GGATC	4 cut(s)	1808, 1821, 2479, 2552
AlwNI	CAGNNNCTG	1 cut(s)	406
Ama87I	CYCGRG	2 cut(s)	1070, 2916
Aor13HI	TCCGGA	1 cut(s)	2839
AoxI	GGCC	5 cut(s)	1381, 1600, 2043, 2572, 2968
ApaLI	GTGCAC	2 cut(s)	1260, 1830
ApoI	RAATTY	7 cut(s)	195, 570, 857, 911, 965, 1851, 2663
ArsI	GACNNNNNNTTYG	2 cut(s)	1936, 1968
Asp700I	GAANNNNTTC	4 cut(s)	408, 1305, 1739, 1992
AspS9I	GGNCC	8 cut(s)	232, 440, 646, 1600, 1724, 2465, 2572, 2805
AsuC2I	CCSGG	1 cut(s)	2212
AsuHPI	GGTGA	6 cut(s)	768, 955, 1043, 1979, 2435, 2473
AsuII	TTCGAA	1 cut(s)	1638
AvaI	CYCGRG	2 cut(s)	1070, 2916
AvaII	GGWCC	6 cut(s)	232, 440, 646, 1724, 2465, 2805
BaeGI	GKGCMC	2 cut(s)	1264, 1834
BamHI	GGATCC	1 cut(s)	1813
BanII	GRGCYC	4 cut(s)	80, 718, 1785, 3053
BarI	GAAGNNNNNNTAC	4 cut(s)	1941, 1973, 2883, 2915
BbsI	GAAGAC	5 cut(s)	180, 495, 782, 2408, 2804
Bbv12I	GWGCWC	6 cut(s)	80, 1264, 1785, 1834, 2988, 3053
BbvCI	CCTCAGC	1 cut(s)	473
BccI	CCATC	5 cut(s)	1187, 1522, 2353, 2790, 2983
BceAI	ACGGC	2 cut(s)	44, 89
BcgI	CGANNNNNNTGC	2 cut(s)	1618, 1652
BciT130I	CCWGG	6 cut(s)	1205, 2047, 2367, 2469, 2576, 2803
BclI	TGATCA	1 cut(s)	1410
BcnI	CCSGG	1 cut(s)	2212
BcoDI	GTCTC	7 cut(s)	67, 466, 826, 1134, 2135, 2346, 2544
BfaI	CTAG	9 cut(s)	32, 170, 596, 1094, 1619, 1982, 2054, 2117, 2633
BfmI	CTRYAG	2 cut(s)	261, 669
BfrI	CTTAAG	1 cut(s)	2195
BglI	GCCNNNNNGGC	1 cut(s)	107
BglII	AGATCT	2 cut(s)	391, 2908
BmcAI	AGTACT	2 cut(s)	877, 1698
Bme1390I	CCNGG	7 cut(s)	1205, 2047, 2212, 2367, 2469, 2576, 2803
Bme18I	GGWCC	6 cut(s)	232, 440, 646, 1724, 2465, 2805
BmeRI	GACNNNNNGTC	1 cut(s)	1147
BmeT110I	CYCGRG	2 cut(s)	1070, 2916
BmgT120I	GGNCC	8 cut(s)	232, 440, 646, 1600, 1724, 2465, 2572, 2805
BmiI	GGNNCC	7 cut(s)	441, 717, 1601, 1725, 1815, 2209, 2838
BmrFI	CCNGG	7 cut(s)	1205, 2047, 2212, 2367, 2469, 2576, 2803
BmsI	GCATC	9 cut(s)	79, 459, 674, 1056, 1705, 1738, 2275, 2283, 3053
BoxI	GACNNNNGTC	1 cut(s)	786
BpiI	GAAGAC	5 cut(s)	180, 495, 782, 2408, 2804
BplI	GAGNNNNNCTC	4 cut(s)	378, 410, 446, 478
BpmI	CTGGAG	3 cut(s)	94, 153, 2388
Bpu10I	CCTNAGC	3 cut(s)	473, 1452, 1512
Bpu14I	TTCGAA	1 cut(s)	1638
BpuEI	CTTGAG	3 cut(s)	1277, 2083, 3008
BpuMI	CCSGG	1 cut(s)	2212
Bsa29I	ATCGAT	1 cut(s)	122
BsaHI	GRCGYC	1 cut(s)	930
BsaI	GGTCTC	3 cut(s)	466, 2135, 2346
BsaJI	CCNNGG	3 cut(s)	105, 1929, 2979
BsaWI	WCCGGW	2 cut(s)	234, 2839
BsaXI	ACNNNNNCTCC	4 cut(s)	62, 92, 835, 865
Bsc4I	CCNNNNNNNGG	2 cut(s)	2074, 2589
Bse1I	ACTGG	6 cut(s)	77, 136, 1384, 1682, 2808, 2971
Bse3DI	GCAATG	8 cut(s)	54, 719, 876, 1025, 1725, 2078, 2391, 2943
BseAI	TCCGGA	1 cut(s)	2839
BseBI	CCWGG	6 cut(s)	1205, 2047, 2367, 2469, 2576, 2803
BseCI	ATCGAT	1 cut(s)	122
BseDI	CCNNGG	3 cut(s)	105, 1929, 2979
BseGI	GGATG	7 cut(s)	1276, 1720, 2266, 2298, 2541, 2848, 2975
BseLI	CCNNNNNNNGG	2 cut(s)	2074, 2589
BseMI	GCAATG	8 cut(s)	54, 719, 876, 1025, 1725, 2078, 2391, 2943
BseMII	CTCAG	6 cut(s)	357, 444, 464, 1526, 1668, 2256
BseNI	ACTGG	6 cut(s)	77, 136, 1384, 1682, 2808, 2971
BseRI	GAGGAG	1 cut(s)	2924
BseSI	GKGCMC	2 cut(s)	1264, 1834
BseYI	CCCAGC	2 cut(s)	938, 2861
BsgI	GTGCAG	1 cut(s)	1161
BshFI	GGCC	5 cut(s)	1383, 1602, 2045, 2574, 2970
BshVI	ATCGAT	1 cut(s)	122
BsiHKAI	GWGCWC	6 cut(s)	80, 1264, 1785, 1834, 2988, 3053
BsiHKCI	CYCGRG	2 cut(s)	1070, 2916
BsiSI	CCGG	3 cut(s)	235, 2212, 2840
BslFI	GGGAC	2 cut(s)	2606, 2878
BslI	CCNNNNNNNGG	2 cut(s)	2074, 2589
BsmAI	GTCTC	7 cut(s)	67, 466, 826, 1134, 2135, 2346, 2544
BsmBI	CGTCTC	1 cut(s)	67
BsmFI	GGGAC	2 cut(s)	2606, 2878
BsmI	GAATGC	1 cut(s)	904
BsnI	GGCC	5 cut(s)	1383, 1602, 2045, 2574, 2970
Bso31I	GGTCTC	3 cut(s)	466, 2135, 2346
BsoBI	CYCGRG	2 cut(s)	1070, 2916
Bsp119I	TTCGAA	1 cut(s)	1638
Bsp1286I	GDGCHC	7 cut(s)	80, 718, 1264, 1785, 1834, 2988, 3053
Bsp13I	TCCGGA	1 cut(s)	2839
Bsp1407I	TGTACA	2 cut(s)	918, 1856
Bsp19I	CCATGG	1 cut(s)	1929
BspACI	CCGC	5 cut(s)	102, 241, 971, 2247, 2681
BspANI	GGCC	5 cut(s)	1383, 1602, 2045, 2574, 2970
BspCNI	CTCAG	6 cut(s)	358, 445, 465, 1525, 1669, 2255
BspDI	ATCGAT	1 cut(s)	122
BspEI	TCCGGA	1 cut(s)	2839
BspLI	GGNNCC	7 cut(s)	441, 717, 1601, 1725, 1815, 2209, 2838
BspMAI	CTGCAG	1 cut(s)	673
BspPI	GGATC	4 cut(s)	1808, 1821, 2479, 2552
BspT104I	TTCGAA	1 cut(s)	1638
BspTI	CTTAAG	1 cut(s)	2195
BspTNI	GGTCTC	3 cut(s)	466, 2135, 2346
BsrDI	GCAATG	8 cut(s)	54, 719, 876, 1025, 1725, 2078, 2391, 2943
BsrGI	TGTACA	2 cut(s)	918, 1856
BsrI	ACTGG	6 cut(s)	77, 136, 1384, 1682, 2808, 2971
BssECI	CCNNGG	3 cut(s)	105, 1929, 2979
BssNI	GRCGYC	1 cut(s)	930
BssT1I	CCWWGG	2 cut(s)	1929, 2979
Bst2UI	CCWGG	6 cut(s)	1205, 2047, 2367, 2469, 2576, 2803
Bst4CI	ACNGT	9 cut(s)	292, 499, 880, 2171, 2414, 2555, 2587, 2618, 2655
Bst6I	CTCTTC	1 cut(s)	321
BstACI	GRCGYC	1 cut(s)	930
BstAFI	CTTAAG	1 cut(s)	2195
BstAPI	GCANNNNNTGC	4 cut(s)	362, 406, 1838, 1883
BstAUI	TGTACA	2 cut(s)	918, 1856
BstBI	TTCGAA	1 cut(s)	1638
BstC8I	GCNNGC	9 cut(s)	10, 37, 94, 207, 1128, 1509, 1538, 1756, 2069
BstDSI	CCRYGG	2 cut(s)	105, 1929
BstF5I	GGATG	7 cut(s)	1276, 1720, 2266, 2298, 2541, 2848, 2975
BstMAI	GTCTC	7 cut(s)	67, 466, 826, 1134, 2135, 2346, 2544
BstNI	CCWGG	6 cut(s)	1205, 2047, 2367, 2469, 2576, 2803
BstNSI	RCATGY	4 cut(s)	209, 665, 839, 1540
BstPAI	GACNNNNGTC	1 cut(s)	786
BstSCI	CCNGG	7 cut(s)	1203, 2045, 2210, 2365, 2467, 2574, 2801
BstSFI	CTRYAG	2 cut(s)	261, 669
BstSLI	GKGCMC	2 cut(s)	1264, 1834
BstV2I	GAAGAC	5 cut(s)	180, 495, 782, 2408, 2804
BstX2I	RGATCY	4 cut(s)	391, 1813, 2471, 2908
BstXI	CCANNNNNNTGG	1 cut(s)	2154
BstYI	RGATCY	4 cut(s)	391, 1813, 2471, 2908
Bsu15I	ATCGAT	1 cut(s)	122
BsuRI	GGCC	5 cut(s)	1383, 1602, 2045, 2574, 2970
BsuTUI	ATCGAT	1 cut(s)	122
BtgI	CCRYGG	2 cut(s)	105, 1929
BtgZI	GCGATG	1 cut(s)	2412
BtsCI	GGATG	7 cut(s)	1276, 1720, 2266, 2298, 2541, 2848, 2975
BtsIMutI	CAGTG	4 cut(s)	288, 2167, 2560, 2583
Cac8I	GCNNGC	9 cut(s)	10, 37, 94, 207, 1128, 1509, 1538, 1756, 2069
CaiI	CAGNNNCTG	1 cut(s)	406
Cfr13I	GGNCC	8 cut(s)	232, 440, 646, 1600, 1724, 2465, 2572, 2805
ClaI	ATCGAT	1 cut(s)	122
CseI	GACGC	2 cut(s)	919, 1750
Csp6I	GTAC	7 cut(s)	876, 919, 1697, 1857, 2078, 2451, 2560
CviQI	GTAC	7 cut(s)	876, 919, 1697, 1857, 2078, 2451, 2560
DraI	TTTAAA	2 cut(s)	214, 687
DriI	GACNNNNNGTC	1 cut(s)	1147
EaeI	YGGCCR	1 cut(s)	1381
Eam1104I	CTCTTC	1 cut(s)	321
Eam1105I	GACNNNNNGTC	1 cut(s)	1147
EarI	CTCTTC	1 cut(s)	321
Ecl136II	GAGCTC	3 cut(s)	78, 1783, 3051
Eco130I	CCWWGG	2 cut(s)	1929, 2979
Eco24I	GRGCYC	4 cut(s)	80, 718, 1785, 3053
Eco31I	GGTCTC	3 cut(s)	466, 2135, 2346
Eco47I	GGWCC	6 cut(s)	232, 440, 646, 1724, 2465, 2805
Eco53kI	GAGCTC	3 cut(s)	78, 1783, 3051
Eco57I	CTGAAG	3 cut(s)	507, 1629, 1634
Eco88I	CYCGRG	2 cut(s)	1070, 2916
EcoICRI	GAGCTC	3 cut(s)	78, 1783, 3051
EcoO109I	RGGNCCY	1 cut(s)	440
EcoRI	GAATTC	1 cut(s)	2663
EcoRII	CCWGG	6 cut(s)	1203, 2045, 2365, 2467, 2574, 2801
EcoT14I	CCWWGG	2 cut(s)	1929, 2979
EcoT22I	ATGCAT	3 cut(s)	211, 667, 703
EcoT38I	GRGCYC	4 cut(s)	80, 718, 1785, 3053
ErhI	CCWWGG	2 cut(s)	1929, 2979
Esp3I	CGTCTC	1 cut(s)	67
FalI	AAGNNNNNCTT	6 cut(s)	633, 665, 1632, 1664, 1980, 2012
FaqI	GGGAC	2 cut(s)	2606, 2878
FauNDI	CATATG	1 cut(s)	1253
FbaI	TGATCA	1 cut(s)	1410
FokI	GGATG	7 cut(s)	1283, 1727, 2253, 2305, 2548, 2855, 2962
FriOI	GRGCYC	4 cut(s)	80, 718, 1785, 3053
FspBI	CTAG	9 cut(s)	32, 170, 596, 1094, 1619, 1982, 2054, 2117, 2633
GsaI	CCCAGC	2 cut(s)	942, 2865
GsuI	CTGGAG	3 cut(s)	94, 153, 2388
HaeIII	GGCC	5 cut(s)	1383, 1602, 2045, 2574, 2970
HapII	CCGG	3 cut(s)	235, 2212, 2840
HgaI	GACGC	2 cut(s)	919, 1750
Hin1I	GRCGYC	1 cut(s)	930
HincII	GTYRAC	1 cut(s)	1363
HindII	GTYRAC	1 cut(s)	1363
HinfI	GANTC	8 cut(s)	119, 850, 863, 1306, 2516, 2701, 3006, 3035
HpaII	CCGG	3 cut(s)	235, 2212, 2840
HphI	GGTGA	6 cut(s)	768, 955, 1043, 1979, 2435, 2473
HpyCH4III	ACNGT	9 cut(s)	292, 499, 880, 2171, 2414, 2555, 2587, 2618, 2655
Hsp92I	GRCGYC	1 cut(s)	930
Kpn2I	TCCGGA	1 cut(s)	2839
Ksp22I	TGATCA	1 cut(s)	1410
LmnI	GCTCC	7 cut(s)	75, 83, 611, 721, 1788, 2804, 2983
LweI	GCATC	9 cut(s)	79, 459, 674, 1056, 1705, 1738, 2275, 2283, 3053
MaeI	CTAG	9 cut(s)	32, 170, 596, 1094, 1619, 1982, 2054, 2117, 2633
MaeIII	GTNAC	6 cut(s)	286, 673, 1420, 1703, 2049, 2479
MflI	RGATCY	4 cut(s)	391, 1813, 2471, 2908
MhlI	GDGCHC	7 cut(s)	80, 718, 1264, 1785, 1834, 2988, 3053
MlyI	GAGTC	2 cut(s)	844, 3015
MmeI	TCCRAC	2 cut(s)	437, 1306
Mph1103I	ATGCAT	3 cut(s)	211, 667, 703
MroI	TCCGGA	1 cut(s)	2839
MroXI	GAANNNNTTC	4 cut(s)	408, 1305, 1739, 1992
MslI	CAYNNNNRTG	2 cut(s)	756, 798
MspA1I	CMGCKG	1 cut(s)	1190
MspCI	CTTAAG	1 cut(s)	2195
MspI	CCGG	3 cut(s)	235, 2212, 2840
MspR9I	CCNGG	7 cut(s)	1205, 2047, 2212, 2367, 2469, 2576, 2803
Mva1269I	GAATGC	1 cut(s)	904
MvaI	CCWGG	6 cut(s)	1205, 2047, 2367, 2469, 2576, 2803
NciI	CCSGG	1 cut(s)	2212
NcoI	CCATGG	1 cut(s)	1929
NdeI	CATATG	1 cut(s)	1253
NlaIV	GGNNCC	7 cut(s)	441, 717, 1601, 1725, 1815, 2209, 2838
NmeAIII	GCCGAG	1 cut(s)	3029
NmuCI	GTSAC	3 cut(s)	286, 1703, 2479
NsiI	ATGCAT	3 cut(s)	211, 667, 703
NspI	RCATGY	4 cut(s)	209, 665, 839, 1540
NspV	TTCGAA	1 cut(s)	1638
PaeI	GCATGC	2 cut(s)	209, 1540
PaeR7I	CTCGAG	1 cut(s)	2916
PciI	ACATGT	1 cut(s)	835
PcsI	WCGNNNNNNNCGW	1 cut(s)	1960
PctI	GAATGC	1 cut(s)	904
PdmI	GAANNNNTTC	4 cut(s)	408, 1305, 1739, 1992
PfeI	GAWTC	6 cut(s)	119, 863, 1306, 2516, 2701, 3035
PfoI	TCCNGGA	1 cut(s)	2467
PleI	GAGTC	2 cut(s)	844, 3014
PpsI	GAGTC	2 cut(s)	844, 3014
PpuMI	RGGWCCY	1 cut(s)	440
PscI	ACATGT	1 cut(s)	835
PshAI	GACNNNNGTC	1 cut(s)	786
Psp124BI	GAGCTC	3 cut(s)	80, 1785, 3053
Psp5II	RGGWCCY	1 cut(s)	440
Psp6I	CCWGG	6 cut(s)	1203, 2045, 2365, 2467, 2574, 2801
PspFI	CCCAGC	2 cut(s)	938, 2861
PspGI	CCWGG	6 cut(s)	1203, 2045, 2365, 2467, 2574, 2801
PspN4I	GGNNCC	7 cut(s)	441, 717, 1601, 1725, 1815, 2209, 2838
PspPI	GGNCC	8 cut(s)	232, 440, 646, 1600, 1724, 2465, 2572, 2805
PspPPI	RGGWCCY	1 cut(s)	440
PstI	CTGCAG	1 cut(s)	673
PstNI	CAGNNNCTG	1 cut(s)	406
PsuI	RGATCY	4 cut(s)	391, 1813, 2471, 2908
PvuII	CAGCTG	1 cut(s)	1190
RsaI	GTAC	7 cut(s)	877, 920, 1698, 1858, 2079, 2452, 2561
RsaNI	GTAC	7 cut(s)	876, 919, 1697, 1857, 2078, 2451, 2560
RseI	CAYNNNNRTG	2 cut(s)	756, 798
SacI	GAGCTC	3 cut(s)	80, 1785, 3053
Sau96I	GGNCC	8 cut(s)	232, 440, 646, 1600, 1724, 2465, 2572, 2805
ScaI	AGTACT	2 cut(s)	877, 1698
SchI	GAGTC	2 cut(s)	844, 3015
ScrFI	CCNGG	7 cut(s)	1205, 2047, 2212, 2367, 2469, 2576, 2803
SduI	GDGCHC	7 cut(s)	80, 718, 1264, 1785, 1834, 2988, 3053
SfaNI	GCATC	9 cut(s)	79, 459, 674, 1056, 1705, 1738, 2275, 2283, 3053
SfcI	CTRYAG	2 cut(s)	261, 669
Sfr274I	CTCGAG	1 cut(s)	2916
SfuI	TTCGAA	1 cut(s)	1638
SinI	GGWCC	6 cut(s)	232, 440, 646, 1724, 2465, 2805
SlaI	CTCGAG	1 cut(s)	2916
SmiMI	CAYNNNNRTG	2 cut(s)	756, 798
SmlI	CTYRAG	5 cut(s)	1292, 2062, 2195, 2916, 3023
SmoI	CTYRAG	5 cut(s)	1292, 2062, 2195, 2916, 3023
SphI	GCATGC	2 cut(s)	209, 1540
SsiI	CCGC	5 cut(s)	102, 241, 971, 2247, 2681
SspI	AATATT	3 cut(s)	961, 977, 1635
SspMI	CTAG	9 cut(s)	32, 170, 596, 1094, 1619, 1982, 2054, 2117, 2633
SstI	GAGCTC	3 cut(s)	80, 1785, 3053
StyD4I	CCNGG	7 cut(s)	1203, 2045, 2210, 2365, 2467, 2574, 2801
StyI	CCWWGG	2 cut(s)	1929, 2979
TaaI	ACNGT	9 cut(s)	292, 499, 880, 2171, 2414, 2555, 2587, 2618, 2655
TaqI	TCGA	7 cut(s)	69, 122, 848, 1638, 2917, 3009, 3047
TatI	WGTACW	4 cut(s)	875, 918, 1696, 1856
TauI	GCSGC	2 cut(s)	104, 2249
TfiI	GAWTC	6 cut(s)	119, 863, 1306, 2516, 2701, 3035
TscAI	CASTG	4 cut(s)	295, 2174, 2560, 2590
TseFI	GTSAC	3 cut(s)	286, 1703, 2479
Tsp45I	GTSAC	3 cut(s)	286, 1703, 2479
TspGWI	ACGGA	1 cut(s)	776
TspRI	CASTG	4 cut(s)	295, 2174, 2560, 2590
Vha464I	CTTAAG	1 cut(s)	2195
VneI	GTGCAC	2 cut(s)	1260, 1830
VpaK11BI	GGWCC	6 cut(s)	232, 440, 646, 1724, 2465, 2805
XapI	RAATTY	7 cut(s)	195, 570, 857, 911, 965, 1851, 2663
XceI	RCATGY	4 cut(s)	209, 665, 839, 1540
XhoI	CTCGAG	1 cut(s)	2916
XmnI	GAANNNNTTC	4 cut(s)	408, 1305, 1739, 1992
XspI	CTAG	9 cut(s)	32, 170, 596, 1094, 1619, 1982, 2054, 2117, 2633
ZrmI	AGTACT	2 cut(s)	877, 1698
Zsp2I	ATGCAT	3 cut(s)	211, 667, 703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.