Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000168.1

Orthogroup ID

OG0018708

Physical Location & Seq

Genomic Coordinates Reverse (-)

16356 .. 16750

Gene Structure 395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000168.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

atgggaaggcaatctaatagtactgttgcatctcctggaataaggagaggtccatggactcctcaggaggacaagaagctctttgctttcgttcaacaacatggccatggaagctggcgttccttaccccagaaagctggtctccaaagatgtggaaagagctgcaggctaagatggagaaactatctaaaccctgatattaagagaggaaatttcagtttgcaggaagaccagaccatcattctacttcatgcacttttgggcaacaggcaattaattgctaaattgaatcttaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

99

Amino Acids

11.32

Weight (kDa)

11.22

Isoelectric Point (pI)

57.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018708)

Species	Orthologous Gene IDs
malus_domestica	MD04G1229300.v1.1
pyrus_communis	pycom04g20320
rosa_chinensis	RchiOBHm_Chr3g0485431
rosa_multiflora	Rmu_co8054398.1_g000001 Rmu_sc0000168.1_g000003 Rmu_sc0010132.1_g000031
rosa_roxburghii	Rroxscaffold_2G00083510 Rroxscaffold_3G00271750
rosa_samantha	Rh4CG395300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	103
AcsI	RAATTY	1 cut(s)	211
AfaI	GTAC	1 cut(s)	22
AgsI	TTSAA	2 cut(s)	95, 289
AjnI	CCWGG	1 cut(s)	34
AluBI	AGCT	4 cut(s)	79, 114, 137, 162
AluI	AGCT	4 cut(s)	79, 114, 137, 162
Alw26I	GTCTC	1 cut(s)	146
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	1 cut(s)	211
AseI	ATTAAT	1 cut(s)	275
AspS9I	GGNCC	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	50
AxyI	CCTNAGG	1 cut(s)	63
BalI	TGGCCA	1 cut(s)	105
BbsI	GAAGAC	1 cut(s)	234
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	2 cut(s)	168, 245
BciT130I	CCWGG	1 cut(s)	36
BcoDI	GTCTC	1 cut(s)	146
BfmI	CTRYAG	1 cut(s)	163
BisI	GCNGC	1 cut(s)	163
BlsI	GCNGC	1 cut(s)	164
BmcAI	AGTACT	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	36
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmrFI	CCNGG	1 cut(s)	36
BmsI	GCATC	1 cut(s)	38
BpiI	GAAGAC	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	53, 106
Bse21I	CCTNAGG	1 cut(s)	63
BseBI	CCWGG	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	53, 106
BseMII	CTCAG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	51
BseXI	GCAGC	1 cut(s)	149
BshFI	GGCC	1 cut(s)	105
BsmAI	GTCTC	1 cut(s)	146
BsnI	GGCC	1 cut(s)	105
Bso31I	GGTCTC	1 cut(s)	146
Bsp19I	CCATGG	2 cut(s)	53, 106
BspANI	GGCC	1 cut(s)	105
BspCNI	CTCAG	1 cut(s)	76
BspMAI	CTGCAG	1 cut(s)	167
BspTNI	GGTCTC	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	53, 106
BssT1I	CCWWGG	2 cut(s)	53, 106
Bst2UI	CCWGG	1 cut(s)	36
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	2 cut(s)	116, 167
BstDEI	CTNAG	2 cut(s)	63, 170
BstDSI	CCRYGG	2 cut(s)	53, 106
BstMAI	GTCTC	1 cut(s)	146
BstMWI	GCNNNNNNNGC	1 cut(s)	111
BstNI	CCWGG	1 cut(s)	36
BstSCI	CCNGG	1 cut(s)	34
BstSFI	CTRYAG	1 cut(s)	163
BstV1I	GCAGC	1 cut(s)	149
BstV2I	GAAGAC	1 cut(s)	234
BstXI	CCANNNNNNTGG	2 cut(s)	137, 152
Bsu36I	CCTNAGG	1 cut(s)	63
BsuRI	GGCC	1 cut(s)	105
BtgI	CCRYGG	2 cut(s)	53, 106
Cac8I	GCNNGC	2 cut(s)	116, 167
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	4 cut(s)	54, 101, 107, 251
CviJI	RGCY	6 cut(s)	79, 105, 114, 137, 162, 169
CviKI_1	RGCY	6 cut(s)	79, 105, 114, 137, 162, 169
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	2 cut(s)	63, 170
EaeI	YGGCCR	1 cut(s)	103
Eco130I	CCWWGG	2 cut(s)	53, 106
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	1 cut(s)	50
Eco81I	CCTNAGG	1 cut(s)	63
EcoRII	CCWGG	1 cut(s)	34
EcoT14I	CCWWGG	2 cut(s)	53, 106
ErhI	CCWWGG	2 cut(s)	53, 106
FaeI	CATG	4 cut(s)	57, 104, 110, 254
FaiI	YATR	4 cut(s)	55, 102, 108, 252
FalI	AAGNNNNNCTT	2 cut(s)	65, 97
FatI	CATG	4 cut(s)	53, 100, 106, 250
Fnu4HI	GCNGC	1 cut(s)	163
Fsp4HI	GCNGC	1 cut(s)	163
GluI	GCNGC	1 cut(s)	163
HaeIII	GGCC	1 cut(s)	105
Hin1II	CATG	4 cut(s)	57, 104, 110, 254
HinfI	GANTC	2 cut(s)	58, 289
Hpy188III	TCNNGA	1 cut(s)	65
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	4 cut(s)	29, 165, 223, 254
HpyF10VI	GCNNNNNNNGC	1 cut(s)	111
HpyF3I	CTNAG	2 cut(s)	63, 170
Hsp92II	CATG	4 cut(s)	57, 104, 110, 254
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	1 cut(s)	38
MboII	GAAGA	1 cut(s)	239
MlsI	TGGCCA	1 cut(s)	105
MluCI	AATT	5 cut(s)	211, 272, 276, 284, 295
MluNI	TGGCCA	1 cut(s)	105
MlyI	GAGTC	1 cut(s)	52
MnlI	CCTC	4 cut(s)	41, 61, 72, 200
Mox20I	TGGCCA	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	105
MseI	TTAA	4 cut(s)	201, 275, 294, 298
MslI	CAYNNNNRTG	1 cut(s)	105
Msp20I	TGGCCA	1 cut(s)	105
MspR9I	CCNGG	1 cut(s)	36
MvaI	CCWGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	111
NcoI	CCATGG	2 cut(s)	53, 106
NlaIII	CATG	4 cut(s)	57, 104, 110, 254
PacI	TTAATTAA	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	289
PfoI	TCCNGGA	1 cut(s)	34
PkrI	GCNGC	1 cut(s)	164
PleI	GAGTC	1 cut(s)	52
PpsI	GAGTC	1 cut(s)	52
PshBI	ATTAAT	1 cut(s)	275
Psp6I	CCWGG	1 cut(s)	34
PspGI	CCWGG	1 cut(s)	34
PspPI	GGNCC	1 cut(s)	50
PstI	CTGCAG	1 cut(s)	167
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	4 cut(s)	201, 275, 294, 298
SatI	GCNGC	1 cut(s)	163
Sau96I	GGNCC	1 cut(s)	50
ScaI	AGTACT	1 cut(s)	22
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	36
SetI	ASST	5 cut(s)	52, 81, 116, 139, 164
SfaNI	GCATC	1 cut(s)	38
SfcI	CTRYAG	1 cut(s)	163
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	5 cut(s)	211, 272, 276, 284, 295
StyD4I	CCNGG	1 cut(s)	34
StyI	CCWWGG	2 cut(s)	53, 106
TaaI	ACNGT	1 cut(s)	25
TasI	AATT	5 cut(s)	211, 272, 276, 284, 295
TatI	WGTACW	1 cut(s)	20
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	4 cut(s)	201, 275, 294, 298
Tru9I	TTAA	4 cut(s)	201, 275, 294, 298
TseI	GCWGC	1 cut(s)	162
TspDTI	ATGAA	1 cut(s)	239
VpaK11BI	GGWCC	1 cut(s)	50
VspI	ATTAAT	1 cut(s)	275
XapI	RAATTY	1 cut(s)	211
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.