Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0012378

Physical Location & Seq

Genomic Coordinates Reverse (-)

21014683 .. 21022043

Gene Structure 7361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19230.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3612 bp

ATGGAAGAGAGCAGCAACAGCAACACCGCCGCTAGCAGCGTCGCCCAAGCCATTGCCGTAGCTCTCGACTGGAGCTCCACTCCCGACGCCCGCAAAGCAGCCGTTGCTTTCCTCGAATCGATTAAGACTGGAGATGTGCGGATTTTGGCAAACACTGCGTTTCTTCTAGTGAAGAAGGATTGGTCTTCCGAAATTCGGTTGCATGCATTTAAGATGTTACAGCATTTGGTCCGATTGCGGTGGGAAGAACTAAGCCCTACAGAGCGTAGAAACTTTGCAAATATCACAGTTGATTTAATGTCTGATATTGCAAGTCCTAGTGAGGAGTGGGCTTTAAAAAGTCAGACAGCAGCCCTGACTGCCGAGATGGTTAGAAGAGAAGGACTAAATCTATGGCAAGAATTGTTTCCAACTTTGGTTTCATTATCCTCCAAGGGTCCTATTCAAGCTGAGTTGGTCTCCATGATGCTAAGGTGGCTTCCTGAAGATATTACTGTTCACAATGAAGACTTGGAAGGAGATCGGAGAAGGCTATTGCTGCGTGGGCTGACCCAATCTTTACCTGAAATTTTGCCTTTATTATACACTTTACTAGAGAGGCACTTTGGAGCTGCGTTGAGTGAAGCAGGAAAACAACAATTTGACCTTGCAAAACAACATGCAGCAACAGTAACAGCTACTTTGAATGCTGTTAGTGCATATTCTGAATGGGCTCCATTGCCTGATCTTGCTAAATCTGGTATAATTCATGGATGTGGTTTCTTACTTTCTTCACCTGACTTTCGTCTTCATGCTTGTGAGTTTTTCAAACTTGTTTCCCAAAGGAAGAGACCTATTGATGATACCTCTGCTCCCGAATTTGATTCTGCAATCAGTAATATCTTTCAAATATTGATGAATGTCTCCAAAGAATTTTTGTACATATCTAGCTCCGGTACTGGGGTAATTGATGAAAGCAATATTGAGTTTGTGGAATATATATGTGAAAGTATGGTGTCTTTGGGTTCCACAAACTTGCAATGTATTGCTGGTGATAGAGCTGTGCTACCACTTTATTTGCAACAGATGCTGGGGTTTTTCCAACATTTTAAGCTAGCTCTTCATATTCAATCTCTCAACTTTTGGCTGGCGCTAATGAGAGACTTGATGTCAAAGCCAAAGGCTGTTGCTCGCTCAGCTGGAGATGGTTCTGATCCGGTCGATTTTGAAAAGAGAAAAATCTTAAGTTTTTTGAATGATGAAATATGTAGTGCAATTCTGGATGTATCTTTCCAACACATGCTCAAGAGAGAAAAAGTAATTCACGGAACAACAATTTCTTTGGGGCAGTTGGAATTATGGAGTGATGATGTTGAGGACAAGGGGACTTTTGGCCAGTATCGTTCGAAGTTGTTAGAACTGATCAAGTTGGTTGCCTTATACAAGCCTCTTATAGCCGGTTCTAAAGTTTCTGAAAGAATTGAGACAATCATCAAAAGCCTCTTGCTTTCTCCAATGCCTGCTCAGGACTTAGCTGTGATGGAAAGCATGCAGTTGGCTTTAGAAAATGTTGTAAGCACTATTTTCGATGGTTCAAATGAAATTGCCGGGGGTCATTCTGAAGTTCAACTTGGACTATGCAGAATATTTGAAGGTTTGCTTCAGCAACTTCTTTCTCTGAAATGGACTGAGCCAGCTCTTGTGGAAGTACTTGGGCACTACTTGGATGCAATGGGTTCATTTTTGAAGTATTTTCCGGATGCCGTGGGCAGTGTCATTAATAAATTATTTGAGCTCCTAAACTCGCTCCCTTTTGTTGTTAAGGATCCATCTACAAGTAGTGCACGGTATGCAAGGCTGCAAATCTGTACATCGTTTATTCGTATCGCCAAAACTGCTGACACAAGTGTTCTGCCTCACATGAAGGGTATAGCTGACACCATGGCGTATATGAAAAGTGAAGGTTCTTTACTTCGTGGTGAACACAATCTCTTAGGTGAAGCGTTTCTTGTCATGGCTTCTGCTGCTGGAATTCAGCAGCAGCAAGAAGTTCTGGCCTGGTTACTAGAACCTTTAAGCCAGCAATGGACGCAGATTGAGTGGCAAAATAATTATCTATCTGAACCACTTGGTCTTGTTCGCTTGTGCTCCGAGACCCCAGTTATGTGGTCAGTTTTCCACACTATCACATTCTTTGAGAAGGCACTTAAGAGAAGTGGAACCAGAAAAGCCCAGTCAAATCTACAACACAATTCAACAGAAAGTTCTATGCCCTTGCACCCAATGGCTTCTCATCTATCATGGATGCTGCCACCTCTTCCAAAACTGTTTCGTGTCTTACATTCCCTTTGGTCTCCATCTGTATTCCAAATATTACCTGGAGAGATTAAAGCTGCAATGACCATGAGTGATGTTGAGAAATTCAGTCTTCTTGGTGAAGGAAACCCTAAATTGCTAAAGGGTACCATAGCCTTCGCCAATGGATCCCAGATCAGCGCAAGTAAGGAAGGATATGTGGAGTCAAATGAATCAGACATACGAAATTGGTTGAAAGGTATCAGAGACAGTGGGTACAATGTATTGGGCCTGGCAACCACTGTTGGGGACTCATTTTACAAATGTTTGGATAGTCAATCTGTTACTCTAGCTCTAGTGGAGAATATACATTCAATGGAATTCAGGCATATCCGGCTGCTTGTTCATTCAGTTTTGATTCCTTTGGTTAAATTTTGTCCTGTGGATTTGTGGGAGGCATGGTTGGAAAGGCTCTTGCTCCCATTATTTCAACACTCCCAACAGGCTCTCAGTTGCTCCTGGTCTGGTCTTCTACATGAAGGGAGAGCAAAGGTCCCAGATGCCCATGCCATACTAGCTGGGTCGGACTTAAAAGTGGAAGTAATGGAAGAAAAGCTACTTAGGGATCTAACACGGGAGATTTGTTCACTCCTCTCTGTTATAGCTTCGCCGCAGCTAAATACTGGGCTTCCTTCCTTGGAGCACTCAGGGCATGTTCATCGTGTTGACGTATCTTCCCTCAAAGATTTGGATGCGTTCGCATCAAGCTCCATGGTTGGTTTCCTTTTAAAGCACAAAGGTCTTGCCCTTCCGGCGCTGCAGATATGTTTAGAAGCTTTTACATGGACAGATGGTGAAGCCATGACAAAAGTTTCTTCCTTTTGTTCTTCTTTGATTGGTTTAGCGGTATCGACAAATAGTGTGGAGCTCCTACAATTTGTTTCTAAGGATCTATTTTCTGCCATTATCCAAGGTTTAGCCCTTGAGTCAAATGCTTTCATCAGTGCCGATTTGATTGGTCACTGTCGTGATATATACATACATCTTTGTGAAAGAGATCCAACTCCTAGGCAGATTCTGCTCTCGCTCCCTTGTATCAAACAACATGATTTGCTTGCGTTTGAAGAAGCTTTGACGAAGACATCTAGTCCCAAAGAACAAAAGCAACATATGAAAAGCTTGCTTGTCTTAGCTACTGGAAACAAGTTAAAAGCGCTTGCTGTTCAGAAAAGCGTCAACGTCATAACAAATGTATCAACGAGGCCTCGCAGCACGGCCAACACCAAAGAAACCAGAGCAGACGATGGAGAGACTGTTGGGCTGGCAACCATATTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003002 GO:0003674 GO:0003676 GO:0003723 GO:0005049 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006403 GO:0006405 GO:0006810 GO:0006913 GO:0007275 GO:0007389 GO:0008150 GO:0009653 GO:0009798 GO:0009909 GO:0009910 GO:0009943 GO:0009944 GO:0009955 GO:0009965 GO:0010016 GO:0015931 GO:0022622 GO:0031074 GO:0032386 GO:0032501 GO:0032502 GO:0032879 GO:0032880 GO:0032991 GO:0033036 GO:0033157 GO:0042565 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046822 GO:0046825 GO:0046907 GO:0048364 GO:0048366 GO:0048367 GO:0048519 GO:0048580 GO:0048581 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0051049 GO:0051093 GO:0051168 GO:0051169 GO:0051179 GO:0051223 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051641 GO:0051649 GO:0060341 GO:0061716 GO:0065001 GO:0065007 GO:0070201 GO:0071702 GO:0071705 GO:0090087 GO:0097064 GO:0097159 GO:0099402 GO:0140104 GO:0140142 GO:1901363 GO:1903827 GO:1905392 GO:1990428 GO:2000026 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Xpo1

Protein Analysis

1204

Amino Acids

133.26

Weight (kDa)

5.93

Isoelectric Point (pI)

44.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012378)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G05040 AT3G05040
fragaria_vesca	FvH4_6g04110
malus_domestica	MD04G1216400.v1.1 MD12G1232900.v1.1
prunus_persica	Prupe.6G336100_v2.0.a1
pyrus_communis	pycom04g19230 pycom12g21520
rosa_chinensis	RchiOBHm_Chr3g0452661
rosa_multiflora	Rmu_co8350293.1_g000001 Rmu_sc0034779.1_g000001 Rmu_ssc0000156.1_g000010
rosa_roxburghii	Rroxscaffold_6G00429700
rosa_rugosa	Rorug02G0642500.1
rosa_samantha	Rh3AG044700 Rh3BG047000 Rh3CG045500 Rh3DG045900
rosa_wichuraiana	Rw3G003490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	2441
AccB1I	GGYRCC	1 cut(s)	2441
AccIII	TCCGGA	1 cut(s)	1735
AciI	CCGC	7 cut(s)	27, 30, 91, 139, 238, 2945, 3179
AclWI	GGATC	8 cut(s)	1187, 1799, 1812, 2457, 2470, 2907, 3231, 3326
AcoI	YGGCCR	2 cut(s)	1372, 3549
AcsI	RAATTY	8 cut(s)	192, 567, 857, 911, 2010, 2399, 2654, 2705
AcuI	CTGAAG	3 cut(s)	504, 1620, 1625
AcyI	GRCGYC	1 cut(s)	87
AfaI	GTAC	6 cut(s)	920, 937, 1689, 1849, 2443, 2552
AfeI	AGCGCT	1 cut(s)	3489
AfiI	CCNNNNNNNGG	3 cut(s)	195, 939, 2580
AflII	CTTAAG	2 cut(s)	1222, 2186
AhdI	GACNNNNNGTC	2 cut(s)	1147, 3420
AjnI	CCWGG	4 cut(s)	2036, 2356, 2565, 2792
AjuI	GAANNNNNNNTTGG	4 cut(s)	403, 435, 1593, 1625
AleI	CACNNNNGTG	1 cut(s)	3300
Alw21I	GWGCWC	6 cut(s)	77, 1776, 1825, 2129, 2979, 3204
Alw26I	GTCTC	9 cut(s)	463, 823, 907, 1134, 1457, 2126, 2337, 2535, 3578
Alw44I	GTGCAC	1 cut(s)	1821
AlwI	GGATC	8 cut(s)	1187, 1799, 1812, 2457, 2470, 2907, 3231, 3326
AlwNI	CAGNNNCTG	2 cut(s)	1069, 3352
Aor13HI	TCCGGA	1 cut(s)	1735
Aor51HI	AGCGCT	1 cut(s)	3489
AoxI	GGCC	5 cut(s)	1372, 2034, 2563, 3536, 3549
ApaLI	GTGCAC	1 cut(s)	1821
ApoI	RAATTY	8 cut(s)	192, 567, 857, 911, 2010, 2399, 2654, 2705
AseI	ATTAAT	1 cut(s)	1758
Asp700I	GAANNNNTTC	2 cut(s)	405, 1983
Asp718I	GGTACC	1 cut(s)	2441
AspA2I	CCTAGG	1 cut(s)	3341
AspLEI	GCGC	4 cut(s)	1132, 2477, 3091, 3490
AspS9I	GGNCC	4 cut(s)	229, 437, 2563, 2827
AsuC2I	CCSGG	1 cut(s)	1588
AsuHPI	GGTGA	6 cut(s)	765, 1043, 1970, 1988, 2426, 3140
AsuII	TTCGAA	1 cut(s)	1385
AsuNHI	GCTAGC	2 cut(s)	32, 1093
AvaII	GGWCC	3 cut(s)	229, 437, 2827
AvrII	CCTAGG	1 cut(s)	3341
BaeGI	GKGCMC	2 cut(s)	1698, 1825
BaeI	ACNNNNGTAYC	4 cut(s)	927, 960, 3510, 3543
BalI	TGGCCA	1 cut(s)	1374
BamHI	GGATCC	2 cut(s)	1804, 2462
BanI	GGYRCC	1 cut(s)	2441
BanII	GRGCYC	4 cut(s)	77, 715, 1776, 3204
BarI	GAAGNNNNNNTAC	4 cut(s)	1932, 1964, 2874, 2906
BbsI	GAAGAC	6 cut(s)	177, 513, 779, 2399, 2795, 3419
Bbv12I	GWGCWC	6 cut(s)	77, 1776, 1825, 2129, 2979, 3204
BccI	CCATC	8 cut(s)	361, 1178, 1513, 1562, 1816, 2344, 3119, 3572
BceAI	ACGGC	4 cut(s)	41, 86, 1727, 3564
BcgI	CGANNNNNNTGC	4 cut(s)	1546, 1580, 2975, 3009
BciT130I	CCWGG	4 cut(s)	2038, 2358, 2567, 2794
BclI	TGATCA	1 cut(s)	1401
BcnI	CCSGG	1 cut(s)	1588
BcoDI	GTCTC	9 cut(s)	463, 823, 907, 1134, 1457, 2126, 2337, 2535, 3578
BfmI	CTRYAG	2 cut(s)	258, 3092
BfoI	RGCGCY	3 cut(s)	1133, 3092, 3491
BfrI	CTTAAG	2 cut(s)	1222, 2186
BglI	GCCNNNNNGGC	1 cut(s)	3086
BlnI	CCTAGG	1 cut(s)	3341
BlpI	GCTNAGC	1 cut(s)	1174
BmcAI	AGTACT	1 cut(s)	1689
Bme1390I	CCNGG	5 cut(s)	1588, 2038, 2358, 2567, 2794
Bme18I	GGWCC	3 cut(s)	229, 437, 2827
BmeRI	GACNNNNNGTC	2 cut(s)	1147, 3420
BmgT120I	GGNCC	4 cut(s)	229, 437, 2563, 2827
BmiI	GGNNCC	8 cut(s)	438, 714, 1006, 1806, 2200, 2443, 2464, 2829
BmrFI	CCNGG	5 cut(s)	1588, 2038, 2358, 2567, 2794
BmrI	ACTGGG	4 cut(s)	948, 2132, 2206, 2967
BmsI	GCATC	8 cut(s)	456, 1056, 1696, 1729, 2274, 2824, 3016, 3044
BmtI	GCTAGC	2 cut(s)	36, 1097
BmuI	ACTGGG	4 cut(s)	948, 2132, 2206, 2967
BoxI	GACNNNNGTC	1 cut(s)	783
BpiI	GAAGAC	6 cut(s)	177, 513, 779, 2399, 2795, 3419
BplI	GAGNNNNNCTC	4 cut(s)	64, 96, 443, 475
BpmI	CTGGAG	4 cut(s)	91, 150, 1200, 2379
Bpu10I	CCTNAGC	2 cut(s)	470, 1503
Bpu1102I	GCTNAGC	1 cut(s)	1174
Bpu14I	TTCGAA	1 cut(s)	1385
BpuEI	CTTGAG	2 cut(s)	1268, 3278
BpuMI	CCSGG	1 cut(s)	1588
Bsa29I	ATCGAT	1 cut(s)	119
BsaHI	GRCGYC	1 cut(s)	87
BsaI	GGTCTC	4 cut(s)	463, 823, 2126, 2337
BsaJI	CCNNGG	8 cut(s)	432, 1587, 1743, 1920, 2970, 3045, 3244, 3341
BsaWI	WCCGGW	3 cut(s)	932, 1195, 1735
BsaXI	ACNNNNNCTCC	8 cut(s)	59, 89, 835, 865, 2720, 2750, 3573, 3603
Bsc4I	CCNNNNNNNGG	3 cut(s)	195, 939, 2580
Bse118I	RCCGGY	1 cut(s)	1436
Bse1I	ACTGG	8 cut(s)	74, 133, 943, 1375, 2138, 2212, 2962, 3475
Bse3DI	GCAATG	6 cut(s)	51, 716, 1025, 1716, 2069, 2382
BseAI	TCCGGA	1 cut(s)	1735
BseBI	CCWGG	4 cut(s)	2038, 2358, 2567, 2794
BseCI	ATCGAT	1 cut(s)	119
BseDI	CCNNGG	8 cut(s)	432, 1587, 1743, 1920, 2970, 3045, 3244, 3341
BseGI	GGATG	6 cut(s)	758, 1267, 1711, 1744, 2289, 3031
BseLI	CCNNNNNNNGG	3 cut(s)	195, 939, 2580
BseMI	GCAATG	6 cut(s)	51, 716, 1025, 1716, 2069, 2382
BseMII	CTCAG	6 cut(s)	441, 1188, 1517, 1659, 2797, 2994
BseNI	ACTGG	8 cut(s)	74, 133, 943, 1375, 2138, 2212, 2962, 3475
BseRI	GAGGAG	2 cut(s)	338, 2915
BseSI	GKGCMC	2 cut(s)	1698, 1825
BseYI	CCCAGC	2 cut(s)	1069, 2852
Bsh1285I	CGRYCG	1 cut(s)	1200
BshFI	GGCC	5 cut(s)	1374, 2036, 2565, 3538, 3551
BshNI	GGYRCC	1 cut(s)	2441
BshVI	ATCGAT	1 cut(s)	119
BsiEI	CGRYCG	1 cut(s)	1200
BsiHKAI	GWGCWC	6 cut(s)	77, 1776, 1825, 2129, 2979, 3204
BsiSI	CCGG	7 cut(s)	933, 1196, 1437, 1587, 1736, 2668, 3086
BslFI	GGGAC	4 cut(s)	1378, 2597, 2813, 3408
BslI	CCNNNNNNNGG	3 cut(s)	195, 939, 2580
BsmAI	GTCTC	9 cut(s)	463, 823, 907, 1134, 1457, 2126, 2337, 2535, 3578
BsmFI	GGGAC	4 cut(s)	1378, 2597, 2813, 3408
BsmI	GAATGC	1 cut(s)	691
BsnI	GGCC	5 cut(s)	1374, 2036, 2565, 3538, 3551
Bso31I	GGTCTC	4 cut(s)	463, 823, 2126, 2337
Bsp119I	TTCGAA	1 cut(s)	1385
Bsp1286I	GDGCHC	8 cut(s)	77, 715, 1698, 1776, 1825, 2129, 2979, 3204
Bsp13I	TCCGGA	1 cut(s)	1735
Bsp1407I	TGTACA	2 cut(s)	918, 1847
Bsp1720I	GCTNAGC	1 cut(s)	1174
Bsp19I	CCATGG	2 cut(s)	1920, 3045
BspACI	CCGC	7 cut(s)	27, 30, 91, 139, 238, 2945, 3179
BspANI	GGCC	5 cut(s)	1374, 2036, 2565, 3538, 3551
BspCNI	CTCAG	6 cut(s)	442, 1187, 1516, 1660, 2796, 2993
BspDI	ATCGAT	1 cut(s)	119
BspEI	TCCGGA	1 cut(s)	1735
BspLI	GGNNCC	8 cut(s)	438, 714, 1006, 1806, 2200, 2443, 2464, 2829
BspMAI	CTGCAG	1 cut(s)	3096
BspOI	GCTAGC	2 cut(s)	36, 1097
BspPI	GGATC	8 cut(s)	1187, 1799, 1812, 2457, 2470, 2907, 3231, 3326
BspQI	GCTCTTC	1 cut(s)	1104
BspT104I	TTCGAA	1 cut(s)	1385
BspT107I	GGYRCC	1 cut(s)	2441
BspTI	CTTAAG	2 cut(s)	1222, 2186
BspTNI	GGTCTC	4 cut(s)	463, 823, 2126, 2337
BsrDI	GCAATG	6 cut(s)	51, 716, 1025, 1716, 2069, 2382
BsrFI	RCCGGY	1 cut(s)	1436
BsrGI	TGTACA	2 cut(s)	918, 1847
BsrI	ACTGG	8 cut(s)	74, 133, 943, 1375, 2138, 2212, 2962, 3475
BssAI	RCCGGY	1 cut(s)	1436
BssECI	CCNNGG	8 cut(s)	432, 1587, 1743, 1920, 2970, 3045, 3244, 3341
BssNI	GRCGYC	1 cut(s)	87
BssT1I	CCWWGG	6 cut(s)	432, 1920, 2970, 3045, 3244, 3341
Bst2UI	CCWGG	4 cut(s)	2038, 2358, 2567, 2794
Bst4CI	ACNGT	9 cut(s)	289, 496, 670, 1827, 2307, 2546, 2578, 3299, 3589
Bst6I	CTCTTC	4 cut(s)	370, 821, 1104, 2301
BstACI	GRCGYC	1 cut(s)	87
BstAFI	CTTAAG	2 cut(s)	1222, 2186
BstAPI	GCANNNNNTGC	5 cut(s)	104, 155, 1066, 1829, 3352
BstAUI	TGTACA	2 cut(s)	918, 1847
BstBI	TTCGAA	1 cut(s)	1385
BstDSI	CCRYGG	3 cut(s)	1743, 1920, 3045
BstF5I	GGATG	6 cut(s)	758, 1267, 1711, 1744, 2289, 3031
BstH2I	RGCGCY	3 cut(s)	1133, 3092, 3491
BstHHI	GCGC	4 cut(s)	1132, 2477, 3091, 3490
BstMAI	GTCTC	9 cut(s)	463, 823, 907, 1134, 1457, 2126, 2337, 2535, 3578
BstMCI	CGRYCG	1 cut(s)	1200
BstNI	CCWGG	4 cut(s)	2038, 2358, 2567, 2794
BstNSI	RCATGY	5 cut(s)	206, 662, 1282, 1531, 2990
BstPAI	GACNNNNGTC	1 cut(s)	783
BstSCI	CCNGG	5 cut(s)	1586, 2036, 2356, 2565, 2792
BstSFI	CTRYAG	2 cut(s)	258, 3092
BstSLI	GKGCMC	2 cut(s)	1698, 1825
BstV2I	GAAGAC	6 cut(s)	177, 513, 779, 2399, 2795, 3419
BstX2I	RGATCY	5 cut(s)	1804, 2462, 2899, 3223, 3331
BstXI	CCANNNNNNTGG	1 cut(s)	2145
BstYI	RGATCY	5 cut(s)	1804, 2462, 2899, 3223, 3331
Bsu15I	ATCGAT	1 cut(s)	119
BsuRI	GGCC	5 cut(s)	1374, 2036, 2565, 3538, 3551
BsuTUI	ATCGAT	1 cut(s)	119
BtgI	CCRYGG	3 cut(s)	1743, 1920, 3045
BtsCI	GGATG	6 cut(s)	758, 1267, 1711, 1744, 2289, 3031
BtsI	GCAGTG	2 cut(s)	153, 1756
BtsIMutI	CAGTG	6 cut(s)	153, 1756, 2551, 2574, 3283, 3295
CaiI	CAGNNNCTG	2 cut(s)	1069, 3352
CfoI	GCGC	4 cut(s)	1132, 2477, 3091, 3490
Cfr10I	RCCGGY	1 cut(s)	1436
Cfr13I	GGNCC	4 cut(s)	229, 437, 2563, 2827
ClaI	ATCGAT	1 cut(s)	119
CseI	GACGC	4 cut(s)	28, 95, 2077, 3496
Csp6I	GTAC	6 cut(s)	919, 936, 1688, 1848, 2442, 2551
CspCI	CAANNNNNGTGG	4 cut(s)	1038, 1073, 3177, 3212
CviQI	GTAC	6 cut(s)	919, 936, 1688, 1848, 2442, 2551
DraI	TTTAAA	2 cut(s)	336, 3063
DriI	GACNNNNNGTC	2 cut(s)	1147, 3420
EaeI	YGGCCR	2 cut(s)	1372, 3549
Eam1104I	CTCTTC	4 cut(s)	370, 821, 1104, 2301
Eam1105I	GACNNNNNGTC	2 cut(s)	1147, 3420
EarI	CTCTTC	4 cut(s)	370, 821, 1104, 2301
Ecl136II	GAGCTC	3 cut(s)	75, 1774, 3202
Eco130I	CCWWGG	6 cut(s)	432, 1920, 2970, 3045, 3244, 3341
Eco147I	AGGCCT	1 cut(s)	3538
Eco24I	GRGCYC	4 cut(s)	77, 715, 1776, 3204
Eco31I	GGTCTC	4 cut(s)	463, 823, 2126, 2337
Eco47I	GGWCC	3 cut(s)	229, 437, 2827
Eco47III	AGCGCT	1 cut(s)	3489
Eco53kI	GAGCTC	3 cut(s)	75, 1774, 3202
Eco57I	CTGAAG	3 cut(s)	504, 1620, 1625
EcoICRI	GAGCTC	3 cut(s)	75, 1774, 3202
EcoO109I	RGGNCCY	2 cut(s)	437, 2827
EcoRI	GAATTC	2 cut(s)	2010, 2654
EcoRII	CCWGG	4 cut(s)	2036, 2356, 2565, 2792
EcoT14I	CCWWGG	6 cut(s)	432, 1920, 2970, 3045, 3244, 3341
EcoT22I	ATGCAT	1 cut(s)	208
EcoT38I	GRGCYC	4 cut(s)	77, 715, 1776, 3204
ErhI	CCWWGG	6 cut(s)	432, 1920, 2970, 3045, 3244, 3341
FalI	AAGNNNNNCTT	6 cut(s)	1593, 1625, 1623, 1655, 1971, 2003
FaqI	GGGAC	4 cut(s)	1378, 2597, 2813, 3408
FauI	CCCGC	1 cut(s)	98
FauNDI	CATATG	1 cut(s)	3444
FbaI	TGATCA	1 cut(s)	1401
FokI	GGATG	6 cut(s)	765, 1274, 1718, 1751, 2296, 3038
FriOI	GRGCYC	4 cut(s)	77, 715, 1776, 3204
GlaI	GCGC	4 cut(s)	1131, 2476, 3090, 3489
GsaI	CCCAGC	2 cut(s)	1073, 2856
GsuI	CTGGAG	4 cut(s)	91, 150, 1200, 2379
HaeII	RGCGCY	3 cut(s)	1133, 3092, 3491
HaeIII	GGCC	5 cut(s)	1374, 2036, 2565, 3538, 3551
HapII	CCGG	7 cut(s)	933, 1196, 1437, 1587, 1736, 2668, 3086
HgaI	GACGC	4 cut(s)	28, 95, 2077, 3496
HhaI	GCGC	4 cut(s)	1132, 2477, 3091, 3490
Hin1I	GRCGYC	1 cut(s)	87
Hin6I	GCGC	4 cut(s)	1130, 2475, 3089, 3488
HinP1I	GCGC	4 cut(s)	1130, 2475, 3089, 3488
HincII	GTYRAC	2 cut(s)	3001, 3511
HindII	GTYRAC	2 cut(s)	3001, 3511
HindIII	AAGCTT	3 cut(s)	3108, 3402, 3451
HinfI	GANTC	8 cut(s)	116, 863, 2498, 2507, 2585, 2692, 3260, 3349
HpaII	CCGG	7 cut(s)	933, 1196, 1437, 1587, 1736, 2668, 3086
HphI	GGTGA	6 cut(s)	765, 1043, 1970, 1988, 2426, 3140
Hpy166II	GTNNAC	6 cut(s)	499, 1823, 1961, 2921, 3001, 3511
Hpy188III	TCNNGA	9 cut(s)	65, 83, 482, 854, 1259, 1285, 1505, 1736, 3302
Hpy8I	GTNNAC	6 cut(s)	499, 1823, 1961, 2921, 3001, 3511
Hpy99I	CGWCG	2 cut(s)	44, 89
HpyCH4III	ACNGT	9 cut(s)	289, 496, 670, 1827, 2307, 2546, 2578, 3299, 3589
HpyCH4IV	ACGT	2 cut(s)	3003, 3513
HpySE526I	ACGT	2 cut(s)	3003, 3513
Hsp92I	GRCGYC	1 cut(s)	87
HspAI	GCGC	4 cut(s)	1130, 2475, 3089, 3488
Kpn2I	TCCGGA	1 cut(s)	1735
KpnI	GGTACC	1 cut(s)	2445
Ksp22I	TGATCA	1 cut(s)	1401
LguI	GCTCTTC	1 cut(s)	1104
LweI	GCATC	8 cut(s)	456, 1056, 1696, 1729, 2274, 2824, 3016, 3044
MaeII	ACGT	2 cut(s)	3003, 3513
MaeIII	GTNAC	5 cut(s)	216, 670, 2040, 2617, 3293
MflI	RGATCY	5 cut(s)	1804, 2462, 2899, 3223, 3331
MhlI	GDGCHC	8 cut(s)	77, 715, 1698, 1776, 1825, 2129, 2979, 3204
MlsI	TGGCCA	1 cut(s)	1374
MluNI	TGGCCA	1 cut(s)	1374
MlyI	GAGTC	3 cut(s)	2507, 2579, 3269
MmeI	TCCRAC	7 cut(s)	434, 1105, 1297, 1311, 2718, 2838, 3359
Mox20I	TGGCCA	1 cut(s)	1374
Mph1103I	ATGCAT	1 cut(s)	208
MroI	TCCGGA	1 cut(s)	1735
MroXI	GAANNNNTTC	2 cut(s)	405, 1983
MscI	TGGCCA	1 cut(s)	1374
MslI	CAYNNNNRTG	4 cut(s)	753, 795, 3300, 3321
Msp20I	TGGCCA	1 cut(s)	1374
MspA1I	CMGCKG	1 cut(s)	1178
MspCI	CTTAAG	2 cut(s)	1222, 2186
MspI	CCGG	7 cut(s)	933, 1196, 1437, 1587, 1736, 2668, 3086
MspR9I	CCNGG	5 cut(s)	1588, 2038, 2358, 2567, 2794
Mva1269I	GAATGC	1 cut(s)	691
MvaI	CCWGG	4 cut(s)	2038, 2358, 2567, 2794
NciI	CCSGG	1 cut(s)	1588
NcoI	CCATGG	2 cut(s)	1920, 3045
NdeI	CATATG	1 cut(s)	3444
NheI	GCTAGC	2 cut(s)	32, 1093
NlaIV	GGNNCC	8 cut(s)	438, 714, 1006, 1806, 2200, 2443, 2464, 2829
NmeAIII	GCCGAG	1 cut(s)	388
NmuCI	GTSAC	1 cut(s)	3293
NsiI	ATGCAT	1 cut(s)	208
NspI	RCATGY	5 cut(s)	206, 662, 1282, 1531, 2990
NspV	TTCGAA	1 cut(s)	1385
OliI	CACNNNNGTG	1 cut(s)	3300
PaeI	GCATGC	2 cut(s)	206, 1531
PceI	AGGCCT	1 cut(s)	3538
PciSI	GCTCTTC	1 cut(s)	1104
PctI	GAATGC	1 cut(s)	691
PdmI	GAANNNNTTC	2 cut(s)	405, 1983
PfeI	GAWTC	5 cut(s)	116, 863, 2507, 2692, 3349
PleI	GAGTC	3 cut(s)	2506, 2579, 3268
PpsI	GAGTC	3 cut(s)	2506, 2579, 3268
PpuMI	RGGWCCY	2 cut(s)	437, 2827
PshAI	GACNNNNGTC	1 cut(s)	783
PshBI	ATTAAT	1 cut(s)	1758
Psp124BI	GAGCTC	3 cut(s)	77, 1776, 3204
Psp5II	RGGWCCY	2 cut(s)	437, 2827
Psp6I	CCWGG	4 cut(s)	2036, 2356, 2565, 2792
PspFI	CCCAGC	2 cut(s)	1069, 2852
PspGI	CCWGG	4 cut(s)	2036, 2356, 2565, 2792
PspN4I	GGNNCC	8 cut(s)	438, 714, 1006, 1806, 2200, 2443, 2464, 2829
PspPI	GGNCC	4 cut(s)	229, 437, 2563, 2827
PspPPI	RGGWCCY	2 cut(s)	437, 2827
PstI	CTGCAG	1 cut(s)	3096
PstNI	CAGNNNCTG	2 cut(s)	1069, 3352
PsuI	RGATCY	5 cut(s)	1804, 2462, 2899, 3223, 3331
PvuII	CAGCTG	1 cut(s)	1178
RsaI	GTAC	6 cut(s)	920, 937, 1689, 1849, 2443, 2552
RsaNI	GTAC	6 cut(s)	919, 936, 1688, 1848, 2442, 2551
RseI	CAYNNNNRTG	4 cut(s)	753, 795, 3300, 3321
SacI	GAGCTC	3 cut(s)	77, 1776, 3204
SapI	GCTCTTC	1 cut(s)	1104
Sau96I	GGNCC	4 cut(s)	229, 437, 2563, 2827
ScaI	AGTACT	1 cut(s)	1689
SchI	GAGTC	3 cut(s)	2507, 2579, 3269
ScrFI	CCNGG	5 cut(s)	1588, 2038, 2358, 2567, 2794
SduI	GDGCHC	8 cut(s)	77, 715, 1698, 1776, 1825, 2129, 2979, 3204
SfaNI	GCATC	8 cut(s)	456, 1056, 1696, 1729, 2274, 2824, 3016, 3044
SfcI	CTRYAG	2 cut(s)	258, 3092
SfuI	TTCGAA	1 cut(s)	1385
SinI	GGWCC	3 cut(s)	229, 437, 2827
SmiMI	CAYNNNNRTG	4 cut(s)	753, 795, 3300, 3321
SmlI	CTYRAG	4 cut(s)	1222, 1283, 2186, 3257
SmoI	CTYRAG	4 cut(s)	1222, 1283, 2186, 3257
SphI	GCATGC	2 cut(s)	206, 1531
SseBI	AGGCCT	1 cut(s)	3538
SsiI	CCGC	7 cut(s)	27, 30, 91, 139, 238, 2945, 3179
SspI	AATATT	4 cut(s)	891, 961, 1626, 2352
SstI	GAGCTC	3 cut(s)	77, 1776, 3204
StuI	AGGCCT	1 cut(s)	3538
StyD4I	CCNGG	5 cut(s)	1586, 2036, 2356, 2565, 2792
StyI	CCWWGG	6 cut(s)	432, 1920, 2970, 3045, 3244, 3341
TaaI	ACNGT	9 cut(s)	289, 496, 670, 1827, 2307, 2546, 2578, 3299, 3589
TaiI	ACGT	2 cut(s)	3006, 3516
TaqI	TCGA	7 cut(s)	66, 114, 119, 1200, 1385, 1566, 3185
TatI	WGTACW	3 cut(s)	918, 1687, 1847
TauI	GCSGC	2 cut(s)	32, 2947
TfiI	GAWTC	5 cut(s)	116, 863, 2507, 2692, 3349
TscAI	CASTG	6 cut(s)	160, 1756, 2551, 2581, 3283, 3302
TseFI	GTSAC	1 cut(s)	3293
Tsp45I	GTSAC	1 cut(s)	3293
TspGWI	ACGGA	1 cut(s)	1320
TspRI	CASTG	6 cut(s)	160, 1756, 2551, 2581, 3283, 3302
Vha464I	CTTAAG	2 cut(s)	1222, 2186
VneI	GTGCAC	1 cut(s)	1821
VpaK11BI	GGWCC	3 cut(s)	229, 437, 2827
VspI	ATTAAT	1 cut(s)	1758
XapI	RAATTY	8 cut(s)	192, 567, 857, 911, 2010, 2399, 2654, 2705
XceI	RCATGY	5 cut(s)	206, 662, 1282, 1531, 2990
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2354
XmaJI	CCTAGG	1 cut(s)	3341
XmnI	GAANNNNTTC	2 cut(s)	405, 1983
ZrmI	AGTACT	1 cut(s)	1689
Zsp2I	ATGCAT	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.