MD04G1229300.v1.1
MYB Family

Myb-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0018708
Physical Location & Seq
Forward (+)
30970183 .. 30970924
742 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1229300.v1.1.491

Sequence Viewer

Length: 282 bp
ATGGTGAGGGCTCCAGCTCCTTCACCTTGTTGTGAGAAGATGGGAATGAAGAAGGGACCGTGGACGCATGAAGAAGATGAGATATTGATTTCTTACATCCAAAAATATGGACATGCGAATTGGAGAGCGCTTCCAAAACAAGCTGGTCTATTGAGGTGTGGAAAGAGTTGCAGGCTTCGGTGGTTTAACTACTTGCGGCCGGACATTAAACGGGGGAACTTTAGCAGGGAAGAAGAAGAAACTATCCTCAACCTGCATAAACTTCTTGGAAACAGGAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

94

Amino Acids

10.9

Weight (kDa)

9.55

Isoelectric Point (pI)

67.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 18 - 65 5.1e-18 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 21 - 81 7.1e-16 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018708)

Species Orthologous Gene IDs
malus_domestica MD04G1229300.v1.1
pyrus_communis pycom04g20320
rosa_chinensis RchiOBHm_Chr3g0485431
rosa_multiflora Rmu_co8054398.1_g000001 Rmu_sc0000168.1_g000003 Rmu_sc0010132.1_g000031
rosa_roxburghii Rroxscaffold_2G00083510 Rroxscaffold_3G00271750
rosa_samantha Rh4CG395300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 261
AciI CCGC 1 cut(s) 196
AcoI YGGCCR 1 cut(s) 197
AfeI AGCGCT 1 cut(s) 129
AluBI AGCT 2 cut(s) 17, 143
AluI AGCT 2 cut(s) 17, 143
AlwNI CAGNNNCTG 1 cut(s) 279
Aor51HI AGCGCT 1 cut(s) 129
AoxI GGCC 1 cut(s) 197
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 2 cut(s) 15, 16
AvaII GGWCC 1 cut(s) 56
BanII GRGCYC 1 cut(s) 13
BccI CCATC 1 cut(s) 34
BfoI RGCGCY 1 cut(s) 131
BfuAI ACCTGC 1 cut(s) 261
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 2 cut(s) 12, 57
BsaJI CCNNGG 1 cut(s) 59
BseDI CCNNGG 1 cut(s) 59
BseGI GGATG 1 cut(s) 96
BseX3I CGGCCG 1 cut(s) 197
Bsh1285I CGRYCG 1 cut(s) 200
BshFI GGCC 1 cut(s) 199
BsiEI CGRYCG 1 cut(s) 200
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 69
BsmFI GGGAC 1 cut(s) 69
BsnI GGCC 1 cut(s) 199
Bsp1286I GDGCHC 1 cut(s) 13
BspACI CCGC 1 cut(s) 196
BspANI GGCC 1 cut(s) 199
BspLI GGNNCC 2 cut(s) 12, 57
BspMI ACCTGC 1 cut(s) 261
BssECI CCNNGG 1 cut(s) 59
Bst4CI ACNGT 1 cut(s) 60
BstC8I GCNNGC 1 cut(s) 173
BstDSI CCRYGG 1 cut(s) 59
BstF5I GGATG 1 cut(s) 96
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstMCI CGRYCG 1 cut(s) 200
BstNSI RCATGY 1 cut(s) 116
BstXI CCANNNNNNTGG 1 cut(s) 107
BstZI CGGCCG 1 cut(s) 197
BsuRI GGCC 1 cut(s) 199
BtgI CCRYGG 1 cut(s) 59
BtsCI GGATG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 261
Cac8I GCNNGC 1 cut(s) 173
CaiI CAGNNNCTG 1 cut(s) 279
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 1 cut(s) 56
CseI GACGC 1 cut(s) 73
CviAII CATG 2 cut(s) 68, 113
CviJI RGCY 5 cut(s) 11, 17, 143, 175, 199
CviKI_1 RGCY 5 cut(s) 11, 17, 143, 175, 199
EaeI YGGCCR 1 cut(s) 197
EagI CGGCCG 1 cut(s) 197
EclXI CGGCCG 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 13
Eco47I GGWCC 1 cut(s) 56
Eco47III AGCGCT 1 cut(s) 129
Eco52I CGGCCG 1 cut(s) 197
EcoT38I GRGCYC 1 cut(s) 13
FaeI CATG 2 cut(s) 71, 116
FaiI YATR 4 cut(s) 69, 108, 114, 258
FaqI GGGAC 1 cut(s) 69
FatI CATG 2 cut(s) 67, 112
Fnu4HI GCNGC 1 cut(s) 197
FokI GGATG 1 cut(s) 83
FriOI GRGCYC 1 cut(s) 13
Fsp4HI GCNGC 1 cut(s) 197
GlaI GCGC 1 cut(s) 129
GluI GCNGC 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 1 cut(s) 199
HapII CCGG 1 cut(s) 200
HgaI GACGC 1 cut(s) 73
HhaI GCGC 1 cut(s) 130
Hin1II CATG 2 cut(s) 71, 116
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HpaII CCGG 1 cut(s) 200
HphI GGTGA 2 cut(s) 15, 16
Hpy166II GTNNAC 1 cut(s) 63
Hpy8I GTNNAC 1 cut(s) 63
HpyAV CCTTC 2 cut(s) 30, 46
HpyCH4III ACNGT 1 cut(s) 60
HpyCH4V TGCA 2 cut(s) 171, 256
Hsp92II CATG 2 cut(s) 71, 116
HspAI GCGC 1 cut(s) 128
LmnI GCTCC 2 cut(s) 16, 22
LpnPI CCDG 7 cut(s) 27, 129, 157, 211, 213, 259, 266
MboII GAAGA 7 cut(s) 49, 61, 83, 86, 242, 245, 248
MhlI GDGCHC 1 cut(s) 13
MluCI AATT 1 cut(s) 118
MnlI CCTC 2 cut(s) 147, 257
MseI TTAA 2 cut(s) 186, 207
MspI CCGG 1 cut(s) 200
NlaIII CATG 2 cut(s) 71, 116
NlaIV GGNNCC 2 cut(s) 12, 57
NspI RCATGY 1 cut(s) 116
PkrI GCNGC 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 12, 57
PspPI GGNCC 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 279
SaqAI TTAA 2 cut(s) 186, 207
SatI GCNGC 1 cut(s) 197
Sau96I GGNCC 1 cut(s) 56
SduI GDGCHC 1 cut(s) 13
SetI ASST 5 cut(s) 19, 28, 145, 158, 255
SinI GGWCC 1 cut(s) 56
Sse9I AATT 1 cut(s) 118
SsiI CCGC 1 cut(s) 196
TaaI ACNGT 1 cut(s) 60
TasI AATT 1 cut(s) 118
TauI GCSGC 1 cut(s) 199
Tru1I TTAA 2 cut(s) 186, 207
Tru9I TTAA 2 cut(s) 186, 207
TspDTI ATGAA 2 cut(s) 62, 84
VpaK11BI GGWCC 1 cut(s) 56
XceI RCATGY 1 cut(s) 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.