Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0018708

Physical Location & Seq

Genomic Coordinates Reverse (-)

64077386 .. 64077774

Gene Structure 389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGGGAAGTCCAGAACGTTAGCCAACAGCACTGCTACGACTTCGGAGATAAAAAGAGGTCCATGGACTCCTCAAGAGGACAAGAAGCTCTTTGCTTTCATTCAACAACATGGCCATGGAAGCTGGCGGTCCTTGCCCGAGAAAGCTGGTTTACAAAGATGTGGGAAGAGCTGCAGGCTAAGATGGAGAAACTACCTAAACCCGGCTATTAAGAGAGGAAATTTCAGTTTGCAGGAAGACCAGACCATCATTCAGCTTCATGCACTTCTCGGCAACAGGTTACTAATTATTTTTAGTTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

100

Amino Acids

11.41

Weight (kDa)

10.68

Isoelectric Point (pI)

50.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	19 - 66	1e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	22 - 82	1.5e-13	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0018708)

Species	Orthologous Gene IDs
malus_domestica	MD04G1229300.v1.1
pyrus_communis	pycom04g20320
rosa_chinensis	RchiOBHm_Chr3g0485431
rosa_multiflora	Rmu_co8054398.1_g000001 Rmu_sc0000168.1_g000003 Rmu_sc0010132.1_g000031
rosa_roxburghii	Rroxscaffold_2G00083510 Rroxscaffold_3G00271750
rosa_samantha	Rh4CG395300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	127
AclI	AACGTT	1 cut(s)	17
AcoI	YGGCCR	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	220
AfiI	CCNNNNNNNGG	1 cut(s)	202
AgsI	TTSAA	1 cut(s)	104
AluBI	AGCT	5 cut(s)	88, 123, 146, 171, 256
AluI	AGCT	5 cut(s)	88, 123, 146, 171, 256
Ama87I	CYCGRG	1 cut(s)	137
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	171
ApoI	RAATTY	1 cut(s)	220
AspS9I	GGNCC	2 cut(s)	59, 129
AsuC2I	CCSGG	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	137
AvaII	GGWCC	2 cut(s)	59, 129
BalI	TGGCCA	1 cut(s)	114
BbsI	GAAGAC	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	2 cut(s)	177, 254
BcnI	CCSGG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	172
BisI	GCNGC	1 cut(s)	172
BlsI	GCNGC	1 cut(s)	173
Bme1390I	CCNGG	1 cut(s)	203
Bme18I	GGWCC	2 cut(s)	59, 129
BmeT110I	CYCGRG	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	59, 129
BmrFI	CCNGG	1 cut(s)	203
BpiI	GAAGAC	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	57
BpuMI	CCSGG	1 cut(s)	203
BsaJI	CCNNGG	2 cut(s)	62, 115
Bsc4I	CCNNNNNNNGG	1 cut(s)	202
BseDI	CCNNGG	2 cut(s)	62, 115
BseLI	CCNNNNNNNGG	1 cut(s)	202
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	1 cut(s)	158
BshFI	GGCC	1 cut(s)	114
BsiHKCI	CYCGRG	1 cut(s)	137
BsiSI	CCGG	1 cut(s)	203
BslI	CCNNNNNNNGG	1 cut(s)	202
BsnI	GGCC	1 cut(s)	114
BsoBI	CYCGRG	1 cut(s)	137
Bsp19I	CCATGG	2 cut(s)	62, 115
BspACI	CCGC	1 cut(s)	127
BspANI	GGCC	1 cut(s)	114
BspMAI	CTGCAG	1 cut(s)	176
BspQI	GCTCTTC	1 cut(s)	161
BssECI	CCNNGG	2 cut(s)	62, 115
BssT1I	CCWWGG	2 cut(s)	62, 115
Bst6I	CTCTTC	1 cut(s)	161
BstC8I	GCNNGC	2 cut(s)	125, 176
BstDEI	CTNAG	2 cut(s)	179, 300
BstDSI	CCRYGG	2 cut(s)	62, 115
BstMWI	GCNNNNNNNGC	2 cut(s)	120, 133
BstSCI	CCNGG	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	172
BstV1I	GCAGC	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	2 cut(s)	62, 115
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	1 cut(s)	30
Cac8I	GCNNGC	2 cut(s)	125, 176
Cfr13I	GGNCC	2 cut(s)	59, 129
CviAII	CATG	4 cut(s)	63, 110, 116, 260
CviJI	RGCY	9 cut(s)	23, 88, 114, 123, 146, 171, 178, 206, 256
CviKI_1	RGCY	9 cut(s)	23, 88, 114, 123, 146, 171, 178, 206, 256
DdeI	CTNAG	2 cut(s)	179, 300
EaeI	YGGCCR	1 cut(s)	112
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco130I	CCWWGG	2 cut(s)	62, 115
Eco47I	GGWCC	2 cut(s)	59, 129
Eco88I	CYCGRG	1 cut(s)	137
EcoT14I	CCWWGG	2 cut(s)	62, 115
ErhI	CCWWGG	2 cut(s)	62, 115
FaeI	CATG	4 cut(s)	66, 113, 119, 263
FaiI	YATR	4 cut(s)	64, 111, 117, 261
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	4 cut(s)	62, 109, 115, 259
Fnu4HI	GCNGC	1 cut(s)	172
Fsp4HI	GCNGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	172
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	1 cut(s)	203
Hin1II	CATG	4 cut(s)	66, 113, 119, 263
HinfI	GANTC	1 cut(s)	67
HpaII	CCGG	1 cut(s)	203
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	1 cut(s)	46
Hpy188III	TCNNGA	2 cut(s)	12, 74
Hpy8I	GTNNAC	1 cut(s)	152
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	174, 232, 263
HpyF10VI	GCNNNNNNNGC	2 cut(s)	120, 133
HpyF3I	CTNAG	2 cut(s)	179, 300
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	4 cut(s)	66, 113, 119, 263
LguI	GCTCTTC	1 cut(s)	161
LpnPI	CCDG	8 cut(s)	25, 109, 132, 160, 216, 218, 254, 262
Lsp1109I	GCAGC	1 cut(s)	158
MaeII	ACGT	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	279
MboII	GAAGA	2 cut(s)	178, 248
MlsI	TGGCCA	1 cut(s)	114
MluCI	AATT	2 cut(s)	220, 285
MluNI	TGGCCA	1 cut(s)	114
MlyI	GAGTC	1 cut(s)	61
MnlI	CCTC	4 cut(s)	50, 70, 81, 209
Mox20I	TGGCCA	1 cut(s)	114
MscI	TGGCCA	1 cut(s)	114
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	114
Msp20I	TGGCCA	1 cut(s)	114
MspI	CCGG	1 cut(s)	203
MspR9I	CCNGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	2 cut(s)	120, 133
NciI	CCSGG	1 cut(s)	203
NcoI	CCATGG	2 cut(s)	62, 115
NlaIII	CATG	4 cut(s)	66, 113, 119, 263
NmeAIII	GCCGAG	1 cut(s)	249
PciSI	GCTCTTC	1 cut(s)	161
PkrI	GCNGC	1 cut(s)	173
PleI	GAGTC	1 cut(s)	61
PpsI	GAGTC	1 cut(s)	61
Psp1406I	AACGTT	1 cut(s)	17
PspPI	GGNCC	2 cut(s)	59, 129
PstI	CTGCAG	1 cut(s)	176
RseI	CAYNNNNRTG	1 cut(s)	114
SapI	GCTCTTC	1 cut(s)	161
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	172
Sau96I	GGNCC	2 cut(s)	59, 129
SchI	GAGTC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	9 cut(s)	20, 61, 90, 125, 148, 173, 198, 258, 281
SfcI	CTRYAG	1 cut(s)	172
SinI	GGWCC	2 cut(s)	59, 129
SmiMI	CAYNNNNRTG	1 cut(s)	114
SmlI	CTYRAG	1 cut(s)	72
SmoI	CTYRAG	1 cut(s)	72
Sse9I	AATT	2 cut(s)	220, 285
SsiI	CCGC	1 cut(s)	127
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	2 cut(s)	62, 115
TaiI	ACGT	1 cut(s)	20
TasI	AATT	2 cut(s)	220, 285
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	37
TseI	GCWGC	1 cut(s)	171
TspDTI	ATGAA	2 cut(s)	88, 248
TspRI	CASTG	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	59, 129
XapI	RAATTY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.