Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8054398.1

Orthogroup ID

OG0018708

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 298

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8054398.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 211 bp

atgggaagagctccttgctgtgacaagaatggactcaagaaaggtccatggacttctgaagaagatgttgttctcgtcaactatgttcaggaacatggtccaggcaattggcgtaacctcccaaagaacgcaggactccaaagatgtggcaagagttgccggcttagatggactaactacctgaggcctgatataaagagaggaagatttt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006109 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009825 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016049 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032501 GO:0032502 GO:0033993 GO:0040007 GO:0042221 GO:0042335 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0080090 GO:0080091 GO:0097159 GO:0097305 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

70

Amino Acids

8.07

Weight (kDa)

9.87

Isoelectric Point (pI)

39.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018708)

Species	Orthologous Gene IDs
malus_domestica	MD04G1229300.v1.1
pyrus_communis	pycom04g20320
rosa_chinensis	RchiOBHm_Chr3g0485431
rosa_multiflora	Rmu_co8054398.1_g000001 Rmu_sc0000168.1_g000003 Rmu_sc0010132.1_g000031
rosa_roxburghii	Rroxscaffold_2G00083510 Rroxscaffold_3G00271750
rosa_samantha	Rh4CG395300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	78
AjnI	CCWGG	1 cut(s)	100
AluBI	AGCT	1 cut(s)	11
AluI	AGCT	1 cut(s)	11
Alw21I	GWGCWC	1 cut(s)	13
AoxI	GGCC	1 cut(s)	185
AspS9I	GGNCC	2 cut(s)	44, 98
AvaII	GGWCC	2 cut(s)	44, 98
AxyI	CCTNAGG	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	13
Bbv12I	GWGCWC	1 cut(s)	13
BccI	CCATC	1 cut(s)	162
BciT130I	CCWGG	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	2 cut(s)	44, 98
BmgT120I	GGNCC	2 cut(s)	44, 98
BmrFI	CCNGG	1 cut(s)	102
BpuEI	CTTGAG	1 cut(s)	20
BsaJI	CCNNGG	1 cut(s)	47
Bse118I	RCCGGY	1 cut(s)	159
Bse21I	CCTNAGG	1 cut(s)	182
BseBI	CCWGG	1 cut(s)	102
BseDI	CCNNGG	1 cut(s)	47
BseMII	CTCAG	1 cut(s)	173
BshFI	GGCC	1 cut(s)	187
BsiHKAI	GWGCWC	1 cut(s)	13
BsiSI	CCGG	1 cut(s)	160
BsnI	GGCC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp19I	CCATGG	1 cut(s)	47
BspANI	GGCC	1 cut(s)	187
BspCNI	CTCAG	1 cut(s)	174
BsrFI	RCCGGY	1 cut(s)	159
BssAI	RCCGGY	1 cut(s)	159
BssECI	CCNNGG	1 cut(s)	47
BssT1I	CCWWGG	1 cut(s)	47
Bst2UI	CCWGG	1 cut(s)	102
BstAPI	GCANNNNNTGC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	164, 182
BstDSI	CCRYGG	1 cut(s)	47
BstMWI	GCNNNNNNNGC	1 cut(s)	156
BstNI	CCWGG	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	100
BstXI	CCANNNNNNTGG	2 cut(s)	108, 146
Bsu36I	CCTNAGG	1 cut(s)	182
BsuRI	GGCC	1 cut(s)	187
BtgI	CCRYGG	1 cut(s)	47
Cac8I	GCNNGC	1 cut(s)	161
Cfr10I	RCCGGY	1 cut(s)	159
Cfr13I	GGNCC	2 cut(s)	44, 98
CviAII	CATG	2 cut(s)	48, 95
CviJI	RGCY	3 cut(s)	11, 163, 187
CviKI_1	RGCY	3 cut(s)	11, 163, 187
DdeI	CTNAG	2 cut(s)	164, 182
Ecl136II	GAGCTC	1 cut(s)	11
Eco130I	CCWWGG	1 cut(s)	47
Eco147I	AGGCCT	1 cut(s)	187
Eco24I	GRGCYC	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	44, 98
Eco53kI	GAGCTC	1 cut(s)	11
Eco57I	CTGAAG	1 cut(s)	78
Eco81I	CCTNAGG	1 cut(s)	182
EcoICRI	GAGCTC	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	100
EcoT14I	CCWWGG	1 cut(s)	47
EcoT38I	GRGCYC	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	47
FaeI	CATG	2 cut(s)	51, 98
FaiI	YATR	4 cut(s)	49, 84, 96, 194
FalI	AAGNNNNNCTT	1 cut(s)	30
FatI	CATG	2 cut(s)	47, 94
FriOI	GRGCYC	1 cut(s)	13
HaeIII	GGCC	1 cut(s)	187
HapII	CCGG	1 cut(s)	160
Hin1II	CATG	2 cut(s)	51, 98
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	33, 135
HpaII	CCGG	1 cut(s)	160
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	1 cut(s)	58
Hpy188III	TCNNGA	2 cut(s)	37, 89
Hpy8I	GTNNAC	1 cut(s)	79
HpyF10VI	GCNNNNNNNGC	1 cut(s)	156
HpyF3I	CTNAG	2 cut(s)	164, 182
Hsp92II	CATG	2 cut(s)	51, 98
KroI	GCCGGC	1 cut(s)	159
KroNI	GCCGGC	1 cut(s)	161
LmnI	GCTCC	1 cut(s)	16
LpnPI	CCDG	7 cut(s)	74, 87, 114, 117, 173, 194, 201
MaeIII	GTNAC	2 cut(s)	20, 113
MboII	GAAGA	3 cut(s)	18, 71, 74
MfeI	CAATTG	1 cut(s)	106
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	1 cut(s)	106
MlyI	GAGTC	2 cut(s)	27, 129
MnlI	CCTC	3 cut(s)	128, 177, 194
MroNI	GCCGGC	1 cut(s)	159
MspI	CCGG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	102
MunI	CAATTG	1 cut(s)	106
MvaI	CCWGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	156
NaeI	GCCGGC	1 cut(s)	161
NcoI	CCATGG	1 cut(s)	47
NgoMIV	GCCGGC	1 cut(s)	159
NlaIII	CATG	2 cut(s)	51, 98
NmuCI	GTSAC	1 cut(s)	20
PceI	AGGCCT	1 cut(s)	187
PdiI	GCCGGC	1 cut(s)	161
PleI	GAGTC	2 cut(s)	27, 129
PpsI	GAGTC	2 cut(s)	27, 129
Psp124BI	GAGCTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	100
PspGI	CCWGG	1 cut(s)	100
PspPI	GGNCC	2 cut(s)	44, 98
SacI	GAGCTC	1 cut(s)	13
Sau96I	GGNCC	2 cut(s)	44, 98
SchI	GAGTC	2 cut(s)	27, 129
ScrFI	CCNGG	1 cut(s)	102
SduI	GDGCHC	1 cut(s)	13
SetI	ASST	4 cut(s)	13, 46, 120, 183
SinI	GGWCC	2 cut(s)	44, 98
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	1 cut(s)	106
SseBI	AGGCCT	1 cut(s)	187
SstI	GAGCTC	1 cut(s)	13
StuI	AGGCCT	1 cut(s)	187
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	47
TasI	AATT	1 cut(s)	106
TseFI	GTSAC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	20
VpaK11BI	GGWCC	2 cut(s)	44, 98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.