Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010132.1

Orthogroup ID

OG0018708

Physical Location & Seq

Genomic Coordinates Reverse (-)

107703 .. 108109

Gene Structure 407 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010132.1_g000031.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggaaaagcaatctcatactgttgcatttcctggaataaggagaggtgcatggactcctgaggaggacaagaagctccttgctttcgttcaacaacatggccatggaagctggcgttccttcccccagaaagctggtctccaaagatgtggaaagagctgcaggctaagatggagaaactatctaaaccctgatattaagagaggaaatttcagtttgcaggaagaccagaccatcattctacttcatgcacttttgggcaacaggcaattaattgctaaattgaatcttaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

98

Amino Acids

11.33

Weight (kDa)

10.43

Isoelectric Point (pI)

55.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018708)

Species	Orthologous Gene IDs
malus_domestica	MD04G1229300.v1.1
pyrus_communis	pycom04g20320
rosa_chinensis	RchiOBHm_Chr3g0485431
rosa_multiflora	Rmu_co8054398.1_g000001 Rmu_sc0000168.1_g000003 Rmu_sc0010132.1_g000031
rosa_roxburghii	Rroxscaffold_2G00083510 Rroxscaffold_3G00271750
rosa_samantha	Rh4CG395300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	100
AcsI	RAATTY	1 cut(s)	208
AgsI	TTSAA	2 cut(s)	92, 286
AjnI	CCWGG	1 cut(s)	31
AluBI	AGCT	4 cut(s)	76, 111, 134, 159
AluI	AGCT	4 cut(s)	76, 111, 134, 159
Alw26I	GTCTC	1 cut(s)	143
AoxI	GGCC	1 cut(s)	100
ApeKI	GCWGC	1 cut(s)	159
ApoI	RAATTY	1 cut(s)	208
AseI	ATTAAT	1 cut(s)	272
AxyI	CCTNAGG	1 cut(s)	60
BalI	TGGCCA	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	1 cut(s)	146
BccI	CCATC	2 cut(s)	165, 242
BciT130I	CCWGG	1 cut(s)	33
BcoDI	GTCTC	1 cut(s)	143
BfmI	CTRYAG	1 cut(s)	160
BisI	GCNGC	1 cut(s)	160
BlsI	GCNGC	1 cut(s)	161
Bme1390I	CCNGG	1 cut(s)	33
BmrFI	CCNGG	1 cut(s)	33
BpiI	GAAGAC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	1 cut(s)	103
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	1 cut(s)	33
BseDI	CCNNGG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	146
BshFI	GGCC	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	143
BsnI	GGCC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	143
Bsp19I	CCATGG	1 cut(s)	103
BspANI	GGCC	1 cut(s)	102
BspCNI	CTCAG	1 cut(s)	52
BspMAI	CTGCAG	1 cut(s)	164
BspTNI	GGTCTC	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	103
BssT1I	CCWWGG	1 cut(s)	103
Bst2UI	CCWGG	1 cut(s)	33
Bst4CI	ACNGT	1 cut(s)	22
BstC8I	GCNNGC	2 cut(s)	113, 164
BstDEI	CTNAG	2 cut(s)	60, 167
BstDSI	CCRYGG	1 cut(s)	103
BstMAI	GTCTC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	31
BstSFI	CTRYAG	1 cut(s)	160
BstV1I	GCAGC	1 cut(s)	146
BstV2I	GAAGAC	1 cut(s)	231
BstXI	CCANNNNNNTGG	2 cut(s)	134, 149
Bsu36I	CCTNAGG	1 cut(s)	60
BsuRI	GGCC	1 cut(s)	102
BtgI	CCRYGG	1 cut(s)	103
Cac8I	GCNNGC	2 cut(s)	113, 164
CviAII	CATG	4 cut(s)	51, 98, 104, 248
CviJI	RGCY	6 cut(s)	76, 102, 111, 134, 159, 166
CviKI_1	RGCY	6 cut(s)	76, 102, 111, 134, 159, 166
DdeI	CTNAG	2 cut(s)	60, 167
EaeI	YGGCCR	1 cut(s)	100
Eco130I	CCWWGG	1 cut(s)	103
Eco31I	GGTCTC	1 cut(s)	143
Eco81I	CCTNAGG	1 cut(s)	60
EcoRII	CCWGG	1 cut(s)	31
EcoT14I	CCWWGG	1 cut(s)	103
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	4 cut(s)	54, 101, 107, 251
FaiI	YATR	5 cut(s)	18, 52, 99, 105, 249
FatI	CATG	4 cut(s)	50, 97, 103, 247
Fnu4HI	GCNGC	1 cut(s)	160
Fsp4HI	GCNGC	1 cut(s)	160
GluI	GCNGC	1 cut(s)	160
HaeIII	GGCC	1 cut(s)	102
Hin1II	CATG	4 cut(s)	54, 101, 107, 251
HinfI	GANTC	2 cut(s)	55, 286
Hpy188III	TCNNGA	1 cut(s)	59
HpyAV	CCTTC	1 cut(s)	130
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	5 cut(s)	26, 50, 162, 220, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	108
HpyF3I	CTNAG	2 cut(s)	60, 167
Hsp92II	CATG	4 cut(s)	54, 101, 107, 251
LmnI	GCTCC	1 cut(s)	81
Lsp1109I	GCAGC	1 cut(s)	146
MboII	GAAGA	1 cut(s)	236
MlsI	TGGCCA	1 cut(s)	102
MluCI	AATT	5 cut(s)	208, 269, 273, 281, 292
MluNI	TGGCCA	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	49
MnlI	CCTC	4 cut(s)	38, 55, 58, 197
Mox20I	TGGCCA	1 cut(s)	102
MscI	TGGCCA	1 cut(s)	102
MseI	TTAA	4 cut(s)	198, 272, 291, 295
MslI	CAYNNNNRTG	1 cut(s)	102
Msp20I	TGGCCA	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	33
MvaI	CCWGG	1 cut(s)	33
MwoI	GCNNNNNNNGC	1 cut(s)	108
NcoI	CCATGG	1 cut(s)	103
NlaIII	CATG	4 cut(s)	54, 101, 107, 251
PacI	TTAATTAA	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	286
PfoI	TCCNGGA	1 cut(s)	31
PkrI	GCNGC	1 cut(s)	161
PleI	GAGTC	1 cut(s)	49
PpsI	GAGTC	1 cut(s)	49
PshBI	ATTAAT	1 cut(s)	272
Psp6I	CCWGG	1 cut(s)	31
PspGI	CCWGG	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	164
RseI	CAYNNNNRTG	1 cut(s)	102
SaqAI	TTAA	4 cut(s)	198, 272, 291, 295
SatI	GCNGC	1 cut(s)	160
SchI	GAGTC	1 cut(s)	49
ScrFI	CCNGG	1 cut(s)	33
SetI	ASST	5 cut(s)	49, 78, 113, 136, 161
SfcI	CTRYAG	1 cut(s)	160
SmiMI	CAYNNNNRTG	1 cut(s)	102
Sse9I	AATT	5 cut(s)	208, 269, 273, 281, 292
StyD4I	CCNGG	1 cut(s)	31
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	1 cut(s)	22
TasI	AATT	5 cut(s)	208, 269, 273, 281, 292
TfiI	GAWTC	1 cut(s)	286
Tru1I	TTAA	4 cut(s)	198, 272, 291, 295
Tru9I	TTAA	4 cut(s)	198, 272, 291, 295
TseI	GCWGC	1 cut(s)	159
TspDTI	ATGAA	1 cut(s)	236
VspI	ATTAAT	1 cut(s)	272
XapI	RAATTY	1 cut(s)	208

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.