Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0018708

Physical Location & Seq

Genomic Coordinates Reverse (-)

64490637 .. 64490989

Gene Structure 353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG395300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGGGGAGGTCTCCATGTTGCGAGAAGGTGGGTTTGAAAAAAGGACCATGGACACCTGAGGAAGACCAAAAGCTACTGTCTTACATCCAGGAATATGGCCATGGAAGCTGGCGTGCTTTGCCCGCTAAAGCAGGGCTTCAAAGATGTGGGAAGAGCTGTCGACTGAGGTGGACTAATTACCTGAGGCCTGATATCAAAAGAGGAAAGTTTAGTTTGCAGGAAGAGCAGACCATCATTCAACTCCATGCTCTTCTCGGAAACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

88

Amino Acids

10.13

Weight (kDa)

9.69

Isoelectric Point (pI)

51.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	3e-18	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	6.4e-15	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018708)

Species	Orthologous Gene IDs
malus_domestica	MD04G1229300.v1.1
pyrus_communis	pycom04g20320
rosa_chinensis	RchiOBHm_Chr3g0485431
rosa_multiflora	Rmu_co8054398.1_g000001 Rmu_sc0000168.1_g000003 Rmu_sc0010132.1_g000031
rosa_roxburghii	Rroxscaffold_2G00083510 Rroxscaffold_3G00271750
rosa_samantha	Rh4CG395300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AciI	CCGC	1 cut(s)	123
AcoI	YGGCCR	1 cut(s)	97
AgsI	TTSAA	3 cut(s)	37, 140, 239
AjnI	CCWGG	1 cut(s)	87
AluBI	AGCT	3 cut(s)	73, 108, 156
AluI	AGCT	3 cut(s)	73, 108, 156
Alw26I	GTCTC	1 cut(s)	15
AoxI	GGCC	2 cut(s)	97, 185
AspS9I	GGNCC	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	44
AxyI	CCTNAGG	2 cut(s)	57, 182
BalI	TGGCCA	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	69
BccI	CCATC	1 cut(s)	239
BciT130I	CCWGG	1 cut(s)	89
BcoDI	GTCTC	1 cut(s)	15
Bme1390I	CCNGG	1 cut(s)	89
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BmrFI	CCNGG	1 cut(s)	89
BpiI	GAAGAC	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	15
BsaJI	CCNNGG	2 cut(s)	47, 100
Bse21I	CCTNAGG	2 cut(s)	57, 182
BseBI	CCWGG	1 cut(s)	89
BseDI	CCNNGG	2 cut(s)	47, 100
BseGI	GGATG	1 cut(s)	84
BseMII	CTCAG	3 cut(s)	48, 155, 173
BshFI	GGCC	2 cut(s)	99, 187
BsmAI	GTCTC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	99, 187
Bso31I	GGTCTC	1 cut(s)	15
Bsp19I	CCATGG	2 cut(s)	47, 100
BspACI	CCGC	1 cut(s)	123
BspANI	GGCC	2 cut(s)	99, 187
BspCNI	CTCAG	3 cut(s)	49, 156, 174
BspQI	GCTCTTC	3 cut(s)	146, 216, 255
BspTNI	GGTCTC	1 cut(s)	15
BssECI	CCNNGG	2 cut(s)	47, 100
BssT1I	CCWWGG	2 cut(s)	47, 100
Bst2UI	CCWGG	1 cut(s)	89
Bst4CI	ACNGT	1 cut(s)	78
Bst6I	CTCTTC	3 cut(s)	146, 216, 255
BstC8I	GCNNGC	3 cut(s)	110, 114, 123
BstDEI	CTNAG	3 cut(s)	57, 164, 182
BstDSI	CCRYGG	2 cut(s)	47, 100
BstF5I	GGATG	1 cut(s)	84
BstMAI	GTCTC	1 cut(s)	15
BstMWI	GCNNNNNNNGC	4 cut(s)	105, 118, 122, 223
BstNI	CCWGG	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	87
BstV2I	GAAGAC	1 cut(s)	69
BstXI	CCANNNNNNTGG	1 cut(s)	95
Bsu36I	CCTNAGG	2 cut(s)	57, 182
BsuRI	GGCC	2 cut(s)	99, 187
BtgI	CCRYGG	2 cut(s)	47, 100
BtsCI	GGATG	1 cut(s)	84
Cac8I	GCNNGC	3 cut(s)	110, 114, 123
Cfr13I	GGNCC	1 cut(s)	44
CviAII	CATG	4 cut(s)	15, 48, 101, 245
CviJI	RGCY	6 cut(s)	73, 99, 108, 136, 156, 187
CviKI_1	RGCY	6 cut(s)	73, 99, 108, 136, 156, 187
DdeI	CTNAG	3 cut(s)	57, 164, 182
EaeI	YGGCCR	1 cut(s)	97
Eam1104I	CTCTTC	3 cut(s)	146, 216, 255
EarI	CTCTTC	3 cut(s)	146, 216, 255
Eco130I	CCWWGG	2 cut(s)	47, 100
Eco147I	AGGCCT	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	15
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	44
Eco81I	CCTNAGG	2 cut(s)	57, 182
EcoRII	CCWGG	1 cut(s)	87
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	2 cut(s)	47, 100
ErhI	CCWWGG	2 cut(s)	47, 100
FaeI	CATG	4 cut(s)	18, 51, 104, 248
FaiI	YATR	5 cut(s)	16, 49, 96, 102, 246
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	4 cut(s)	14, 47, 100, 244
FauI	CCCGC	1 cut(s)	130
FblI	GTMKAC	1 cut(s)	160
FokI	GGATG	1 cut(s)	71
HaeIII	GGCC	2 cut(s)	99, 187
Hin1II	CATG	4 cut(s)	18, 51, 104, 248
HincII	GTYRAC	1 cut(s)	161
HindII	GTYRAC	1 cut(s)	161
Hpy166II	GTNNAC	2 cut(s)	161, 171
Hpy188I	TCNGA	1 cut(s)	257
Hpy8I	GTNNAC	2 cut(s)	161, 171
HpyAV	CCTTC	1 cut(s)	19
HpyCH4III	ACNGT	1 cut(s)	78
HpyCH4V	TGCA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	4 cut(s)	105, 118, 122, 223
HpyF3I	CTNAG	3 cut(s)	57, 164, 182
Hsp92II	CATG	4 cut(s)	18, 51, 104, 248
LguI	GCTCTTC	3 cut(s)	146, 216, 255
LpnPI	CCDG	9 cut(s)	69, 74, 94, 101, 117, 194, 201, 203, 247
MboII	GAAGA	4 cut(s)	74, 163, 233, 242
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	1 cut(s)	175
MluNI	TGGCCA	1 cut(s)	99
MnlI	CCTC	4 cut(s)	52, 159, 177, 194
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	99
MspR9I	CCNGG	1 cut(s)	89
MvaI	CCWGG	1 cut(s)	89
MwoI	GCNNNNNNNGC	4 cut(s)	105, 118, 122, 223
NcoI	CCATGG	2 cut(s)	47, 100
NlaIII	CATG	4 cut(s)	18, 51, 104, 248
PceI	AGGCCT	1 cut(s)	187
PciSI	GCTCTTC	3 cut(s)	146, 216, 255
PfoI	TCCNGGA	1 cut(s)	87
Psp6I	CCWGG	1 cut(s)	87
PspGI	CCWGG	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	44
SalI	GTCGAC	1 cut(s)	159
SapI	GCTCTTC	3 cut(s)	146, 216, 255
Sau96I	GGNCC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	89
SetI	ASST	9 cut(s)	11, 30, 58, 75, 110, 158, 170, 183, 266
SinI	GGWCC	1 cut(s)	44
Sse9I	AATT	1 cut(s)	175
SseBI	AGGCCT	1 cut(s)	187
SsiI	CCGC	1 cut(s)	123
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	87
StyI	CCWWGG	2 cut(s)	47, 100
TaaI	ACNGT	1 cut(s)	78
TaqI	TCGA	1 cut(s)	160
TasI	AATT	1 cut(s)	175
VpaK11BI	GGWCC	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.