Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0018708

Physical Location & Seq

Genomic Coordinates Forward (+)

21869530 .. 21869929

Gene Structure 400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g20320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGGTGAGGGCTCCAGCTCCTTCACCTTGTTGTGAGAAGATGGGAATGAAGAAGGGACCGTGGACGCATGAAGAAGATGAGATATTGATTTCTTACATCCAACAATATGGACATGCGAATTGGAGAGCGCTTCCAAAACAAGCTGGTCTATTGAGGTGTGGAAAGAGTTGCAGGCTTCGGTGGTTTAACTACTTGCGGCCGGGCATTAAACGGGGGAACTTTAGCAGGGAAGAAGAAGAAACTATACTCAACCTGCATAAACTTCTTGGAAATAGGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

94

Amino Acids

10.84

Weight (kDa)

9.59

Isoelectric Point (pI)

68.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018708)

Species	Orthologous Gene IDs
malus_domestica	MD04G1229300.v1.1
pyrus_communis	pycom04g20320
rosa_chinensis	RchiOBHm_Chr3g0485431
rosa_multiflora	Rmu_co8054398.1_g000001 Rmu_sc0000168.1_g000003 Rmu_sc0010132.1_g000031
rosa_roxburghii	Rroxscaffold_2G00083510 Rroxscaffold_3G00271750
rosa_samantha	Rh4CG395300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	261
AciI	CCGC	1 cut(s)	196
AcoI	YGGCCR	1 cut(s)	197
AfeI	AGCGCT	1 cut(s)	129
AluBI	AGCT	2 cut(s)	17, 143
AluI	AGCT	2 cut(s)	17, 143
Aor51HI	AGCGCT	1 cut(s)	129
AoxI	GGCC	1 cut(s)	197
AspLEI	GCGC	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	56
AsuC2I	CCSGG	1 cut(s)	201
AsuHPI	GGTGA	2 cut(s)	15, 16
AvaII	GGWCC	1 cut(s)	56
BanII	GRGCYC	1 cut(s)	13
BarI	GAAGNNNNNNTAC	2 cut(s)	228, 260
BccI	CCATC	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	201
BfoI	RGCGCY	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	261
BisI	GCNGC	1 cut(s)	197
BlsI	GCNGC	1 cut(s)	198
Bme1390I	CCNGG	1 cut(s)	201
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	2 cut(s)	12, 57
BmrFI	CCNGG	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	59
BseDI	CCNNGG	1 cut(s)	59
BseGI	GGATG	1 cut(s)	96
BseX3I	CGGCCG	1 cut(s)	197
Bsh1285I	CGRYCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	199
BsiEI	CGRYCG	1 cut(s)	200
BsiSI	CCGG	1 cut(s)	200
BslFI	GGGAC	1 cut(s)	69
BsmFI	GGGAC	1 cut(s)	69
BsnI	GGCC	1 cut(s)	199
Bsp1286I	GDGCHC	1 cut(s)	13
BspACI	CCGC	1 cut(s)	196
BspANI	GGCC	1 cut(s)	199
BspLI	GGNNCC	2 cut(s)	12, 57
BspMI	ACCTGC	1 cut(s)	261
BssECI	CCNNGG	1 cut(s)	59
Bst4CI	ACNGT	1 cut(s)	60
BstC8I	GCNNGC	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	59
BstF5I	GGATG	1 cut(s)	96
BstH2I	RGCGCY	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	130
BstMCI	CGRYCG	1 cut(s)	200
BstNSI	RCATGY	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	199
BstXI	CCANNNNNNTGG	1 cut(s)	107
BstZI	CGGCCG	1 cut(s)	197
BsuRI	GGCC	1 cut(s)	199
BtgI	CCRYGG	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	96
BveI	ACCTGC	1 cut(s)	261
Cac8I	GCNNGC	1 cut(s)	173
CfoI	GCGC	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	56
CseI	GACGC	1 cut(s)	73
CviAII	CATG	2 cut(s)	68, 113
CviJI	RGCY	5 cut(s)	11, 17, 143, 175, 199
CviKI_1	RGCY	5 cut(s)	11, 17, 143, 175, 199
EaeI	YGGCCR	1 cut(s)	197
EagI	CGGCCG	1 cut(s)	197
EclXI	CGGCCG	1 cut(s)	197
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	1 cut(s)	56
Eco47III	AGCGCT	1 cut(s)	129
Eco52I	CGGCCG	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	2 cut(s)	71, 116
FaiI	YATR	5 cut(s)	69, 108, 114, 245, 258
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	2 cut(s)	67, 112
Fnu4HI	GCNGC	1 cut(s)	197
FokI	GGATG	1 cut(s)	83
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	197
GlaI	GCGC	1 cut(s)	129
GluI	GCNGC	1 cut(s)	197
HaeII	RGCGCY	1 cut(s)	131
HaeIII	GGCC	1 cut(s)	199
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	1 cut(s)	130
Hin1II	CATG	2 cut(s)	71, 116
Hin6I	GCGC	1 cut(s)	128
HinP1I	GCGC	1 cut(s)	128
HpaII	CCGG	1 cut(s)	200
HphI	GGTGA	2 cut(s)	15, 16
Hpy166II	GTNNAC	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	63
HpyAV	CCTTC	2 cut(s)	30, 46
HpyCH4III	ACNGT	1 cut(s)	60
HpyCH4V	TGCA	2 cut(s)	171, 256
Hsp92II	CATG	2 cut(s)	71, 116
HspAI	GCGC	1 cut(s)	128
LmnI	GCTCC	2 cut(s)	16, 22
LpnPI	CCDG	6 cut(s)	27, 129, 157, 211, 213, 266
MboII	GAAGA	7 cut(s)	49, 61, 83, 86, 242, 245, 248
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	118
MmeI	TCCRAC	1 cut(s)	124
MnlI	CCTC	1 cut(s)	147
MseI	TTAA	2 cut(s)	186, 207
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	201
NciI	CCSGG	1 cut(s)	201
NlaIII	CATG	2 cut(s)	71, 116
NlaIV	GGNNCC	2 cut(s)	12, 57
NspI	RCATGY	1 cut(s)	116
PkrI	GCNGC	1 cut(s)	198
PspN4I	GGNNCC	2 cut(s)	12, 57
PspPI	GGNCC	1 cut(s)	56
SaqAI	TTAA	2 cut(s)	186, 207
SatI	GCNGC	1 cut(s)	197
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	5 cut(s)	19, 28, 145, 158, 255
SinI	GGWCC	1 cut(s)	56
Sse9I	AATT	1 cut(s)	118
SsiI	CCGC	1 cut(s)	196
StyD4I	CCNGG	1 cut(s)	199
TaaI	ACNGT	1 cut(s)	60
TasI	AATT	1 cut(s)	118
TauI	GCSGC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	186, 207
Tru9I	TTAA	2 cut(s)	186, 207
TspDTI	ATGAA	2 cut(s)	62, 84
VpaK11BI	GGWCC	1 cut(s)	56
XceI	RCATGY	1 cut(s)	116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.