Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0012378

Physical Location & Seq

Genomic Coordinates Forward (+)

49916139 .. 49925718

Gene Structure 9580 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00429700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3624 bp

ATGGAGGCGAGCAACAATAGCAGCAGCAGCAACCTAGCTGGCAGCGTTGCCCAAGCCATTGCCGTCTCTCTCGACTGGAGCTCCACTCCCGACGCTCGCAAAGCCGCCGTGGCTTTCCTTGAATCGATTAAAACTGGAGATGTGCGTGTTTTGGCAAATACAGCGTTCCTTCTAGTGAAAAAGGATTGGTCTTCTGAAATTCGGTTGCATGCATTTAAAATGTTGCAGCATTTGGTCCGGTTGCGGTGGGAGGAACTAAACCCTACAGAACATAGAAACTTTGCTAATGTCACTGTTGATCTAATGTCTGAAATTGCAAATCCTAATGAAGAGTGGGCTTTGAAAAGTCAGACAGCAGCACTTGTTGCTGAGATAGTTAGAAGTGAAGGAGTAGATCTCTGGCAGGAACTGCTTCCAACTCTGGTTTCCTTATCTGCAAAGGGTCCTATACAAGCTGAGTTGGTCTCCATGATGCTGAGGTGGCTTCCTGAAGACATTACTGTTCACAATGAAGATTTGGAAGCTGATCGGAGAAGGCTATTGTTGCGTGGGCTGACCCTATCCTTACCTGAAATTTTACCTCTATTATACAACCTACTAGAGAGGCATTTTGGAGCGGCCATGAGTGAAGCAGGGAAACAACAAGTGGACCTTGCAAAACAACATGCATCTGCAGTAACAGCTACTTTAAATGCTGTTAATGCATATTCTGAATGGGCTCCATTGCCTGATCTTGCTAAATATGGTATAATTCATGGGTGTGGTTTCTTACTTTCTTCACCTGACTTCCGTCTTCATGCTTGTGAGTTTTTCAAACTTGTTTCCCCAAGAAAGAGACATGTTGATACATCGACTCCTGAATTTGATTCTGCAATGAGTACTGTCTTTCATATTTTAATGAATGCCTCCAAAGAATTTTTGTACAGCTCTGGCGTCAATGCTGGGGTGATTGATGAAAGCAATATTGAATTTGCGGAATATTTATGTGAAAGTATGGTGTCTTTGGGTTCAACAAACTTACAATGTATCGTGGGTGATAGCACCACATTACCTCTTTATTTACAACAGATGCTCGGGTTTTTTCAACATCATAAGCTAATTCTTCATTTTCAATCTCTCCATTTTTGGCTGGCACTTATGAGAGACTTAATGTCTAAGCCACCTAAGTCAAAGGTGGCTGCACACTCATCAGCTGATGGTTCTGACCAGGCTGATAAGGAAAAGCAGAAGATTTTGAGTTTTGTGAACGATGACATATGTAGTGCACTTCTGGATGTATCTTTCCAACGATTGCTCAAGAGAGAAAAGATTCTTCATGGAACATCAATCTCTTTGGGGTCATTGGAGTTATGGAGTGATGATGTTGACAACAAAGGAACTTTCGGCCAGTATCGCTCAAAGCTGTTAGAACTGATCAAGTTTGTTACCTCATACAAGCCTGTTATAGCTGGTGCTAAGGTTTCTGAAAGAATTGATACAATCATTAAAAGCCTCTTACTTTCTCCAATGCCTGCTCAGGACTTAGCTGTGATGGAAAGCATGCAGTCGGCTCTTGAAAATGTTGTAAGCACTATTTTTGATAGATCAAATGAAATTGGTGGGGGCCATTCTGAAGTTCAACTAGGACTATGCAGAATATTCGAAGGTTTGCTTCAGCAACTTCTCTCTTTGAAGTGGACTGAGCCAGTCCTTGTGGAAGTACTCGGTCACTACTTGGATGCAATGGGTCCATTTTTGAACTATTTCCCAGATGCAGCAGGCAGCGTCATCAATAAACTATTTGAGCTCCTAAATTCACTCCCTTTTGCTGTTAAGGATCCCTCTACAAGTAGTGCACGATATGCAAGGTTGCAAATTTGTACATCGTTTATTCGTATAGCAAAAACTGCTGACAAAAGTATTCTTCCTCACATGAAGGGTATAGCTGATACCATGGCATATTTGCAAAAGGAAGGTCGTTTACTTCGTGGTGAACATAATCTTCTAGGCGAAGCATTTCTTGTCATGGCTTCTGCTGCTGGATTTCAACAGCAGCAAGAAGTTTTGGCCTGGTTACTAGAACCCTTGAGCCAGCAATGGGTACAGATAGAGTGGCAAAATAATTATTTATCTGAACCACTAGGTCTTGTTCGTTTGTGCATGGAGACCCCAACTATGTGGTCAGTTTTCCACTGTATCACATTCTTTGAGAAGGCACTTAAGAGAAGTGGAACCCGGAAAACACATTTGAGTACACAAAACAACTCAGCTGCAAGTTCTACTCCCTTGCATCCTATGGCTTCTCATCTATCATGGATGCTGCCACCTCTTCCCAAACTTCTTCGTGCCATACATTCCCTTTGGTCTCCATCTGTATCTCAAAATCTACCTGGAGAAATGAAAGCTGCAATGACCATGAGCGATGTTGAGCAATACAGTCTTCTTGGTGAAGGAAACCCTAAATTGTCAAAGGGTACATTAACCTCTGGTCCTGGATCTCTTGTCACCATGAGTAAGGAAGGATATACAGAGCCAAATGAATCGGATATACGAAATTGGATGAAAGGGATCAGAGACAGTGGGTACAATGTATTGGGCCTGGCAACCACTGTTGGGGACACATTCTACAAATGTCTGGACAGTCATTCTGTTGCTCTAGCTTTGGTAGAGAATATACAGTCAATGGAATTCAGGCATATAAGACCGCTTGTTCATTCAGTTTTGATTCCTTTGGTTAAAAATTGCCCTGTGGATTTGTGGGAGGTATGGCTGGAAAAGCTCTTGCACCCATTATTTCTACACTCCCATCAGGCTCTTAGTTGCTCCTGGTCCAGTCTTCTACAAGAAGGTAGAGCAAAGGTTCCGGATGTCCATGCCATACTTGCTGGGACAGACTTAAAAGTGGAAGTAATGGAAGAAAAGCTACTAAGAGATCTTACTCGAGAGATTTGTTCACTGCTCTCTGCCATTGCTTTGCCACAGCTAAATACTGGCCTTCCATCCTTGGAGCACTCTGGGCAAATCAGCCGAGTCGATCTATCTTCACTCAAGTCTTTAGATTCTTTTGCATCAAGCTCTATGGTTAGTTTCATTTTGAAGCACCAAGGTCTTGCCCTTCCAGCACTGCAGATATGTTTAGAAGCTTTTACATGGACAGATGGTGATGCCATGACAAAAGTTTCTTCCTTTTGTGGTGCTTTGGTTGTTCTAGCTATATTCACAAATAGTGTGGAACTCCAACAGTTTGTTTGTAAGGATCTCTTTTCTGCAATTATCCAAGGTTTAGCCCTTGAATCAAATGCTTTCATCAGTGCTGATTTGGTTGGTCACTGCCGTGACATTTACATATATCTTTGTGATAGACATCCCGCTCCTAGGCAGATTCTGCTCTCACTTCCCTGCATCAAACAGCATGATTTGCTTGCTTTTGAAGAAGCTTTGACGAAGACAGCTAGTCCTAAAGAGCAAAAACAATATATGAAAAGCCTGCTATTATTAGCTACCGGAAACAAGTTAAAAGCACTTGTTGCTCAGAAAACTGTAAATGTTATAACAAATGTATCAACAAAGCCTCGCAACACAGTCAACGTTGCAGAAACCAGAGTTGATGAGGGGGAAGTTATTGGACTGGCACCCCTATCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005049 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006810 GO:0006913 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009909 GO:0009910 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0010016 GO:0015931 GO:0022622 GO:0031074 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033157 GO:0042565 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046822 GO:0046825 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048580 GO:0048581 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0051049 GO:0051093 GO:0051168 GO:0051169 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051641 GO:0051649 GO:0060341 GO:0061716 GO:0065001 GO:0065007 GO:0070201 GO:0071702 GO:0071705 GO:0090087 GO:0097064 GO:0097159 GO:0099402 GO:0140104 GO:0140142 GO:1901363 GO:1903827 GO:1905392 GO:1990428 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Xpo1

Protein Analysis

1207

Amino Acids

133.61

Weight (kDa)

6.06

Isoelectric Point (pI)

41.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Xpo1	PF08389	112 - 270	4.3e-25	Exportin 1-like protein
Exportin-5	PF19273	319 - 1172	0.0	Exportin-5 family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05040 AT3G05040
fragaria_vesca	FvH4_6g04110
malus_domestica	MD04G1216400.v1.1 MD12G1232900.v1.1
prunus_persica	Prupe.6G336100_v2.0.a1
pyrus_communis	pycom04g19230 pycom12g21520
rosa_chinensis	RchiOBHm_Chr3g0452661
rosa_multiflora	Rmu_co8350293.1_g000001 Rmu_sc0034779.1_g000001 Rmu_ssc0000156.1_g000010
rosa_roxburghii	Rroxscaffold_6G00429700
rosa_rugosa	Rorug02G0642500.1
rosa_samantha	Rh3AG044700 Rh3BG047000 Rh3CG045500 Rh3DG045900
rosa_wichuraiana	Rw3G003490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	3530
AccB1I	GGYRCC	1 cut(s)	3610
AccBSI	CCGCTC	2 cut(s)	617, 3350
AccIII	TCCGGA	1 cut(s)	2842
AciI	CCGC	6 cut(s)	105, 244, 617, 974, 2684, 3348
AclI	AACGTT	1 cut(s)	3567
AclWI	GGATC	5 cut(s)	1811, 1824, 2482, 2555, 3243
AcoI	YGGCCR	2 cut(s)	618, 1384
AcsI	RAATTY	8 cut(s)	198, 573, 860, 914, 968, 1792, 1854, 2666
AcuI	CTGAAG	3 cut(s)	510, 1632, 1637
AcyI	GRCGYC	1 cut(s)	933
AfaI	GTAC	8 cut(s)	880, 923, 1701, 1861, 2082, 2233, 2455, 2564
AfiI	CCNNNNNNNGG	3 cut(s)	2077, 2592, 3354
AflII	CTTAAG	1 cut(s)	2198
AflIII	ACRYGT	1 cut(s)	838
AhdI	GACNNNNNGTC	2 cut(s)	1150, 3432
AjnI	CCWGG	6 cut(s)	1206, 2048, 2368, 2470, 2577, 2804
AjuI	GAANNNNNNNTTGG	2 cut(s)	409, 441
AleI	CACNNNNGTG	1 cut(s)	3312
Alw21I	GWGCWC	5 cut(s)	83, 1267, 1788, 1837, 2991
Alw26I	GTCTC	7 cut(s)	70, 469, 829, 1137, 2138, 2349, 2547
Alw44I	GTGCAC	2 cut(s)	1263, 1833
AlwI	GGATC	5 cut(s)	1811, 1824, 2482, 2555, 3243
AlwNI	CAGNNNCTG	2 cut(s)	409, 3364
Ama87I	CYCGRG	2 cut(s)	1073, 2919
Aor13HI	TCCGGA	1 cut(s)	2842
AoxI	GGCC	6 cut(s)	618, 1384, 1603, 2046, 2575, 2971
ApaLI	GTGCAC	2 cut(s)	1263, 1833
ApoI	RAATTY	8 cut(s)	198, 573, 860, 914, 968, 1792, 1854, 2666
ArsI	GACNNNNNNTTYG	2 cut(s)	1939, 1971
Asp700I	GAANNNNTTC	4 cut(s)	411, 1308, 1742, 1995
AspA2I	CCTAGG	1 cut(s)	3353
AspS9I	GGNCC	8 cut(s)	235, 443, 649, 1603, 1727, 2468, 2575, 2808
AsuC2I	CCSGG	1 cut(s)	2215
AsuHPI	GGTGA	7 cut(s)	771, 958, 1046, 1982, 2438, 2476, 3152
AsuII	TTCGAA	1 cut(s)	1641
AvaI	CYCGRG	2 cut(s)	1073, 2919
AvaII	GGWCC	6 cut(s)	235, 443, 649, 1727, 2468, 2808
AvrII	CCTAGG	1 cut(s)	3353
BaeGI	GKGCMC	2 cut(s)	1267, 1837
BaeI	ACNNNNGTAYC	2 cut(s)	3522, 3555
BamHI	GGATCC	1 cut(s)	1816
BanI	GGYRCC	1 cut(s)	3610
BanII	GRGCYC	3 cut(s)	83, 721, 1788
BarI	GAAGNNNNNNTAC	4 cut(s)	1944, 1976, 2886, 2918
BbsI	GAAGAC	6 cut(s)	183, 498, 785, 2411, 2807, 3431
Bbv12I	GWGCWC	5 cut(s)	83, 1267, 1788, 1837, 2991
BbvCI	CCTCAGC	1 cut(s)	476
BccI	CCATC	6 cut(s)	1190, 1525, 2356, 2793, 2986, 3131
BceAI	ACGGC	3 cut(s)	47, 92, 3297
BcgI	CGANNNNNNTGC	2 cut(s)	1621, 1655
BciT130I	CCWGG	6 cut(s)	1208, 2050, 2370, 2472, 2579, 2806
BclI	TGATCA	1 cut(s)	1413
BcnI	CCSGG	1 cut(s)	2215
BcoDI	GTCTC	7 cut(s)	70, 469, 829, 1137, 2138, 2349, 2547
BfmI	CTRYAG	3 cut(s)	264, 672, 3104
BfrI	CTTAAG	1 cut(s)	2198
BglI	GCCNNNNNGGC	1 cut(s)	110
BglII	AGATCT	2 cut(s)	394, 2911
BlnI	CCTAGG	1 cut(s)	3353
BmcAI	AGTACT	2 cut(s)	880, 1701
Bme1390I	CCNGG	7 cut(s)	1208, 2050, 2215, 2370, 2472, 2579, 2806
Bme18I	GGWCC	6 cut(s)	235, 443, 649, 1727, 2468, 2808
BmeRI	GACNNNNNGTC	2 cut(s)	1150, 3432
BmeT110I	CYCGRG	2 cut(s)	1073, 2919
BmgT120I	GGNCC	8 cut(s)	235, 443, 649, 1603, 1727, 2468, 2575, 2808
BmiI	GGNNCC	8 cut(s)	444, 720, 1604, 1728, 1818, 2212, 2841, 3612
BmrFI	CCNGG	7 cut(s)	1208, 2050, 2215, 2370, 2472, 2579, 2806
BoxI	GACNNNNGTC	1 cut(s)	789
BpiI	GAAGAC	6 cut(s)	183, 498, 785, 2411, 2807, 3431
BplI	GAGNNNNNCTC	6 cut(s)	70, 102, 381, 413, 449, 481
BpmI	CTGGAG	3 cut(s)	97, 156, 2391
Bpu10I	CCTNAGC	3 cut(s)	476, 1455, 1515
Bpu14I	TTCGAA	1 cut(s)	1641
BpuEI	CTTGAG	3 cut(s)	1280, 2086, 3011
BpuMI	CCSGG	1 cut(s)	2215
Bsa29I	ATCGAT	1 cut(s)	125
BsaBI	GATNNNNATC	1 cut(s)	3342
BsaHI	GRCGYC	1 cut(s)	933
BsaI	GGTCTC	3 cut(s)	469, 2138, 2349
BsaJI	CCNNGG	6 cut(s)	108, 1932, 2982, 3082, 3256, 3353
BsaWI	WCCGGW	3 cut(s)	237, 2842, 3482
BsaXI	ACNNNNNCTCC	4 cut(s)	65, 95, 838, 868
Bsc4I	CCNNNNNNNGG	3 cut(s)	2077, 2592, 3354
Bse1I	ACTGG	7 cut(s)	80, 139, 1387, 1685, 2811, 2974, 3612
Bse3DI	GCAATG	7 cut(s)	57, 722, 879, 1728, 2081, 2394, 2946
Bse8I	GATNNNNATC	1 cut(s)	3342
BseAI	TCCGGA	1 cut(s)	2842
BseBI	CCWGG	6 cut(s)	1208, 2050, 2370, 2472, 2579, 2806
BseCI	ATCGAT	1 cut(s)	125
BseDI	CCNNGG	6 cut(s)	108, 1932, 2982, 3082, 3256, 3353
BseGI	GGATG	8 cut(s)	1279, 1723, 2269, 2301, 2544, 2851, 2978, 3343
BseJI	GATNNNNATC	1 cut(s)	3342
BseLI	CCNNNNNNNGG	3 cut(s)	2077, 2592, 3354
BseMI	GCAATG	7 cut(s)	57, 722, 879, 1728, 2081, 2394, 2946
BseMII	CTCAG	7 cut(s)	360, 447, 467, 1529, 1671, 2259, 3524
BseNI	ACTGG	7 cut(s)	80, 139, 1387, 1685, 2811, 2974, 3612
BseSI	GKGCMC	2 cut(s)	1267, 1837
BseYI	CCCAGC	2 cut(s)	941, 2864
BsgI	GTGCAG	1 cut(s)	1164
BshFI	GGCC	6 cut(s)	620, 1386, 1605, 2048, 2577, 2973
BshNI	GGYRCC	1 cut(s)	3610
BshVI	ATCGAT	1 cut(s)	125
BsiHKAI	GWGCWC	5 cut(s)	83, 1267, 1788, 1837, 2991
BsiHKCI	CYCGRG	2 cut(s)	1073, 2919
BsiSI	CCGG	4 cut(s)	238, 2215, 2843, 3483
BslFI	GGGAC	2 cut(s)	2609, 2881
BslI	CCNNNNNNNGG	3 cut(s)	2077, 2592, 3354
BsmAI	GTCTC	7 cut(s)	70, 469, 829, 1137, 2138, 2349, 2547
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	2 cut(s)	2609, 2881
BsmI	GAATGC	1 cut(s)	907
BsnI	GGCC	6 cut(s)	620, 1386, 1605, 2048, 2577, 2973
Bso31I	GGTCTC	3 cut(s)	469, 2138, 2349
BsoBI	CYCGRG	2 cut(s)	1073, 2919
Bsp119I	TTCGAA	1 cut(s)	1641
Bsp1286I	GDGCHC	6 cut(s)	83, 721, 1267, 1788, 1837, 2991
Bsp13I	TCCGGA	1 cut(s)	2842
Bsp1407I	TGTACA	2 cut(s)	921, 1859
Bsp19I	CCATGG	1 cut(s)	1932
BspACI	CCGC	6 cut(s)	105, 244, 617, 974, 2684, 3348
BspANI	GGCC	6 cut(s)	620, 1386, 1605, 2048, 2577, 2973
BspCNI	CTCAG	7 cut(s)	361, 448, 468, 1528, 1672, 2258, 3523
BspDI	ATCGAT	1 cut(s)	125
BspEI	TCCGGA	1 cut(s)	2842
BspHI	TCATGA	1 cut(s)	3620
BspLI	GGNNCC	8 cut(s)	444, 720, 1604, 1728, 1818, 2212, 2841, 3612
BspMAI	CTGCAG	2 cut(s)	676, 3108
BspPI	GGATC	5 cut(s)	1811, 1824, 2482, 2555, 3243
BspT104I	TTCGAA	1 cut(s)	1641
BspT107I	GGYRCC	1 cut(s)	3610
BspTI	CTTAAG	1 cut(s)	2198
BspTNI	GGTCTC	3 cut(s)	469, 2138, 2349
BsrBI	CCGCTC	2 cut(s)	617, 3350
BsrDI	GCAATG	7 cut(s)	57, 722, 879, 1728, 2081, 2394, 2946
BsrGI	TGTACA	2 cut(s)	921, 1859
BsrI	ACTGG	7 cut(s)	80, 139, 1387, 1685, 2811, 2974, 3612
BssECI	CCNNGG	6 cut(s)	108, 1932, 2982, 3082, 3256, 3353
BssNI	GRCGYC	1 cut(s)	933
BssT1I	CCWWGG	5 cut(s)	1932, 2982, 3082, 3256, 3353
Bst2UI	CCWGG	6 cut(s)	1208, 2050, 2370, 2472, 2579, 2806
Bst6I	CTCTTC	2 cut(s)	324, 2313
BstACI	GRCGYC	1 cut(s)	933
BstAFI	CTTAAG	1 cut(s)	2198
BstAPI	GCANNNNNTGC	7 cut(s)	365, 409, 1841, 1886, 3364, 3397, 3506
BstAUI	TGTACA	2 cut(s)	921, 1859
BstBI	TTCGAA	1 cut(s)	1641
BstDSI	CCRYGG	2 cut(s)	108, 1932
BstF5I	GGATG	8 cut(s)	1279, 1723, 2269, 2301, 2544, 2851, 2978, 3343
BstMAI	GTCTC	7 cut(s)	70, 469, 829, 1137, 2138, 2349, 2547
BstNI	CCWGG	6 cut(s)	1208, 2050, 2370, 2472, 2579, 2806
BstNSI	RCATGY	4 cut(s)	212, 668, 842, 1543
BstPAI	GACNNNNGTC	1 cut(s)	789
BstSCI	CCNGG	7 cut(s)	1206, 2048, 2213, 2368, 2470, 2577, 2804
BstSFI	CTRYAG	3 cut(s)	264, 672, 3104
BstSLI	GKGCMC	2 cut(s)	1267, 1837
BstV2I	GAAGAC	6 cut(s)	183, 498, 785, 2411, 2807, 3431
BstX2I	RGATCY	5 cut(s)	394, 1816, 2474, 2911, 3235
BstXI	CCANNNNNNTGG	1 cut(s)	2157
BstYI	RGATCY	5 cut(s)	394, 1816, 2474, 2911, 3235
Bsu15I	ATCGAT	1 cut(s)	125
BsuRI	GGCC	6 cut(s)	620, 1386, 1605, 2048, 2577, 2973
BsuTUI	ATCGAT	1 cut(s)	125
BtgI	CCRYGG	2 cut(s)	108, 1932
BtgZI	GCGATG	1 cut(s)	2415
BtsCI	GGATG	8 cut(s)	1279, 1723, 2269, 2301, 2544, 2851, 2978, 3343
BtsI	GCAGTG	3 cut(s)	2933, 3101, 3307
BtsIMutI	CAGTG	8 cut(s)	291, 2170, 2563, 2586, 2933, 3101, 3295, 3307
CaiI	CAGNNNCTG	2 cut(s)	409, 3364
CciI	TCATGA	1 cut(s)	3620
Cfr13I	GGNCC	8 cut(s)	235, 443, 649, 1603, 1727, 2468, 2575, 2808
ClaI	ATCGAT	1 cut(s)	125
CseI	GACGC	3 cut(s)	101, 922, 1753
Csp6I	GTAC	8 cut(s)	879, 922, 1700, 1860, 2081, 2232, 2454, 2563
CspCI	CAANNNNNGTGG	2 cut(s)	3189, 3224
CviQI	GTAC	8 cut(s)	879, 922, 1700, 1860, 2081, 2232, 2454, 2563
DraI	TTTAAA	2 cut(s)	217, 690
DriI	GACNNNNNGTC	2 cut(s)	1150, 3432
EaeI	YGGCCR	2 cut(s)	618, 1384
Eam1104I	CTCTTC	2 cut(s)	324, 2313
Eam1105I	GACNNNNNGTC	2 cut(s)	1150, 3432
EarI	CTCTTC	2 cut(s)	324, 2313
Ecl136II	GAGCTC	2 cut(s)	81, 1786
Eco130I	CCWWGG	5 cut(s)	1932, 2982, 3082, 3256, 3353
Eco24I	GRGCYC	3 cut(s)	83, 721, 1788
Eco31I	GGTCTC	3 cut(s)	469, 2138, 2349
Eco47I	GGWCC	6 cut(s)	235, 443, 649, 1727, 2468, 2808
Eco53kI	GAGCTC	2 cut(s)	81, 1786
Eco57I	CTGAAG	3 cut(s)	510, 1632, 1637
Eco88I	CYCGRG	2 cut(s)	1073, 2919
EcoICRI	GAGCTC	2 cut(s)	81, 1786
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRI	GAATTC	1 cut(s)	2666
EcoRII	CCWGG	6 cut(s)	1206, 2048, 2368, 2470, 2577, 2804
EcoT14I	CCWWGG	5 cut(s)	1932, 2982, 3082, 3256, 3353
EcoT22I	ATGCAT	3 cut(s)	214, 670, 706
EcoT38I	GRGCYC	3 cut(s)	83, 721, 1788
ErhI	CCWWGG	5 cut(s)	1932, 2982, 3082, 3256, 3353
Esp3I	CGTCTC	1 cut(s)	70
FalI	AAGNNNNNCTT	8 cut(s)	636, 668, 1635, 1667, 1983, 2015, 3224, 3256
FaqI	GGGAC	2 cut(s)	2609, 2881
FauI	CCCGC	1 cut(s)	3355
FauNDI	CATATG	1 cut(s)	1256
FbaI	TGATCA	1 cut(s)	1413
FokI	GGATG	8 cut(s)	1286, 1730, 2256, 2308, 2551, 2858, 2965, 3330
FriOI	GRGCYC	3 cut(s)	83, 721, 1788
GsaI	CCCAGC	2 cut(s)	945, 2868
GsuI	CTGGAG	3 cut(s)	97, 156, 2391
HaeIII	GGCC	6 cut(s)	620, 1386, 1605, 2048, 2577, 2973
HapII	CCGG	4 cut(s)	238, 2215, 2843, 3483
HgaI	GACGC	3 cut(s)	101, 922, 1753
Hin1I	GRCGYC	1 cut(s)	933
HincII	GTYRAC	2 cut(s)	1366, 3565
HindII	GTYRAC	2 cut(s)	1366, 3565
HindIII	AAGCTT	2 cut(s)	3120, 3414
HpaII	CCGG	4 cut(s)	238, 2215, 2843, 3483
HphI	GGTGA	7 cut(s)	771, 958, 1046, 1982, 2438, 2476, 3152
Hpy99I	CGWCG	1 cut(s)	95
HpyCH4IV	ACGT	1 cut(s)	3567
HpySE526I	ACGT	1 cut(s)	3567
Hsp92I	GRCGYC	1 cut(s)	933
Kpn2I	TCCGGA	1 cut(s)	2842
Ksp22I	TGATCA	1 cut(s)	1413
LmnI	GCTCC	8 cut(s)	78, 86, 614, 724, 1791, 2807, 2986, 3355
MaeII	ACGT	1 cut(s)	3567
MaeIII	GTNAC	8 cut(s)	289, 676, 1423, 1706, 2052, 2482, 3305, 3314
MbiI	CCGCTC	2 cut(s)	617, 3350
MflI	RGATCY	5 cut(s)	394, 1816, 2474, 2911, 3235
MhlI	GDGCHC	6 cut(s)	83, 721, 1267, 1788, 1837, 2991
MlyI	GAGTC	2 cut(s)	847, 3018
MmeI	TCCRAC	3 cut(s)	440, 1309, 3241
Mph1103I	ATGCAT	3 cut(s)	214, 670, 706
MroI	TCCGGA	1 cut(s)	2842
MroXI	GAANNNNTTC	4 cut(s)	411, 1308, 1742, 1995
MslI	CAYNNNNRTG	3 cut(s)	759, 801, 3312
MspA1I	CMGCKG	2 cut(s)	1193, 2249
MspCI	CTTAAG	1 cut(s)	2198
MspI	CCGG	4 cut(s)	238, 2215, 2843, 3483
MspR9I	CCNGG	7 cut(s)	1208, 2050, 2215, 2370, 2472, 2579, 2806
Mva1269I	GAATGC	1 cut(s)	907
MvaI	CCWGG	6 cut(s)	1208, 2050, 2370, 2472, 2579, 2806
NciI	CCSGG	1 cut(s)	2215
NcoI	CCATGG	1 cut(s)	1932
NdeI	CATATG	1 cut(s)	1256
NlaIV	GGNNCC	8 cut(s)	444, 720, 1604, 1728, 1818, 2212, 2841, 3612
NmeAIII	GCCGAG	1 cut(s)	3032
NmuCI	GTSAC	5 cut(s)	289, 1706, 2482, 3305, 3314
NsiI	ATGCAT	3 cut(s)	214, 670, 706
NspI	RCATGY	4 cut(s)	212, 668, 842, 1543
NspV	TTCGAA	1 cut(s)	1641
OliI	CACNNNNGTG	1 cut(s)	3312
PaeI	GCATGC	2 cut(s)	212, 1543
PaeR7I	CTCGAG	1 cut(s)	2919
PagI	TCATGA	1 cut(s)	3620
PciI	ACATGT	1 cut(s)	838
PcsI	WCGNNNNNNNCGW	1 cut(s)	1963
PctI	GAATGC	1 cut(s)	907
PdmI	GAANNNNTTC	4 cut(s)	411, 1308, 1742, 1995
PfeI	GAWTC	8 cut(s)	122, 866, 1309, 2519, 2704, 3038, 3272, 3361
PfoI	TCCNGGA	1 cut(s)	2470
PleI	GAGTC	2 cut(s)	847, 3017
PpsI	GAGTC	2 cut(s)	847, 3017
PpuMI	RGGWCCY	1 cut(s)	443
PscI	ACATGT	1 cut(s)	838
PshAI	GACNNNNGTC	1 cut(s)	789
PsiI	TTATAA	1 cut(s)	3530
Psp124BI	GAGCTC	2 cut(s)	83, 1788
Psp1406I	AACGTT	1 cut(s)	3567
Psp5II	RGGWCCY	1 cut(s)	443
Psp6I	CCWGG	6 cut(s)	1206, 2048, 2368, 2470, 2577, 2804
PspFI	CCCAGC	2 cut(s)	941, 2864
PspGI	CCWGG	6 cut(s)	1206, 2048, 2368, 2470, 2577, 2804
PspN4I	GGNNCC	8 cut(s)	444, 720, 1604, 1728, 1818, 2212, 2841, 3612
PspPI	GGNCC	8 cut(s)	235, 443, 649, 1603, 1727, 2468, 2575, 2808
PspPPI	RGGWCCY	1 cut(s)	443
PstI	CTGCAG	2 cut(s)	676, 3108
PstNI	CAGNNNCTG	2 cut(s)	409, 3364
PsuI	RGATCY	5 cut(s)	394, 1816, 2474, 2911, 3235
PvuII	CAGCTG	2 cut(s)	1193, 2249
RsaI	GTAC	8 cut(s)	880, 923, 1701, 1861, 2082, 2233, 2455, 2564
RsaNI	GTAC	8 cut(s)	879, 922, 1700, 1860, 2081, 2232, 2454, 2563
RseI	CAYNNNNRTG	3 cut(s)	759, 801, 3312
SacI	GAGCTC	2 cut(s)	83, 1788
Sau96I	GGNCC	8 cut(s)	235, 443, 649, 1603, 1727, 2468, 2575, 2808
ScaI	AGTACT	2 cut(s)	880, 1701
SchI	GAGTC	2 cut(s)	847, 3018
ScrFI	CCNGG	7 cut(s)	1208, 2050, 2215, 2370, 2472, 2579, 2806
SduI	GDGCHC	6 cut(s)	83, 721, 1267, 1788, 1837, 2991
SfcI	CTRYAG	3 cut(s)	264, 672, 3104
Sfr274I	CTCGAG	1 cut(s)	2919
SfuI	TTCGAA	1 cut(s)	1641
SinI	GGWCC	6 cut(s)	235, 443, 649, 1727, 2468, 2808
SlaI	CTCGAG	1 cut(s)	2919
SmiMI	CAYNNNNRTG	3 cut(s)	759, 801, 3312
SmlI	CTYRAG	5 cut(s)	1295, 2065, 2198, 2919, 3026
SmoI	CTYRAG	5 cut(s)	1295, 2065, 2198, 2919, 3026
SphI	GCATGC	2 cut(s)	212, 1543
SsiI	CCGC	6 cut(s)	105, 244, 617, 974, 2684, 3348
SspI	AATATT	3 cut(s)	964, 980, 1638
SstI	GAGCTC	2 cut(s)	83, 1788
StyD4I	CCNGG	7 cut(s)	1206, 2048, 2213, 2368, 2470, 2577, 2804
StyI	CCWWGG	5 cut(s)	1932, 2982, 3082, 3256, 3353
TaiI	ACGT	1 cut(s)	3570
TaqI	TCGA	6 cut(s)	72, 125, 851, 1641, 2920, 3012
TaqII	GACCGA	1 cut(s)	1694
TatI	WGTACW	5 cut(s)	878, 921, 1699, 1859, 2231
TauI	GCSGC	2 cut(s)	107, 620
TfiI	GAWTC	8 cut(s)	122, 866, 1309, 2519, 2704, 3038, 3272, 3361
TscAI	CASTG	8 cut(s)	298, 2177, 2563, 2593, 2940, 3108, 3295, 3314
TseFI	GTSAC	5 cut(s)	289, 1706, 2482, 3305, 3314
Tsp45I	GTSAC	5 cut(s)	289, 1706, 2482, 3305, 3314
TspGWI	ACGGA	1 cut(s)	779
TspRI	CASTG	8 cut(s)	298, 2177, 2563, 2593, 2940, 3108, 3295, 3314
Vha464I	CTTAAG	1 cut(s)	2198
VneI	GTGCAC	2 cut(s)	1263, 1833
VpaK11BI	GGWCC	6 cut(s)	235, 443, 649, 1727, 2468, 2808
XapI	RAATTY	8 cut(s)	198, 573, 860, 914, 968, 1792, 1854, 2666
XceI	RCATGY	4 cut(s)	212, 668, 842, 1543
XhoI	CTCGAG	1 cut(s)	2919
XmaJI	CCTAGG	1 cut(s)	3353
XmnI	GAANNNNTTC	4 cut(s)	411, 1308, 1742, 1995
ZrmI	AGTACT	2 cut(s)	880, 1701
Zsp2I	ATGCAT	3 cut(s)	214, 670, 706

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.