Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8350293.1

Orthogroup ID

OG0012378

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 923

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8350293.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 455 bp

atgtctgaaattgcaaatcctaatgaagagtgggctttgaaaagtcagacagcagcacttgttgctgagatagttagaagtgaaggagtagatctctggcaggaactgcttccaactctggtttccttatctgcaaagggtcctatacaagctgagttggtctccatgatgctgaggtggcttcctgaagacattactgttcacaatgaagatttggaagctgatcggagaaggctattgttgcgtgggctgaccctatccttacctgaaattttacctctattatacaacttactagagaggcattttggagctgccatgagtgaagcagggaaacaacaagtggaccttgcaaaacaacatgcatctgcagtaacagctactttaaatgctgttaatgcatattctgaatgggctccattgcctgatcttgctaaatatggtataattcatgg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005049 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006810 GO:0006913 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009909 GO:0009910 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0010016 GO:0015931 GO:0022622 GO:0031074 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033157 GO:0042565 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046822 GO:0046825 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048580 GO:0048581 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0051049 GO:0051093 GO:0051168 GO:0051169 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051641 GO:0051649 GO:0060341 GO:0061716 GO:0065001 GO:0065007 GO:0070201 GO:0071702 GO:0071705 GO:0090087 GO:0097064 GO:0097159 GO:0099402 GO:0140104 GO:0140142 GO:1901363 GO:1903827 GO:1905392 GO:1990428 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Xpo1

Protein Analysis

152

Amino Acids

16.79

Weight (kDa)

4.92

Isoelectric Point (pI)

55.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05040 AT3G05040
fragaria_vesca	FvH4_6g04110
malus_domestica	MD04G1216400.v1.1 MD12G1232900.v1.1
prunus_persica	Prupe.6G336100_v2.0.a1
pyrus_communis	pycom04g19230 pycom12g21520
rosa_chinensis	RchiOBHm_Chr3g0452661
rosa_multiflora	Rmu_co8350293.1_g000001 Rmu_sc0034779.1_g000001 Rmu_ssc0000156.1_g000010
rosa_roxburghii	Rroxscaffold_6G00429700
rosa_rugosa	Rorug02G0642500.1
rosa_samantha	Rh3AG044700 Rh3BG047000 Rh3CG045500 Rh3DG045900
rosa_wichuraiana	Rw3G003490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	40
AjuI	GAANNNNNNNTTGG	2 cut(s)	106, 138
AluBI	AGCT	4 cut(s)	152, 221, 314, 380
AluI	AGCT	4 cut(s)	152, 221, 314, 380
Alw26I	GTCTC	1 cut(s)	166
AlwNI	CAGNNNCTG	1 cut(s)	106
ApeKI	GCWGC	2 cut(s)	53, 314
ApoI	RAATTY	1 cut(s)	270
Asp700I	GAANNNNTTC	1 cut(s)	108
AspS9I	GGNCC	2 cut(s)	140, 346
AvaII	GGWCC	2 cut(s)	140, 346
BanII	GRGCYC	1 cut(s)	418
BbsI	GAAGAC	1 cut(s)	195
BbvCI	CCTCAGC	1 cut(s)	173
BbvI	GCAGC	2 cut(s)	65, 301
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	1 cut(s)	296
BfmI	CTRYAG	1 cut(s)	369
BglII	AGATCT	1 cut(s)	91
BisI	GCNGC	2 cut(s)	54, 315
BlsI	GCNGC	2 cut(s)	55, 316
Bme18I	GGWCC	2 cut(s)	140, 346
BmgT120I	GGNCC	2 cut(s)	140, 346
BmiI	GGNNCC	2 cut(s)	141, 417
BmsI	GCATC	2 cut(s)	159, 374
BpiI	GAAGAC	1 cut(s)	195
BplI	GAGNNNNNCTC	4 cut(s)	78, 110, 146, 178
Bpu10I	CCTNAGC	1 cut(s)	173
BsaI	GGTCTC	1 cut(s)	166
Bse3DI	GCAATG	1 cut(s)	419
BseMI	GCAATG	1 cut(s)	419
BseMII	CTCAG	3 cut(s)	57, 144, 164
BseXI	GCAGC	2 cut(s)	65, 301
BsmAI	GTCTC	1 cut(s)	166
Bso31I	GGTCTC	1 cut(s)	166
Bsp1286I	GDGCHC	1 cut(s)	418
Bsp143I	GATC	3 cut(s)	91, 223, 427
BspCNI	CTCAG	3 cut(s)	58, 145, 165
BspLI	GGNNCC	2 cut(s)	141, 417
BspMAI	CTGCAG	1 cut(s)	373
BspTNI	GGTCTC	1 cut(s)	166
BsrDI	GCAATG	1 cut(s)	419
BssMI	GATC	3 cut(s)	91, 223, 427
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	21
BstAPI	GCANNNNNTGC	2 cut(s)	62, 106
BstDEI	CTNAG	3 cut(s)	66, 153, 173
BstKTI	GATC	3 cut(s)	94, 226, 430
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	3 cut(s)	91, 223, 427
BstMWI	GCNNNNNNNGC	6 cut(s)	62, 106, 178, 241, 377, 398
BstNSI	RCATGY	1 cut(s)	365
BstSFI	CTRYAG	1 cut(s)	369
BstV1I	GCAGC	2 cut(s)	65, 301
BstV2I	GAAGAC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	106
Cfr13I	GGNCC	2 cut(s)	140, 346
CviAII	CATG	4 cut(s)	166, 319, 362, 452
CviJI	RGCY	9 cut(s)	35, 152, 181, 221, 235, 250, 314, 380, 416
CviKI_1	RGCY	9 cut(s)	35, 152, 181, 221, 235, 250, 314, 380, 416
DdeI	CTNAG	3 cut(s)	66, 153, 173
DpnI	GATC	3 cut(s)	93, 225, 429
DpnII	GATC	3 cut(s)	91, 223, 427
DraI	TTTAAA	1 cut(s)	387
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	166
Eco47I	GGWCC	2 cut(s)	140, 346
Eco57I	CTGAAG	1 cut(s)	207
EcoO109I	RGGNCCY	1 cut(s)	140
EcoT22I	ATGCAT	2 cut(s)	367, 403
EcoT38I	GRGCYC	1 cut(s)	418
FaeI	CATG	4 cut(s)	169, 322, 365, 455
FaiI	YATR	9 cut(s)	146, 167, 286, 320, 363, 403, 441, 446, 453
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FatI	CATG	4 cut(s)	165, 318, 361, 451
Fnu4HI	GCNGC	2 cut(s)	54, 315
FriOI	GRGCYC	1 cut(s)	418
Fsp4HI	GCNGC	2 cut(s)	54, 315
FspBI	CTAG	1 cut(s)	296
GluI	GCNGC	2 cut(s)	54, 315
Hin1II	CATG	4 cut(s)	169, 322, 365, 455
Hpy166II	GTNNAC	2 cut(s)	202, 346
Hpy188I	TCNGA	4 cut(s)	7, 48, 228, 409
Hpy188III	TCNNGA	1 cut(s)	185
Hpy8I	GTNNAC	2 cut(s)	202, 346
HpyAV	CCTTC	2 cut(s)	77, 225
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	6 cut(s)	14, 134, 353, 365, 371, 401
HpyF10VI	GCNNNNNNNGC	6 cut(s)	62, 106, 178, 241, 377, 398
HpyF3I	CTNAG	3 cut(s)	66, 153, 173
Hsp92II	CATG	4 cut(s)	169, 322, 365, 455
Kzo9I	GATC	3 cut(s)	91, 223, 427
LmnI	GCTCC	2 cut(s)	311, 421
LpnPI	CCDG	7 cut(s)	82, 86, 104, 198, 279, 315, 438
Lsp1109I	GCAGC	2 cut(s)	65, 301
LweI	GCATC	2 cut(s)	159, 374
MaeI	CTAG	1 cut(s)	296
MaeIII	GTNAC	1 cut(s)	373
MalI	GATC	3 cut(s)	93, 225, 429
MboI	GATC	3 cut(s)	91, 223, 427
MboII	GAAGA	3 cut(s)	38, 200, 221
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	1 cut(s)	418
MluCI	AATT	3 cut(s)	9, 270, 447
MmeI	TCCRAC	1 cut(s)	137
MnlI	CCTC	3 cut(s)	168, 288, 294
Mph1103I	ATGCAT	2 cut(s)	367, 403
MroXI	GAANNNNTTC	1 cut(s)	108
MseI	TTAA	2 cut(s)	386, 396
MwoI	GCNNNNNNNGC	6 cut(s)	62, 106, 178, 241, 377, 398
NdeII	GATC	3 cut(s)	91, 223, 427
NlaIII	CATG	4 cut(s)	169, 322, 365, 455
NlaIV	GGNNCC	2 cut(s)	141, 417
NsiI	ATGCAT	2 cut(s)	367, 403
NspI	RCATGY	1 cut(s)	365
PdmI	GAANNNNTTC	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	55, 316
PpuMI	RGGWCCY	1 cut(s)	140
Psp5II	RGGWCCY	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	141, 417
PspPI	GGNCC	2 cut(s)	140, 346
PspPPI	RGGWCCY	1 cut(s)	140
PstI	CTGCAG	1 cut(s)	373
PstNI	CAGNNNCTG	1 cut(s)	106
PsuI	RGATCY	1 cut(s)	91
SaqAI	TTAA	2 cut(s)	386, 396
SatI	GCNGC	2 cut(s)	54, 315
Sau3AI	GATC	3 cut(s)	91, 223, 427
Sau96I	GGNCC	2 cut(s)	140, 346
SduI	GDGCHC	1 cut(s)	418
SetI	ASST	8 cut(s)	154, 179, 223, 268, 280, 316, 351, 382
SfaNI	GCATC	2 cut(s)	159, 374
SfcI	CTRYAG	1 cut(s)	369
SinI	GGWCC	2 cut(s)	140, 346
Sse9I	AATT	3 cut(s)	9, 270, 447
SspMI	CTAG	1 cut(s)	296
TaaI	ACNGT	1 cut(s)	199
TasI	AATT	3 cut(s)	9, 270, 447
Tru1I	TTAA	2 cut(s)	386, 396
Tru9I	TTAA	2 cut(s)	386, 396
TseI	GCWGC	2 cut(s)	53, 314
TspDTI	ATGAA	3 cut(s)	39, 222, 440
VpaK11BI	GGWCC	2 cut(s)	140, 346
XapI	RAATTY	1 cut(s)	270
XceI	RCATGY	1 cut(s)	365
XmnI	GAANNNNTTC	1 cut(s)	108
XspI	CTAG	1 cut(s)	296
Zsp2I	ATGCAT	2 cut(s)	367, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.