Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018708

Physical Location & Seq

Genomic Coordinates Forward (+)

6214183 .. 6216513

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00083510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGGTCGTTCACCGTGCTGCGACAAAGTCGGGTTAAAGAAAGGTCCGTGGACTCCAGAAGAAGACCAGAAGCTCTTGGCTTATATCGAAGAACATGGCCATGGAAGTTGGAGAGCCCTCCCAATCAAAGCTGGGCTTCAGAGATGTGGAAAGAGCTGTAGACTGAGATGGACTAATTATCTGAGACCAGATATCAAGAGGGAAAATTTAGTTTGCAAGAAGAACAGACCATTATACAACTCCATGCCCTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003002 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0007275 GO:0007389 GO:0008150 GO:0009628 GO:0009651 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009739 GO:0009751 GO:0009753 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010033 GO:0010035 GO:0010038 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0033993 GO:0035017 GO:0042221 GO:0042335 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0046677 GO:0046686 GO:0048468 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1901957 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

84

Amino Acids

9.71

Weight (kDa)

9.67

Isoelectric Point (pI)

57.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	1.8e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 69	2e-10	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0018708)

Species	Orthologous Gene IDs
malus_domestica	MD04G1229300.v1.1
pyrus_communis	pycom04g20320
rosa_chinensis	RchiOBHm_Chr3g0485431
rosa_multiflora	Rmu_co8054398.1_g000001 Rmu_sc0000168.1_g000003 Rmu_sc0010132.1_g000031
rosa_roxburghii	Rroxscaffold_2G00083510 Rroxscaffold_3G00271750
rosa_samantha	Rh4CG395300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AcoI	YGGCCR	1 cut(s)	97
AcsI	RAATTY	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	122
AluBI	AGCT	3 cut(s)	73, 131, 156
AluI	AGCT	3 cut(s)	73, 131, 156
Alw26I	GTCTC	1 cut(s)	178
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	18
ApoI	RAATTY	1 cut(s)	205
AspS9I	GGNCC	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	3
AvaII	GGWCC	1 cut(s)	44
BalI	TGGCCA	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	69
BbvI	GCAGC	1 cut(s)	5
BccI	CCATC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	178
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme18I	GGWCC	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	44
BpiI	GAAGAC	1 cut(s)	69
BpmI	CTGGAG	1 cut(s)	39
BsaI	GGTCTC	1 cut(s)	178
BsaJI	CCNNGG	2 cut(s)	47, 100
BseDI	CCNNGG	2 cut(s)	47, 100
BseMII	CTCAG	2 cut(s)	155, 173
BseXI	GCAGC	1 cut(s)	5
BseYI	CCCAGC	1 cut(s)	131
BshFI	GGCC	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	178
BsnI	GGCC	1 cut(s)	99
Bso31I	GGTCTC	1 cut(s)	178
Bsp1286I	GDGCHC	1 cut(s)	118
Bsp19I	CCATGG	1 cut(s)	100
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	2 cut(s)	156, 174
BspTNI	GGTCTC	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	47, 100
BssT1I	CCWWGG	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	15
BstDEI	CTNAG	3 cut(s)	164, 182, 252
BstDSI	CCRYGG	2 cut(s)	47, 100
BstMAI	GTCTC	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	1 cut(s)	5
BstV2I	GAAGAC	1 cut(s)	69
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	2 cut(s)	47, 100
Cfr13I	GGNCC	1 cut(s)	44
CviAII	CATG	3 cut(s)	95, 101, 244
CviJI	RGCY	7 cut(s)	73, 80, 99, 116, 131, 136, 156
CviKI_1	RGCY	7 cut(s)	73, 80, 99, 116, 131, 136, 156
DdeI	CTNAG	3 cut(s)	164, 182, 252
EaeI	YGGCCR	1 cut(s)	97
Eco130I	CCWWGG	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	118
Eco31I	GGTCTC	1 cut(s)	178
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	44
Eco57I	CTGAAG	1 cut(s)	122
EcoRV	GATATC	1 cut(s)	193
EcoT14I	CCWWGG	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	118
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	3 cut(s)	98, 104, 247
FaiI	YATR	5 cut(s)	84, 96, 102, 235, 245
FalI	AAGNNNNNCTT	2 cut(s)	120, 152
FatI	CATG	3 cut(s)	94, 100, 243
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	19
FriOI	GRGCYC	1 cut(s)	118
Fsp4HI	GCNGC	1 cut(s)	19
GluI	GCNGC	1 cut(s)	19
GsaI	CCCAGC	1 cut(s)	135
GsuI	CTGGAG	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	98, 104, 247
HinfI	GANTC	1 cut(s)	52
HphI	GGTGA	1 cut(s)	3
Hpy166II	GTNNAC	3 cut(s)	11, 51, 161
Hpy188I	TCNGA	2 cut(s)	141, 183
Hpy188III	TCNNGA	2 cut(s)	56, 196
Hpy8I	GTNNAC	3 cut(s)	11, 51, 161
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	1 cut(s)	216
HpyF3I	CTNAG	3 cut(s)	164, 182, 252
Hsp92II	CATG	3 cut(s)	98, 104, 247
LpnPI	CCDG	4 cut(s)	69, 80, 117, 201
Lsp1109I	GCAGC	1 cut(s)	5
MboII	GAAGA	4 cut(s)	71, 74, 101, 232
MhlI	GDGCHC	1 cut(s)	118
MlsI	TGGCCA	1 cut(s)	99
MluCI	AATT	2 cut(s)	175, 205
MluNI	TGGCCA	1 cut(s)	99
MlyI	GAGTC	1 cut(s)	46
MmeI	TCCRAC	1 cut(s)	89
MnlI	CCTC	2 cut(s)	128, 192
Mox20I	TGGCCA	1 cut(s)	99
MscI	TGGCCA	1 cut(s)	99
MseI	TTAA	1 cut(s)	35
MslI	CAYNNNNRTG	1 cut(s)	99
Msp20I	TGGCCA	1 cut(s)	99
NcoI	CCATGG	1 cut(s)	100
NlaIII	CATG	3 cut(s)	98, 104, 247
PflFI	GACNNNGTC	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	20
PleI	GAGTC	1 cut(s)	46
PpsI	GAGTC	1 cut(s)	46
PspFI	CCCAGC	1 cut(s)	131
PspPI	GGNCC	1 cut(s)	44
PsyI	GACNNNGTC	1 cut(s)	26
RseI	CAYNNNNRTG	1 cut(s)	99
SaqAI	TTAA	1 cut(s)	35
SatI	GCNGC	1 cut(s)	19
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	46
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	4 cut(s)	46, 75, 133, 158
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	44
SmiMI	CAYNNNNRTG	1 cut(s)	99
Sse9I	AATT	2 cut(s)	175, 205
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	87
TasI	AATT	2 cut(s)	175, 205
Tru1I	TTAA	1 cut(s)	35
Tru9I	TTAA	1 cut(s)	35
TseI	GCWGC	1 cut(s)	18
TspGWI	ACGGA	1 cut(s)	36
Tth111I	GACNNNGTC	1 cut(s)	26
VpaK11BI	GGWCC	1 cut(s)	44
XapI	RAATTY	1 cut(s)	205
XmiI	GTMKAC	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.